Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Melitaea_20cinxia_20[genbank_20GCA_5F000716385.1_202014-07-09] 8,261 sequences; 389,907,520 total letters Query= NC_018875.1 Length=119082 Score E Sequences producing significant alignments: (Bits) Value seq2668 206 2e-48 seq5066 116 3e-21 seq5371 98.7 8e-16 >seq2668 Length=134947 Score = 206 bits (228), Expect = 2e-48 Identities = 354/521 (68%), Gaps = 51/521 (10%) Strand=Plus/Minus Query 7603 AACGGGTTTTATTATTTGGGTCGAAGAGACGAGGTGCGTTGCGCGTTTTGTAAAGTGGAA 7662 ||||| ||||||||| | || ||| ||||||||||| | |||||||| ||||| |||||| Sbjct 31422 AACGGATTTTATTATCTCGGACGAGGAGACGAGGTGAGATGCGCGTTCTGTAAGGTGGAA 31363 Query 7663 ATCATGCGGTGGGTCGAAGGTGACGATCCGGAGAAGGACCATCGGAAGTGGGCACCGCAG 7722 |||||| |||||| |||||||||||||| | ||| ||||||| | ||||| |||||| Sbjct 31362 ATCATGAAGTGGGTGGAAGGTGACGATCCTGCGAAAGACCATCAGCGATGGGCGCCGCAG 31303 Query 7723 TGTCCGTTTCTGCGT------------TCG-------------TTGACC----GTCGGCG 7753 ||||| || ||| | ||| ||| | | | ||| Sbjct 31302 TGTCCTTTCCTGAGGCGCCAATCGGGCTCGGGCAACATTCCTCTTGGCTCCCAGACAGCG 31243 Query 7754 GGCGG----GACGAGGTTGG--TTCGGGCGCGGTGCACACCC----------------CC 7791 | ||| |||||| ||| | || |||| | | ||| || Sbjct 31242 GTCGGCCGCGACGAGTGTGGCGTCCGAGCGCCCCCCGCCCCCAACTCTATCCGCATGCCC 31183 Query 7792 GGCCCAGCCAACCCTAGGTACGCGTTGGAGCAAGTGCGTCTGCTCACGTTCAAGGACTGG 7851 ||||||| ||||| |||| || | ||| | || | | ||| || ||||| ||| Sbjct 31182 GGCCCAGTACACCCTCGGTATGCTTCAGAGGCCGCTCGATTACGCACCTTTAAGGATTGG 31123 Query 7852 CCGAAGAGTATAAAGCAGAAACCAAAGCAGCTTGCCGAAGCTGGATTATACTACACGGGC 7911 || ||||| || || ||||| || | |||||||||||||| || | ||| || || Sbjct 31122 CCCCGCAGTATGAAACAAAAACCCGAGGAACTTGCCGAAGCTGGCTTTTTCTATACCGGT 31063 Query 7912 CGCGGTGATATGACAAAGTGTTTCTACTGTGACGGGGGTCTCAAAGATTGGGAGGAAAAC 7971 ||| |||| ||| ||| || || |||||||||||||| | ||||||||| | || Sbjct 31062 AACGGAGATAAGACGTTGTGCTTTTATTGTGACGGGGGTCTTAGGGATTGGGAGAACGAC 31003 Query 7972 GATATACCGTGGGAGCAACACGCGCGCTGGTTTGATAAATGCGCATATGTCAAACTAGTC 8031 ||| |||||||||||||||| || || ||||| ||| ||||| ||||| |||| || Sbjct 31002 GATGTACCGTGGGAGCAACATGCTCGTTGGTTCGATCGCTGCGCCTATGTACAACTCGTA 30943 Query 8032 AAAGGGGAGGAATATGTTCAGAAGGTAATTACTGAAGCGTG 8072 |||||| ||| || || || || || ||| | ||||| || Sbjct 30942 AAAGGGCGGGATTACGTACAAAAAGTTATTTCGGAAGCTTG 30902 >seq5066 Length=19128 Score = 116 bits (128), Expect = 3e-21 Identities = 151/209 (72%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 48558 ACCAAATGTAGCGTGCTCTCTTTTTGAATATTGTAATCAGATAGACTTCGATCGTCGTCC 48617 ||||| || || || ||| ||||||||||| || || ||||| | ||| |||| || Sbjct 