Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Melitaea_20cinxia_20[genbank_20GCA_5F000716385.1_202014-07-09] 8,261 sequences; 389,907,520 total letters Query= NC_021248.1 Length=307691 Score E Sequences producing significant alignments: (Bits) Value seq5066 141 2e-28 seq1957 104 5e-17 >seq5066 Length=19128 Score = 141 bits (156), Expect = 2e-28 Identities = 172/232 (74%), Gaps = 2/232 (1%) Strand=Plus/Minus Query 192307 ATACCACCTCTAAGACGTAATACTAAATGTAAAGTAGCCTC-TTTAGAGATATTATAATC 192365 |||||||| | ||||| | ||| || || | |||| ||| ||| || |||||||| || Sbjct 19080 ATACCACCACGGAGACGAAGTACCAAGTGAAGTGTAGACTCCTTTTGA-ATATTATAGTC 19022 Query 192366 AGATAATGTTCGTTCATCATCCAATTGTTTACCAGCAAAGATTAATCTCTGTTGATCAGG 192425 |||| ||| || | || || | ||| || ||||||||||| || | ||||||||| || Sbjct 19021 TGATAGTGTACGACCGTCTTCAAGTTGCTTGCCAGCAAAGATCAAACGCTGTTGATCTGG 18962 Query 192426 TGGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGAATCTGACGATTC 192485 || || |||||||| ||||| || || ||| ||||| |||| ||| || | ||| Sbjct 18961 GGGAATGCCTTCTTTGTCTTGAATCTTTGCTTTGACATTCTCGATAGTATCCGAAGGTTC 18902 Query 192486 TACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATAAATATCTGCATT 192537 ||||| || || || |||||||| || | ||||||| || ||||||||| Sbjct 18901 AACTTCGAGCGTTATAGTTTTACCTGTAAGAGTTTTAACGAAAATCTGCATT 18850 >seq1957 Length=467265 Score = 104 bits (114), Expect = 5e-17 Identities = 161/228 (71%), Gaps = 4/228 (2%) Strand=Plus/Minus Query 49843 AACCCTCGTCCCTAGATATAAATTCATTACTAAAAGTTAATCCTGGCATTAATCCTCTCT 49902 || |||| ||||| || || | ||||| || ||||| ||||||||||| | ||| |||| Sbjct 419636 AAACCTCATCCCTTGAAATCAGCTCATTGCTGAAAGTCAATCCTGGCATAAGTCCCCTCT 419577 Query 49903 TTTTAAGCCAAAATATTGATGCAAAACTACTAGAAAAGAATATACCCTCGACACACGCAA 49962 | || ||||| |||||||||||||| || | ||| |||||||| || || || |||| Sbjct 419576 TCTTGAGCCAGAATATTGATGCAAAGCTTCCAGAGAAGAATATGCCTTCAACTGCAGCAA 419517 Query 49963 ATGCTATTATTCTTGCTCCAAACATT--AATTTATCATCTAATATCCAATTTATAGCCCA 50020 | |||| || | | | || || || | | | | | | ||||| | |||||||| Sbjct 419516 AAGCTACAATACGTTCACCGAAAGTTGCAGTCTTGCTTGCA--ATCCATTGCATAGCCCA 419459 Query 50021 ATCTGCtttttttttGATAGAAGGTATATTTTCTATAGCTTTAAATAA 50068 || || || || || | | | |||| | || ||||| ||||| || Sbjct 419458 GTCAGCCTTCTTCTTTACACAGGGTAATGTCTCAATAGCATTAAACAA 419411 Score = 102 bits (112), Expect = 2e-16 Identities = 98/126 (78%), Gaps = 0/126 (0%) Strand=Plus/Plus Query 49843 AACCCTCGTCCCTAGATATAAATTCATTACTAAAAGTTAATCCTGGCATTAATCCTCTCT 49902 || |||| ||||| || || | ||||| || ||||| ||||||||||| | ||| |||| Sbjct 418610 AAACCTCATCCCTTGAAATCAGCTCATTGCTGAAAGTCAATCCTGGCATAAGTCCCCTCT 418669 Query 49903 TTTTAAGCCAAAATATTGATGCAAAACTACTAGAAAAGAATATACCCTCGACACACGCAA 49962 | || ||||| |||||||||||||| || | ||| |||||||| || || || |||| Sbjct 418670 TCTTGAGCCAGAATATTGATGCAAAGCTTCCAGAGAAGAATATGCCTTCAACTGCAGCAA 418729 Query 49963 ATGCTA 49968 | |||| Sbjct 418730 AAGCTA 418735 Score = 98.7 bits (108), Expect = 2e-15 Identities = 128/176 (73%), Gaps = 6/176 (3%) Strand=Plus/Minus Query 50106 ATTAATAAAGAATACATTTCAGAATGTACAGCTTCCATAGCTATTTGAAATGAATAAAAT 50165 ||||| ||||| ||||| || || |||||| ||||||||| || ||||| ||| || Sbjct 419060 ATTAACAAAGAGTACATCTCTGAGTGTACATTTTCCATAGCAATCTGAAAGCCATAGAAA 419001 Query 50166 TGTCTTGCTTCTGAATACTGAACTTCG---GAAAAGAATCGTTCAACTAAATTCTCAGAT 50222 || ||||||| ||| ||||| |||||| ||||| || | |||||| Sbjct 419000 CACCTAGCTTCTGTCACCTGCACTTCTTGTGAAAAG---CGTTCCACAAGGTTCTCATTG 418944 Query 50223 ACAATACCATCAGATGCTGCGAAGAATGCTAAAACGTATTTAATAAAATGTTTTTC 50278 || || ||||| ||||| || ||||| ||||| || | ||||| ||||||||||| Sbjct 418943 ACTATGCCATCTGATGCAGCAAAGAACGCTAATACATGCTTAATGAAATGTTTTTC 418888 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 984375798637350