Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Melitaea_20cinxia_20[genbank_20GCA_5F000716385.1_202014-07-09] 8,261 sequences; 389,907,520 total letters Query= NC_018504.1 Length=123876 Score E Sequences producing significant alignments: (Bits) Value seq566 352 2e-92 seq5066 143 2e-29 >seq566 Length=99533 Score = 352 bits (390), Expect = 2e-92 Identities = 671/978 (69%), Gaps = 15/978 (2%) Strand=Plus/Minus Query 42470 TCTATAGTCTACGACGCCATCTTCCCAAGTACCCGAAACTGGACCTGTCGCAATACCCGT 42529 ||| || || || || || |||| ||| || ||| ||||| ||||| || | || || Sbjct 71237 TCTGTAATCGACTACACCGTCTTGCCAGGTTCCCTTGACTGGTCCTGTTGCGTTGCCAGT 71178 Query 42530 GAAGGGATTATTGTTTTGGTAATTGCTTACTCCGGTCCAACCTCGTCCGTACATGGCCAC 42589 ||||||||| |||| | ||| | || || ||||| || ||||||||||| ||||| Sbjct 71177 GAAGGGATTGTTGTCCTCGTACCCGTGGACGCCAGTCCAGCCACGTCCGTACATTGCCAC 71118 Query 42590 GCCTAAAATTATTTTTTGAGGTTTCACTTTTTGTTTCAA-AAGCGTTTGAACGGCATAAT 42648 || | || || || | || ||||| ||| || ||| ||| | | || ||| Sbjct 71117 TCCGACGATGATCTTCTTCGGGTTCACACCTTGAGCTAACAAGTATTTTA-CACCAAAAT 71059 Query 42649 CTGCCGTGTAATGTTCGTTTTCGTTCCATTCGGGAGCATACAGATTTGTTTGATGGCCCA 42708 | | || ||| ||| || |||||||| ||||| || | | ||| || || |||| Sbjct 71058 CGGTAGTATAAGTTTCTTTAGGATTCCATTCTGGAGCGTATAAAGGTGTCTGGTGCCCCA 70999 Query 42709 AATCTGAATTTGACCAAGCACCTTTAAAGTCATAGCTCATTAAAAATATTTTATCCAAAT 42768 | || |||||||| || || |||||||| ||||| | || || | |||| | Sbjct 70998 GAGTGTCGTTAGACCAAGCTCCCTTGAAGTCATAACTCATCAGGAAAATGTGGTCCATGT 70939 Query 42769 AGTTTTGAGCATCGTTGTAATCGACAATAGCGATTTTGTCGTCTCCCGCACTAATTGCGC 42828 ||||||| || | | |||| || || | ||||||||| || || || || || Sbjct 70938 AGTTTTGGGCTTTGCTGTAGTCAACTACCTGGATTTTGTCCCAACCAGCGCTGATAGCTG 70879 Query 42829 TAGTCAATTCGTATTTGCGATTAGTTTCGTTTTCTAGTTCGTCCAGCATGTCGCGCAATT 42888 |||||||||||||| | | |||| || |||||||| ||||| || || | || Sbjct 70878 ATGTCAATTCGTATTTCCTACCAGTTGAGTGAGAAAGTTCGTCAAGCATTTCACGGAGTT 70819 Query 42889 CTCGTAACAAAACT-ACATACGTAAGACCGTCATTTTGAGGATCTCCAATTGTCGGATTA 42947 | | | | | | || || | |||||| || || || | ||||| || || ||| Sbjct 70818 C-CTTCATGAGGTTGACGTAAACATCACCGTC-TTCTG-GGCT-TCCAAAGGTAGGGTTA 70763 Query 42948 GCTCCTTTACCACCGGGAAATTCCCAATCAATATCGACGCCGTCAAAAAATTTCCAAGTG 43007 || ||||||||||| || || ||||||||||| || || || || ||||||||||| || Sbjct 70762 GCGCCTTTACCACCAGGGAACTCCCAATCAATGTCAACACCATCGAAAAATTTCCAGGTT 70703 Query 43008 AGCAAAAACTCACGTACTGAATCCACAAATATTTTACGCTTGTTTGCATCGCTGAAAAAA 43067 | | ||||| ||||| || || || | | |||| | || | ||||| Sbjct 70702 TGAAGGAACTCTTTGACTGAGTCAACGAAGCGAGTTCTCTTGGTCTTGTCAGTAAAAAAG 70643 Query 43068 TAAAACGGGTCGGACAATGTCCATCCACCTATCGAAGGTAACACTTTAAGATGAGGGTTA 43127 | ||||| || | |||||||||||| || || ||||| | | || || | ||| | Sbjct 70642 AAGAACGGATCAGCCAATGTCCATCCTCCAATAGAAGGAAGAATCTTCAGGTCAGGTCTC 70583 Query 43128 GCTTTTTTGGCTGCCATTAATTGACCAAAGTTGCCTTTGTACGGTTCATTCCACGAGGAA 43187 |||| ||| || ||| | |||||| |||||||||||||| ||||||||||| || || Sbjct 