19059 ACCAAGTGAAGTGTAGACTCCTTTTGAATATTATAGTCTGATAGTGTACGACCGTCTTCA 19000 Query 48618 AACTGCTTACCGGCAAATATCAGTCGCTGTTGATCCGTGGGAACGCCCTCCTTGTCGCTA 48677 | ||||| || ||||| |||| ||||||||||| | ||||| ||| || ||||| | Sbjct 18999 AGTTGCTTGCCAGCAAAGATCAAACGCTGTTGATCTGGGGGAATGCCTTCTTTGTCTTGA 18940 Query 48678 ATCTTTTGTTTTACAGAACCCACAGACTCTGACGCCTCCACCTCCACCGTAATCGTTTTT 48737 |||||| ||| ||| | | || || || | || || || | ||| || ||||| Sbjct 18939 ATCTTTGCTTTGACATTCTCGATAGTATCCGAAGGTTCAACTTCGAGCGTTATAGTTTTA 18880 Query 48738 CCCGTCAAAGTTTTTACAAAAATCTGCAT 48766 || || | |||||| || ||||||||||| Sbjct 18879 CCTGTAAGAGTTTTAACGAAAATCTGCAT 18851 Score = 95.1 bits (104), Expect = 9e-15 Identities = 154/222 (69%), Gaps = 0/222 (0%) Strand=Plus/Minus Query 48549 AGCCGCAACACCAAATGTAGCGTGCTCTCTTTTTGAATATTGTAATCAGATAGACTTCGA 48608 ||||| | |||| ||||| || ||||||||||| || ||||| |||| ||||| Sbjct 18840 AGCCGGAGAACCAGATGTAAGGTAGATTCTTTTTGAATGTTATAATCGGATAAGGTTCGA 18781 Query 48609 TCGTCGTCCAACTGCTTACCGGCAAATATCAGTCGCTGTTGATCCGTGGGAACGCCCTCC 48668 | || || | |||||| || ||||| |||| || || ||||| | ||||| ||| || Sbjct 18780 CCATCTTCAAGCTGCTTTCCAGCAAAAATCAAACGTTGCTGATCTGGGGGAATGCCTTCT 18721 Query 48669 TTGTCGCTAATCTTTTGTTTTACAGAACCCACAGACTCTGACGCCTCCACCTCCACCGTA 48728 ||||| |||||| ||| || | | | || || | || || || | ||| Sbjct 18720 TTGTCTTGAATCTTCGCTTTAACGTTTTCGATGGTATCGGATGGTTCAACTTCTAAAGTA 18661 Query 48729 ATCGTTTTTCCCGTCAAAGTTTTTACAAAAATCTGCATCGTG 48770 || || || ||||| | ||| || || |||||||||||| || Sbjct 18660 ATAGTCTTACCCGTGAGAGTCTTCACGAAAATCTGCATCTTG 18619 >seq5371 Length=18321 Score = 98.7 bits (108), Expect = 8e-16 Identities = 157/224 (70%), Gaps = 1/224 (0%) Strand=Plus/Minus Query 8972 ACAATAAACTGATATATAATTAATTAG-TACCGGTTGACCCAAACCCTCCCTCTCCGCGA 9030 ||| |||| ||||| | ||| ||| | | || || || ||||| || | | | | | Sbjct 6361 ACATTAAAGAGATATTTTATTTATTGGGTCCCTGTAGAGCCAAATCCATCATTTGCCCTT 6302 Query 9031 TTGGTGTCAGTCGTGGAAGTAACCTCTACCAGTGTGGGATAAAAGATTTGTTCACAAATT 9090 ||||| || || | |||||||| | | || ||| | ||| |||||||||| Sbjct 6301 TTGGTTTCGGTTAAACTATCAACCTCTAGTAATTCTGGGTAATAAATTACTTCACAAATT 6242 Query 9091 AATTGAGCAATCCTGTCCCCCTTATTCACGACAAAGTCTGTGTCGGAATGATTGAACAGC 9150 | ||||||||| || || || || || || ||||||||| || || |||||||| ||| Sbjct 6241 AGTTGAGCAATTCTATCACCTTTTTTAACTACAAAGTCTTGATCAGAGTGATTGAATAGC 6182 Query 9151 ACCACTCCCACGTTACCCCTGTAATCCTCATCGATCACACCAGC 9194 || | || || || || |||||||| ||||| || ||||| || Sbjct 6181 ACTATACCAACATTTCCTCTGTAATCTTCATCTATGACACCCGC 6138 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 380899246845303