Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Melitaea_20cinxia_20[genbank_20GCA_5F000716385.1_202014-07-09] 8,261 sequences; 389,907,520 total letters Query= NC_020852.1 Length=186468 Score E Sequences producing significant alignments: (Bits) Value seq538 131 2e-25 >seq538 Length=46986 Score = 131 bits (144), Expect = 2e-25 Identities = 874/1394 (63%), Gaps = 36/1394 (3%) Strand=Plus/Minus Query 75212 CCACAGTACATGTTCATGCGGGTCGCAATCGGCATCCACGGGGAAGACATTGATTCTGTC 75271 || ||| | ||| | ||||| || || | ||||| ||||||||||| || ||| | | Sbjct 43199 CCCCAGCATATGCTGATGCGTGTTGCTGTTGGCATACACGGGGAAGATATAGATGCAGCT 43140 Query 75272 TTGGAGACATACGACAAGATGTCCCAAGG-TATGTTCATTCACGCAACACCAACCCTCTT 75330 | | || ||| | | | || || ||| || | ||| |||| ||||| | || Sbjct 43139 ATAAACACTTACAATTTGTTATCTGAAAAATATTTT-ACTCATGCAAGCCCAACAATGTT 43081 Query 75331 CAATGCTGGTACACCAAGACCGCAGATGTCCAGTTGCTTCCTTATCGCCAACAAGGAGGA 75390 ||||| || |||||||| || |||| ||| |||||| | || | || || || Sbjct 43080 TTCTGCTGCGACTCCAAGACCTCAATTGTCTTCTTGTTTCCTTGTAGCTATGAAAGATGA 43021 Query 75391 CTCAATCAACGGTATCTATGGAACTCTTACGGAGTGTGCGCAAATCTCAAAGTGGGCTGG 75450 | ||| | || || |||| || || | | ||||| ||| || |||| ||||| Sbjct 43020 CAGTATCGAAGGAATATATGATACACTAAAACAATGTGCATTAATTTCCAAGTCAGCTGG 42961 Query 75451 GGGTATTGGGATGCACATCCATGATGTGAGAGCCAATAAATCTCGTATTCGGGGGACAAA 75510 ||||| || | || | ||| | ||||| || | || |||| || ||||| Sbjct 42960 AGGTATCGGTGTTCATGTGCATTGCATAAGAGCTAAAGGAACTTATATTGCTGGTACAAA 42901 Query 75511 TGGTCAATCAGATGGTATTATTCCAATGCTTCGCGTATTTAACGCCACAGCGCGCTATGT 75570 ||| || ||||| || |||| ||| | | || | ||| ||| || | ||||| Sbjct 42900 TGGGATTTCCAATGGTCTTGTTCCTATGTTAAGAGTCTATAATAACACTGCCAGATATGT 42841 Query 75571 AAATCAAGCGGGGCGT---CGCAAGGGGTCCATCGCGGTCTACTTGGAACCATGGCATGC 75627 |||||| ||| ||| || | | || || || |||||||| ||||| || Sbjct 42840 GGATCAAGGGGGTAACAAACGCCCTGGAGCATTTGCAGTGTATTTGGAACCTTGGCACGC 42781 Query 75628 CGATATCATGGAGTTCCTTGAGTTACGACTCAACCAAGGTGACGAAGAGGCTCGGTGTAG 75687 ||| || | || || | || ||| | || ||| | ||||| | || || Sbjct 42780 AGATGTCTTTGAATTTTTAGATTTAAAAAAGAATACTGGTAAAGAAGAAGTACGAGCAAG 42721 Query 75688 AGATCTCTTTTCATCCCTGTGGATTCCAGACCTTTTCATGAAGCGGGTTGAGGAGGGTGG 75747 ||| | || | | | ||||| ||||| | || ||||| ||||| || | || Sbjct 42720 AGAATTATTCTATGCTTTATGGATACCAGATTTGTTTATGAAACGGGTAGAAAAAAATGA 42661 Query 75748 TCAATGGTCTCTTTTCTGTCCAGACAAGGCACCAGGTCTCTCCGACGCGGTGGGTGAGGA 75807 | ||| |||| | ||||| |||| || || | | || |||||| || Sbjct 42660 AAATTGGAGTCTTATGTGTCCTCACAACTGCCCTGGATTGGCTGATTGTTGGGGTGAAGA 42601 Query 75808 GTTTGAAGCCCTCTACACAAAGTATGAAGAGGAGG--------GTAGAGCCAATGCGACT 75859 |||||||| | || |||||||||| | || ||| | | | | || | Sbjct 42600 ATTTGAAGCTTTATATGAAAAGTATGAACAAGAAAAACGCTATGTAAAACAAGTTCG--T 