Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Melitaea_20cinxia_20[genbank_20GCA_5F000716385.1_202014-07-09] 8,261 sequences; 389,907,520 total letters Query= NC_021249.1 Length=282895 Score E Sequences producing significant alignments: (Bits) Value seq5066 118 2e-21 seq1957 100 5e-16 >seq5066 Length=19128 Score = 118 bits (130), Expect = 2e-21 Identities = 166/233 (71%), Gaps = 0/233 (0%) Strand=Plus/Minus Query 171840 ATACCACCTCTAAGTCGTAATACTAAATGTAAAGTAGCCTCTTTAGAAATATTATAATCT 171899 || ||||| | ||| || | || | |||||| |||| ||||| ||| |||||||| Sbjct 18852 ATTCCACCACGAAGCCGGAGAACCAGATGTAAGGTAGATTCTTTTTGAATGTTATAATCG 18793 Query 171900 GATAAAGATCGTTCGTCATCCAATTGTTTACCAGCAAAAATTAATCTCTGTTGGTCAGGT 171959 ||||| | ||| | || || | || || ||||||||||| || | || || || || Sbjct 18792 GATAAGGTTCGACCATCTTCAAGCTGCTTTCCAGCAAAAATCAAACGTTGCTGATCTGGG 18733 Query 171960 GGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGTATCTGACGATTCT 172019 || || |||||||| ||||| || || ||| || || || ||||| || | ||| Sbjct 18732 GGAATGCCTTCTTTGTCTTGAATCTTCGCTTTAACGTTTTCGATGGTATCGGATGGTTCA 18673 Query 172020 ACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATGAATATCTGCATTTT 172072 ||||||| |||||| || ||||| || | || || | ||| |||||||| || Sbjct 18672 ACTTCTAAAGTAATAGTCTTACCCGTGAGAGTCTTCACGAAAATCTGCATCTT 18620 >seq1957 Length=467265 Score = 100 bits (110), Expect = 5e-16 Identities = 99/127 (78%), Gaps = 1/127 (1%) Strand=Plus/Plus Query 39144 AAACCTTCGTCCCTAGATATAAATTCATTACTAAAAGTTAATCCTGGCATTAATCCTCTC 39203 |||||| | ||||| || || | ||||| || ||||| ||||||||||| | ||| ||| Sbjct 418610 AAACCT-CATCCCTTGAAATCAGCTCATTGCTGAAAGTCAATCCTGGCATAAGTCCCCTC 418668 Query 39204 TTTTTAAGCCAAAATATTGATGCAAAACTACTAGAAAAGAATATACCCTCCACACACGCA 39263 || || ||||| |||||||||||||| || | ||| |||||||| || || || ||| Sbjct 418669 TTCTTGAGCCAGAATATTGATGCAAAGCTTCCAGAGAAGAATATGCCTTCAACTGCAGCA 418728 Query 39264 AATGCTA 39270 || |||| Sbjct 418729 AAAGCTA 418735 Score = 100 bits (110), Expect = 5e-16 Identities = 99/127 (78%), Gaps = 1/127 (1%) Strand=Plus/Minus Query 39144 AAACCTTCGTCCCTAGATATAAATTCATTACTAAAAGTTAATCCTGGCATTAATCCTCTC 39203 |||||| | ||||| || || | ||||| || ||||| ||||||||||| | ||| ||| Sbjct 419636 AAACCT-CATCCCTTGAAATCAGCTCATTGCTGAAAGTCAATCCTGGCATAAGTCCCCTC 419578 Query 39204 TTTTTAAGCCAAAATATTGATGCAAAACTACTAGAAAAGAATATACCCTCCACACACGCA 39263 || || ||||| |||||||||||||| || | ||| |||||||| || || || ||| Sbjct 419577 TTCTTGAGCCAGAATATTGATGCAAAGCTTCCAGAGAAGAATATGCCTTCAACTGCAGCA 419518 Query 39264 AATGCTA 39270 || |||| Sbjct 419517 AAAGCTA 419511 Score = 96.9 bits (106), Expect = 6e-15 Identities = 123/168 (73%), Gaps = 6/168 (4%) Strand=Plus/Minus Query 39416 AGAATACATTTCAGAATGTACAGCTTCCATAGCTATTTGAAATGAATAAAATTGCCTTGC 39475 ||| ||||| || || |||||| ||||||||| || ||||| ||| || ||| || Sbjct 419052 AGAGTACATCTCTGAGTGTACATTTTCCATAGCAATCTGAAAGCCATAGAAACACCTAGC 418993 Query 39476 TTCTGAATACTGAACTTCG---GAAAAGAATCGTTCAACTAAATTCTCAGATACAATACC 39532 ||||| ||| ||||| |||||| ||||| || | |||||| || || || Sbjct 418992 TTCTGTCACCTGCACTTCTTGTGAAAAG---CGTTCCACAAGGTTCTCATTGACTATGCC 418936 Query 39533 ATCAGATGCTGCGAAGAATGCTAAAACATATTTAATAAAATGTTTTTC 39580 ||| ||||| || ||||| ||||| |||| ||||| ||||||||||| Sbjct 418935 ATCTGATGCAGCAAAGAACGCTAATACATGCTTAATGAAATGTTTTTC 418888 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 905042533393800