Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Melitaea_20cinxia_20[genbank_20GCA_5F000716385.1_202014-07-09] 8,261 sequences; 389,907,520 total letters Query= NC_020842.1 Length=79114 Score E Sequences producing significant alignments: (Bits) Value seq538 196 2e-45 >seq538 Length=46986 Score = 196 bits (216), Expect = 2e-45 Identities = 305/436 (70%), Gaps = 0/436 (0%) Strand=Plus/Plus Query 25933 CATAAATAAATCTGGAATCCACATTGCATAAAATAAATCTCTCGCTCTCATTTCTTCTTT 25992 |||||| |||||||| ||||| | ||||| ||||| ||||| |||| | ||||||||| Sbjct 42681 CATAAACAAATCTGGTATCCATAAAGCATAGAATAATTCTCTTGCTCGTACTTCTTCTTT 42740 Query 25993 TCCGTGATTCTTTTTTAGATCTAAGAAATCAAAAATATCTGAGTGCCATGGTTCTAAATA 26052 || ||||||||||| |||||| || ||||| | ||||| |||||| ||||| ||||| Sbjct 42741 ACCAGTATTCTTTTTTAAATCTAAAAATTCAAAGACATCTGCGTGCCAAGGTTCCAAATA 42800 Query 26053 GATAGCAAAACTACCTTTTCTTTTTCCTCCACCTTGATCTACGTATCTTGCAGTTTCATT 26112 | ||||| || | ||| || |||||||| || ||||| ||||| | ||| Sbjct 42801 CACTGCAAATGCTCCAGGGCGTTTGTTACCCCCTTGATCCACATATCTGGCAGTGTTATT 42860 Query 26113 GAAAACTTTCAACATTGGAACTAATCCAGTTGAAAATCCGTTTGTGCTATGAATCTTGGA 26172 | ||| | ||||| ||||| | ||| | |||| || ||||| | | ||| | | Sbjct 42861 ATAGACTCTTAACATAGGAACAAGACCATTGGAAATCCCATTTGTACCAGCAATATAAGT 42920 Query 26173 TCCTGTCGATCTAATATCGTGAGCATGAATACCGATTCCACCAGCCCATTTTGAAATAGC 26232 |||| | | ||| || || |||||| |||||| || ||||| | || ||||| Sbjct 42921 TCCTTTAGCTCTTATGCAATGCACATGAACACCGATACCTCCAGCTGACTTGGAAATTAA 42980 Query 26233 TGCACAATCTGAAACTGTATCGAAAATTCCTTTTATGCTATCACCTTTCATTCCTAATAA 26292 |||||| | | | |||||| | ||||||| || || ||| ||||||| ||| | Sbjct 42981 TGCACATTGTTTTAGTGTATCATATATTCCTTCGATACTGTCATCTTTCATAGCTACAAG 43040 Query 26293 AAAACAAGAAGATAATTGCGAATGAGTTGTTCCTGAATTAAATAATGTCGGTGTAGCATG 26352 ||||||||||| ||||| | | || | | | ||| | ||| || | ||||| Sbjct 43041 GAAACAAGAAGACAATTGAGGTCTTGGAGTCGCAGCAGAAAACATTGTTGGGCTTGCATG 43100 Query 26353 AGTATAATATCCTTCA 26368 |||| ||||| |||| Sbjct 43101 AGTAAAATATTTTTCA 43116 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 253014523695575