Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Melitaea_20cinxia_20[genbank_20GCA_5F000716385.1_202014-07-09] 8,261 sequences; 389,907,520 total letters Query= NC_021246.1 Length=281182 Score E Sequences producing significant alignments: (Bits) Value seq5066 158 2e-33 seq3045 111 3e-19 seq1738 107 3e-18 seq4284 100 5e-16 seq3107 98.7 2e-15 seq4319 89.7 9e-13 seq3179 89.7 9e-13 seq2002 87.8 3e-12 seq1179 84.2 4e-11 >seq5066 Length=19128 Score = 158 bits (174), Expect = 2e-33 Identities = 177/237 (75%), Gaps = 0/237 (0%) Strand=Plus/Minus Query 193125 ATTTATATACCACCTCTCAATCGAAGTACCAGATGCAATGTAGCCTCTTTAGAAATATTA 193184 |||| |||||||| | | |||||||||| || | ||||| ||| || ||||||| Sbjct 19086 ATTTGCATACCACCACGGAGACGAAGTACCAAGTGAAGTGTAGACTCCTTTTGAATATTA 19027 Query 193185 TAGTCGGATAACGTTCTAGAATCGTCTAATTGTTTTCCGGCAAAAATTAATCTCTGTTGA 193244 ||||| |||| || | | || || | ||| || || ||||| || || | ||||||| Sbjct 19026 TAGTCTGATAGTGTACGACCGTCTTCAAGTTGCTTGCCAGCAAAGATCAAACGCTGTTGA 18967 Query 193245 TCAGGAGGTATTCCTTCTTTATCTTGTATTTTGGTTTTTATATTTAAAATAGTATCGGAA 193304 || || || || |||||||| ||||| || || | ||| | ||| |||||||| ||| Sbjct 18966 TCTGGGGGAATGCCTTCTTTGTCTTGAATCTTTGCTTTGACATTCTCGATAGTATCCGAA 18907 Query 193305 GACTCAACTTCTAGAGTTATAGTTTTACCTGTTAGCGTTTTTACAAATATTTGCATT 193361 | |||||||| || ||||||||||||||||| || ||||| || || || |||||| Sbjct 18906 GGTTCAACTTCGAGCGTTATAGTTTTACCTGTAAGAGTTTTAACGAAAATCTGCATT 18850 >seq3045 Length=163423 Score = 111 bits (122), Expect = 3e-19 Identities = 87/100 (87%), Gaps = 3/100 (3%) Strand=Plus/Minus Query 263798 AGGTCCGTAGCTACTATGTAAGCCGGTGCTGACGAGGAACCGGTCTAACTCCTTGTCATC 263857 |||||||||||||||| ||||||||||| | || ||| |||||||| |||| | |||| Sbjct 104114 AGGTCCGTAGCTACTAAGTAAGCCGGTGACGGCGGGGAGCCGGTCTACTTCCTCGCCATC 104055 Query 263858 AGATATGTTGAAGCG-TAT-AAGCAATCATATAATGGTAA 263895 ||||||||||||||| ||| |||||||||||||| ||||| Sbjct 104054 AGATATGTTGAAGCGTTATAAAGCAATCATATAA-GGTAA 104016 >seq1738 Length=321109 Score = 107 bits (118), Expect = 3e-18 Identities = 86/100 (86%), Gaps = 3/100 (3%) Strand=Plus/Minus Query 263798 AGGTCCGTAGCTACTATGTAAGCCGGTGCTGACGAGGAACCGGTCTAACTCCTTGTCATC 263857 |||||||||||||||| ||||||||||| | || ||| |||||||| ||| | |||| Sbjct 12033 AGGTCCGTAGCTACTAAGTAAGCCGGTGACGGCGGGGAGCCGGTCTACTTCCCCGCCATC 11974 Query 263858 AGATATGTTGAAGCG-TAT-AAGCAATCATATAATGGTAA 263895 ||||||||||||||| ||| |||||||||||| ||||||| Sbjct 11973 AGATATGTTGAAGCGTTATAAAGCAATCATAT-ATGGTAA 11935 >seq4284 Length=71485 Score = 100 bits (110), Expect = 5e-16 Identities = 93/113 (82%), Gaps = 4/113 (4%) Strand=Plus/Plus Query 263786 TATAATAAAGGGA-GGTCCGTAGCTACTATGTAAGCCGGTGCTGACGAGGAACCGGTCTA 263844 |||| | ||||| ||||||||||||||| ||||||||||| | || ||| || ||||| Sbjct 56703 TATACGACAGGGAAGGTCCGTAGCTACTAAGTAAGCCGGTGACGGCGGGGAGCCAGTCTA 56762 Query 263845 ACTCCTTGTCATCAGATATGTTGAAGCG-TAT-AAGCAATCATATAATGGTAA 263895 ||| | ||||||||||||||||||| ||| |||||||||||| |||||| Sbjct 