70582 GCTTGTTTCAATGACATCAGTTGACCGAAGTTGCCTTTGTATGGTTCATTCCAAGATGAT 70523 Query 43188 ACACCTTTTTGTGGTTTCTGTATAGCCGCCCACGGATCGTGTATGGAAACTTTGAAGTCG 43247 | |||||| || |||||||||| || ||||| |||||||| || || ||||| ||||| Sbjct 70522 AGACCTTTCTGAGGTTTCTGTAAGGCTGCCCAGGGATCGTGAATAGATACTTTAAAGTCC 70463 Query 43248 CTTCGACCCGCACAAGATTTTTGAAGAGCTTCAAAACTGCCAGGAATAGATTTTAAACTG 43307 ||||| ||||| |||||| |||| ||||| || || ||||||||| Sbjct 70462 TCGCGACCACTGCAAGAACGTTGAAGTGCTTGGAAACTTCCTTCGATTTCCTTTAAACTG 70403 Query 43308 TCATTAATGCCGTCACCGCCGCATATCGGAATAAATCCGTACAACAAATGAGACAAATTG 43367 || |||||||| || || || || || |||||||| || |||| | |||| | |||| Sbjct 70402 TCGTTAATGCCATCTCCACCACAAATTGGAATAAAACCATACAGAAGGTGAGTTAGATTG 70343 Query 43368 GGTAAAGGCACTTTGTTGACAGGAAATGAACGACC----GTATACGCCCCATTCTACAAA 43423 || | || || | ||| || |||| || ||| ||||||||||| ||||| Sbjct 70342 GGAATTGGTACGCGATCGACGGG----GAACTTCCTCGGGTAAACGCCCCATTCCACAAA 70287 Query 43424 ATAAGCGGCCACGGCTTT 43441 ||||||| | || |||| Sbjct 70286 ATAAGCGCCAACTACTTT 70269 >seq5066 Length=19128 Score = 143 bits (158), Expect = 2e-29 Identities = 157/209 (75%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 101261 ACTAAATGAAGGGTAGATTCTTTTTGTATATTGTAATCGGCGATAGTTCTGGCATCGTCC 101320 || || ||||| ||||| || ||||| ||||| || || | | || | | || || Sbjct 19059 ACCAAGTGAAGTGTAGACTCCTTTTGAATATTATAGTCTGATAGTGTACGACCGTCTTCA 19000 Query 101321 AATTGCTTACCTGCAAATATCAAACGCTGTTGATCGGGCGGAATGCCTTCTTTATCTTGA 101380 | |||||| || ||||| ||||||||||||||||| || |||||||||||||| |||||| Sbjct 18999 AGTTGCTTGCCAGCAAAGATCAAACGCTGTTGATCTGGGGGAATGCCTTCTTTGTCTTGA 18940 Query 101381 ATTTTTTGTTTTACAATTTCTACAGTGTCAGACGTTTCCACTTCAAGAGTGACCGTTTTG 101440 || ||| ||| ||| | || | ||| || || | ||| ||||| || || | ||||| Sbjct 18939 ATCTTTGCTTTGACATTCTCGATAGTATCCGAAGGTTCAACTTCGAGCGTTATAGTTTTA 18880 Query 101441 CCGGTTAAAGTTTTTACAAATATCTGCAT 101469 || || | |||||| || || |||||||| Sbjct 18879 CCTGTAAGAGTTTTAACGAAAATCTGCAT 18851 Score = 131 bits (144), Expect = 1e-25 Identities = 155/210 (74%), Gaps = 0/210 (0%) Strand=Plus/Minus Query 101260 AACTAAATGAAGGGTAGATTCTTTTTGTATATTGTAATCGGCGATAGTTCTGGCATCGTC 101319 ||| | ||| | ||||||||||||||| || || ||||||| | |||| |||| || Sbjct 18832 AACCAGATGTAAGGTAGATTCTTTTTGAATGTTATAATCGGATAAGGTTCGACCATCTTC 18773 Query 101320 CAATTGCTTACCTGCAAATATCAAACGCTGTTGATCGGGCGGAATGCCTTCTTTATCTTG 101379 | ||||| || ||||| |||||||| || ||||| || |||||||||||||| ||||| Sbjct 18772 AAGCTGCTTTCCAGCAAAAATCAAACGTTGCTGATCTGGGGGAATGCCTTCTTTGTCTTG 18713 Query 101380 AATTTTTTGTTTTACAATTTCTACAGTGTCAGACGTTTCCACTTCAAGAGTGACCGTTTT 101439 ||| || ||| || |||| | || || || | ||| ||||| | ||| | || || Sbjct 18712 AATCTTCGCTTTAACGTTTTCGATGGTATCGGATGGTTCAACTTCTAAAGTAATAGTCTT 18653 Query 101440 GCCGGTTAAAGTTTTTACAAATATCTGCAT 101469 || || | ||| || || || |||||||| Sbjct 18652 ACCCGTGAGAGTCTTCACGAAAATCTGCAT 18623 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 396238502319177