Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Melitaea_20cinxia_20[genbank_20GCA_5F000716385.1_202014-07-09] 8,261 sequences; 389,907,520 total letters Query= NC_019945.1 Length=132978 Score E Sequences producing significant alignments: (Bits) Value seq566 235 5e-57 >seq566 Length=99533 Score = 235 bits (260), Expect = 5e-57 Identities = 588/882 (67%), Gaps = 21/882 (2%) Strand=Plus/Minus Query 106120 ACGCCCGTCCACCCGCGGCCGTACATGGCAACTCCTACGATTATTTTGTTGGGATCGACG 106179 ||||| ||||| || || |||||||| || ||||| ||||| || || || || | || Sbjct 71149 ACGCCAGTCCAGCCACGTCCGTACATTGCCACTCCGACGATGATCTTCTTCGGGTTCACA 71090 Query 106180 TCTTGTTTCAGCAACGCATCGACCGCGTAATGTGTTGTGTATTTTTCTTCGGAATTCCAA 106239 |||| | ||| | || | ||| || || || |||||| | |||||| Sbjct 71089 CCTTGAGCTAACAAGTATTTTACACCAAAATCGGTAGTATAAGTTTCTTTAGGATTCCAT 71030 Query 106240 CTAGGCGCATATACCGTCGTTTGATAGCCCAGATCTGT-GTTCGACCACGCCCCTTTAAA 106298 || || |||| | || || | |||||| ||| ||| ||||| || || || || Sbjct 71029 TCTGGAGCGTATAAAGGTGTCTGGTGCCCCAGAG-TGTCGTTAGACCAAGCTCCCTTGAA 70971 Query 106299 ATCGTAACTCATGAGGAAAATTTTGTCCAAATATTTTTGTGCGTCGTTATAGTTTACCAC 106358 || |||||||| |||||||| | ||||| || ||||| || | | | |||| || || Sbjct 70970 GTCATAACTCATCAGGAAAATGTGGTCCATGTAGTTTTGGGCTTTGCTGTAGTCAACTAC 70911 Query 106359 GGCAATTTTGTCGTAGCCCGCGCTTATAGCGCTGGTTAATTCGTAGAATTTGC--CCGTT 106416 |||||||| | || ||||| ||||| || |||||||| ||| | || | Sbjct 70910 CTGGATTTTGTCCCAACCAGCGCTGATAGCTGATGTCAATTCGTA---TTTCCTACCAGT 70854 Query 106417 TGCAGTTCTAA--TTCGTCTAGCATGGCGCGCAACTCTTGCAACAGCACGACATATGTTT 106474 || ||| || |||||| ||||| | || | || | || || ||| || | Sbjct 70853 TG-AGTGAGAAAGTTCGTCAAGCATTTCACGGAGTTCCTTCATGAGGTTGACGTAAACAT 70795 Query 106475 CGGCGTCGCGTTCCGCATCGCCCAAAGAAGGATTGGCCCCTTTGCCGCCTGGAAATTCCC 106534 | |||| ||| | || || | ||| || || ||||| || || || || |||| Sbjct 70794 CACCGTC---TTCTGGGCTTCCAAAGGTAGGGTTAGCGCCTTTACCACCAGGGAACTCCC 70738 Query 106535 AATCTATATCGACGCCATCAAAAAATTTCCAAACTTGCAAAAATTCCTTTACAGAATTTA 106594 |||| || || || ||||| ||||||||||| ||| | || || || || || | | Sbjct 70737 AATCAATGTCAACACCATCGAAAAATTTCCAGGTTTGAAGGAACTCTTTGACTGAGTCAA 70678 Query 106595 CAAA-CACGTT-TCTT--TTTTCAACGTCATGCATAAAATAGAAGGGGTCTGATAGCGTC 106650 | || | ||| |||| | || |||| | ||| |||| || || | | ||| Sbjct 70677 CGAAGCGAGTTCTCTTGGTCTT----GTCAGTAAAAAAGAAGAACGGATCAGCCAATGTC 70622 Query 106651 CAACCGCCTATAGACGGAAGCACTTTTAAATGCGGATTTGCCAATTTAGCCGCCATCAAC 106710 || || || ||||| ||||| | || | | || | || ||| | ||||| Sbjct 70621 CATCCTCCAATAGAAGGAAGAATCTTCAGGTCAGGTCTCGCTTGTTTCAATGACATCAGT 70562 Query 106711 TGTCCAAAGTTACCCTTGTAAGGCTCGTTCCAAGCGGACACGCCTTTTTGCGGCTTCTGT 106770 || || ||||| || ||||| || || ||||||| || | ||||| || || |||||| Sbjct 70561 TGACCGAAGTTGCCTTTGTATGGTTCATTCCAAGATGATAGACCTTTCTGAGGTTTCTGT 70502 Query 106771 ATGGCAGCCCAGGGATCGTGAATAGAAACTTTAAAATCGGCGCGCCCTTTGCATGATTTT 106830 | ||| |||||||||||||||||||| |||||||| || |||| || |||| || | Sbjct 70501 AAGGCTGCCCAGGGATCGTGAATAGATACTTTAAAGTCCTCGCGACCACTGCAAGAACGT 70442 Query 106831 TGCAAAGATTCAAAACTTCCCGGTATTGTTTTTAAGGCATCGTTTATTCCATCACCGCCG 106890 || | | || |||||||| ||| ||||| ||||| || ||||| || || Sbjct 70441 TGAAGTGCTTGGAAACTTCCTTCGATTTCCTTTAAACTGTCGTTAATGCCATCTCCACCA 70382 Query 106891 CAGATGGGAATAAAACCGTACAATAAATGTGATAAATTGGGCAGCGGGACTTTATCTACG 106950 || || ||||||||||| |||| | || | || |||||| | || || ||| ||| Sbjct 70381 CAAATTGGAATAAAACCATACAGAAGGTGAGTTAGATTGGGAATTGGTACGCGATCGACG 70322 Query 106951 GGAAAATTGCGGCCATACACGCCCCATTCGACAAAATACGCG 106992 || || || | || ||||||||||| |||||||| ||| Sbjct 70321 GGGAACTTCCTCGGGTAAACGCCCCATTCCACAAAATAAGCG 70280 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 425361969845919