56763 CTTCCCCGCCATCAGATATGTTGAAGCGTTATAAAGCAATCATAT-TTGGTAA 56814 >seq3107 Length=164852 Score = 98.7 bits (108), Expect = 2e-15 Identities = 84/100 (84%), Gaps = 3/100 (3%) Strand=Plus/Minus Query 263798 AGGTCCGTAGCTACTATGTAAGCCGGTGCTGACGAGGAACCGGTCTAACTCCTTGTCATC 263857 |||||| ||||||||| |||||| |||| ||| ||| |||||||| ||| | |||| Sbjct 50287 AGGTCCATAGCTACTAAGTAAGCTGGTGACCACGGGGAGCCGGTCTACTTCCCCGCCATC 50228 Query 263858 AGATATGTTGAAGCG-TAT-AAGCAATCATATAATGGTAA 263895 ||||||||||||||| ||| |||||||||||| ||||||| Sbjct 50227 AGATATGTTGAAGCGTTATAAAGCAATCATAT-ATGGTAA 50189 >seq4319 Length=48343 Score = 89.7 bits (98), Expect = 9e-13 Identities = 108/147 (73%), Gaps = 0/147 (0%) Strand=Plus/Minus Query 159883 AAATATCCGATGAAGTAATTCATCTATTATTTTCTGCAAATAGATGGGAAAAATATAATG 159942 || |||| ||||||| ||||||||| | || || || ||| | |||||||| ||| Sbjct 33178 AATTATCTGATGAAGCAATTCATCTGCTGTTCTCAGCGAATCGTTGGGAAAATGCAAATT 33119 Query 159943 AAATAATTAAAACGTTAGAAATGGGTATTACTATAATTATGGATAGATATTGCTATTCCG 160002 | || || |||| |||| || |||| ||||| || |||| |||||||||||||| | Sbjct 33118 ACATTATAAAAATGTTAAAAGCAGGTACCACTATTATCGTGGACAGATATTGCTATTCTG 33059 Query 160003 GAGTAGCTTATTCAGCATCTAAAGGTA 160029 |||| || | | ||| | ||||||| Sbjct 33058 GAGTTGCATTTAGTGCAGCGAAAGGTA 33032 >seq3179 Length=96931 Score = 89.7 bits (98), Expect = 9e-13 Identities = 84/103 (82%), Gaps = 3/103 (3%) Strand=Plus/Plus Query 263795 GGGAGGTCCGTAGCTACTATGTAAGCCGGTGCTGACGAGGAACCGGTCTAACTCCTTGTC 263854 || |||||||||||||||| ||||||||||| | || ||| |||||||| ||| | Sbjct 83471 GGAAGGTCCGTAGCTACTAAGTAAGCCGGTGACGGCGGGGAGCCGGTCTACTTCCCCGCT 83530 Query 263855 ATCAGATATGTTGAAGCG-TAT-AAGCAATCATATAATGGTAA 263895 |||| |||| |||||||| ||| || ||||||||| ||||||| Sbjct 83531 ATCAAATATATTGAAGCGTTATAAAACAATCATAT-ATGGTAA 83572 >seq2002 Length=367369 Score = 87.8 bits (96), Expect = 3e-12 Identities = 86/107 (80%), Gaps = 7/107 (7%) Strand=Plus/Minus Query 263795 GGGAGGTCCGTAGCTACTAT----GTAAGCCGGTGCTGACGAGGAACCGGTCTAACTCCT 263850 || |||||||||||||||| ||||||||||| | || ||| |||||||| ||| Sbjct 337739 GGAAGGTCCGTAGCTACTACCTAAGTAAGCCGGTGACGGCGGGGAGCCGGTCTACTTCCC 337680 Query 263851 TGTCATCAGATATGTTGAAGCG-TAT-AAGCAATCATATAATGGTAA 263895 | |||||||||| |||||||| ||| |||||||| || |||||||| Sbjct 337679 CGCCATCAGATATTTTGAAGCGTTATAAAGCAATCTTA-AATGGTAA 337634 >seq1179 Length=8922 Score = 84.2 bits (92), Expect = 4e-11 Identities = 88/111 (79%), Gaps = 11/111 (10%) Strand=Plus/Minus Query 263795 GGGAGG-TCCGTAGCTACTATGTAAGCCGGT-------GCTGACGAGGAACCGGTCTAAC 263846 |||||| ||||||| ||||| |||||||| | || | || ||| |||||||| Sbjct 1365 GGGAGGGTCCGTAGTTACTAAGTAAGCCGTTAGCCGATGCAGGCGGGGAGCCGGTCTACT 1306 Query 263847 TCCTTGTCATCAGATATGTTGAAGCG-TAT-AAGCAATCATATAATGGTAA 263895 |||| | |||||||||||||| |||| ||| |||||||||||| ||||||| Sbjct 1305 TCCTCGCCATCAGATATGTTGGAGCGTTATAAAGCAATCATAT-ATGGTAA 1256 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 899561499437520