42543 Query 75860 GTACCAGCCGCCGATGTTTGGAAGGCTATTCTCAAATCACAGACGGAGACTGGAACACCA 75919 | || || | | | ||||| || || | || |||| || || ||||||||| Sbjct 42542 GCAC-AG-----GTTTTGTGGAAAGCAATAATAGAAGCACAAGTTGAAACAGGAACACCA 42489 Query 75920 TATATGCTTTACAAGGATGCTTGTAACAAGAAGAGTAACCAAAAGAATTTGGGAACAATC 75979 |||||| | || || ||| |||| |||| || ||||| ||||| ||| | || || || Sbjct 42488 TATATGTTGTATAAAGATTCTTGCAACAGAAAAAGTAATCAAAAAAATCTTGGCACTATA 42429 Query 75980 AAGAGCTCAAATCTTTGCACGGAAATTTTAGAGTACACAGATAAGGATGAGACGGCTGTT 76039 || || || |||||||| |||||| | ||||| ||| ||||| ||| || Sbjct 42428 AAATGCAGCAACCTTTGCACAGAAATTGTTGAGTATACATCACCTGATGAAGTGGCAGTG 42369 Query 76040 TGCAATTTGGCATCAATCGCCCTTCCAAAGTATGTCAATGAAGAGACTCGCACTTTTGAT 76099 |||||||| || || || || || | ||||| || || | | |||||| || Sbjct 42368 TGCAATTTAGCGTCCATAGCTGTT----AATATGT--TTGTTGAAAATAAAACTTTTAAT 42315 Query 76100 TATGAAAAACTTCATGAAATCACAAAGATTGTTACCAAAAATCTAAACCGAGTCATTGAC 76159 | | ||||| | | | | || || | |||||| ||||| |||| | ||||| Sbjct 42314 TTTCAAAAATTAAAACAGGTTACTAAAACTGTTACACAAAATTTAAATAAGATTATTGAT 42255 Query 76160 AGAAATTTTTATCCCGT-TGAGACTGCGCGAAAGTCTAATATGCGACACAGACCTATTGG 76218 || || ||||| || ||| || || || |||||| ||| || |||||||| Sbjct 42254 GTTAACTTCTATCCAGTGCCAGA-AGCAAAGAATTCGAATATGAAACATAGGCCTATTGG 42196 Query 76219 TTTGGGTGTTCAAGGTCTCGCGGATGTATTTATTTTGTGCCGCTACGCATTTGATTCAGA 76278 | |||||||| || | || |||| |||| | || | | | | ||| || Sbjct 42195 CATCGGTGTTCAGGGATTAGCAGATGCATTTGTGTTAATGAGATTTCCCTATGAGAGTGA 42136 Query 76279 TGAAGCCAAGGAGATGAATGCTCGTATCTTTGAAACCATGTATCACGCATCCCTGGAGGC 76338 ||||| | | ||| | || |||||||| || || | | | | | || || Sbjct 42135 AGAAGCAATTTTACTTAATCAACAAATATTTGAAACTATATACTATGGAGCTTTAGAAGC 42076 Query 76339 GAGTTGTGAATTGGCTGAAGCCCAAGGTTCCTATGAGACATTTGAGGGTTCTCCCGCGTC 76398 |||||||||||||| || ||||| || | | ||| || ||| || Sbjct 42075 TAGTTGTGAATTGGCAGAGAAGGAAGGTGTTTACTCTAGTTATGATGGAAGTCCTGCAAG 42016 Query 76399 CCAAGGGGTGCTTCAGTTTGATATGTGGGAAGGTGAAACCAAGCTCAAC--TACGACTGG 76456 ||||| | | || | ||| ||||||| | || || | || | | | || ||| Sbjct 42015 TCAAGGCATTTTACAATATGACATGTGGG-ACAAGACTCCTA-CTGATCTGTGGGATTGG 41958 Query 76457 GATGTTCTCAAGGAACGCAT-CAAGGAGAAGGGTCTTCGTAACAGTCTTTTGATGGCACC 76515 || | || ||| | ||| || | ||||||||||| |||||| | || || Sbjct 41957 ACTGCCTTAAAAGAAAAATTGCAA--AGCATGGTCTTCGTAATTCCCTTTTGTTAGCTCC 41900 Query 76516 AATGCCAACAGCCTCCACCGCACAAATCTTGGGTAATAATGAATGCTTTGAACCATACAC 76575 ||||||||| || ||||| ||||| || | || |||||||||| |||||||||| || Sbjct 41899 AATGCCAACTGCTTCCACAGCACAGATACTTGGAAATAATGAATCTTTTGAACCATTTAC 41840 Query 76576 AACAAACATCTACC 76589 ||||||| |||| Sbjct 41839 TTCAAACATTTACC 41826 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 596507996731680