Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Melitaea_20cinxia_20[genbank_20GCA_5F000716385.1_202014-07-09] 8,261 sequences; 389,907,520 total letters Query= NC_021312.1 Length=459984 Score E Sequences producing significant alignments: (Bits) Value seq538 167 7e-36 seq2606 98.7 3e-15 seq1859 91.5 4e-13 seq374 89.7 2e-12 >seq538 Length=46986 Score = 167 bits (184), Expect = 7e-36 Identities = 688/1063 (65%), Gaps = 34/1063 (3%) Strand=Plus/Plus Query 155399 AAATGTGTCGGCTAAACCCTGAACTCCAATACCGACTGGGCGATGCCTGTAATTGCTCCT 155458 ||||| || ||||| |||||||| || || || | || | ||| | ||| | | Sbjct 42165 AAATGCATCTGCTAATCCCTGAACACCGATGCCAATAGGCCTATGTTTCATATT-CGAAT 42223 Query 155459 GCTTGTCTTCTTGTT-TGGGTAAAAATTCACATCAATAATGTTATTTAAATT---TGTAA 155514 ||| ||||| | ||| || || || ||||||||||| ||||||||||| ||||| Sbjct 42224 TCTTTGCTTCTGGCACTGGATAGAAGTTAACATCAATAATCTTATTTAAATTTTGTGTAA 42283 Query 155515 CCAATACCTTGGTTACGTCTGCTAATTTCACATAGTCAAATGTTTTATCCTCATTTACAA 155574 || | || || || | | |||||| | | | ||| ||||||| ||| |||| Sbjct 42284 -CAGT--TTTAGTAACCTGTTTTAATTTTTGAAAATTAAAAGTTTTATTTTCA---ACAA 42337 Query 155575 ACATACCAAGACCAATAGACGCCAGATTACATACCGCAGTCTCCTTGTCGTCGCTGTAT- 155633 ||||| || | | || ||||| | ||| || || || || | | || | ||||| Sbjct 42338 ACATATTAACAGCTATGGACGCTAAATTGCACACTGC-CACTTCATCAGGT-GATGTATA 42395 Query 155634 -TCTACAATCTCACAGCACAGGTTAGAACTCTTGATGGTGCCTAAATTCTTCTGGTTAGA 155692 || ||||| || ||| ||||| | || || ||||| | ||| || || ||| Sbjct 42396 CTCAACAATTTCTGTGCAAAGGTTGCTGCATTTTATAGTGCCAAGATTTTTTTGATTACT 42455 Query 155693 TTTACTGTTACAAGCATCCTTGTATAGAATGTATGGGGTTCCTGTCTCCATCTGTGCGTC 155752 ||| ||||| |||| ||| || || | || ||||| |||||||| || | ||||| || Sbjct 42456 TTTTCTGTTGCAAGAATCTTTATACAACATATATGGTGTTCCTGTTTCAACTTGTGCTTC 42515 Query 155753 CAGAAT--CTTTAGCCAGAGGTCACGGGCATTAATTTGCTTGTTGTATCTGCCTTCCGAC 155810 | || |||| ||| | | | ||| || ||| || || | ||| Sbjct 42516 TATTATTGCTTT--CCACAAAACCTGTGCACGAACTTGTTTTACATAGCGTTTTTCTTGT 42573 Query 155811 TCATA--TTTCATATACAGCGTTCGGTAATCCTCACCGTAACAATCACTCAGTCCAGGGC 155868 ||||| ||||||||| ||| ||| | || ||||| |||||||| || |||||||| Sbjct 42574 TCATACTTTTCATATAAAGC-TTC-AAATTCTTCACCCCAACAATCAGCCAATCCAGGGC 42631 Query 155869 ACTTATCGGGGCAAAACAGCGACCAAATTTTATTACCGATTACACGCTCCATAAATACAT 155928 | || | || || | || |||| ||| ||| ||| || | |||||| | || Sbjct 42632 AGTTGTGAGGACACATAAGACTCCAATTTTCATTTTTTTCTACCCGTTTCATAAACAAAT 42691 Query 155929 CACTCGCCCAAATAGCATAGAAAAGGTCCCTTGCCTTTGACTCCTCATCGCCGTGATTCT 155988 | ||| | ||||||||| | || ||||| | || || | || ||||| Sbjct 42692 CTGGTATCCATAAAGCATAGAATAATTCTCTTGCTCGTACTTCTTCTTTACCAGTATTCT 42751 Query 155989 TCCGTAGCTCTAAGAATTCCTCAATATCAGGATGGTGTGGCTCCAGATACATAGCAAAAC 156048 | || ||||| ||||| | ||| | || || |||| ||||| ||||| Sbjct 42752 TTTTTAAATCTAAAAATTCAAAGACATCTGCGTGCCAAGGTTCCAAATACACTGCAAATG 42811 Query 156049 TACCATTCC---TCTTGCCACCCTGATCTACATACCGAGCAGTCTTATTGAAGACACCTA 156105 ||| | | || || || ||||| ||||| | ||||| ||||| |||| | || Sbjct 42812 CTCCAGGGCGTTTGTTACCCCCTTGATCCACATATCTGGCAGTGTTATTATAGACTCTTA 42871 Query 156106 GCATAGGAATAATACCATTGGAAGTGCCATTGGTTCCGCGAATATGCGAACCAGATGAGC 156165 |||||||| || |||||||||| | ||||| || || ||||| | || | ||| Sbjct 42872 ACATAGGAACAAGACCATTGGAAATCCCATTTGTACCAGCAATATAAGTTCC--TTTAGC 42929 Query 156166 GAACAT--TATGAATATGTAGTCCAATACCACCTGACCATTTAGAAATTTGAGCGCATTC 156223 || ||| | ||| | || ||||| || | | || |||||| || |||| Sbjct 42930 TCTTATGCAATGCACATGAACACCGATACCTCCAGCTGACTTGGAAATTAATGCACATTG 42989 Query 156224 CTTTACAGTATTGAAAATACCTTCAATAGAATCATCTTCCATTGATAGTAGATAGCACGA 156283 |||| |||| | || ||||| ||| ||||||| ||| | || || | || || Sbjct 42990 TTTTAGTGTATCATATATTCCTTCGATACTGTCATCTTTCATAGCTACAAGGAAACAAGA 43049 Query 156284 ACTTAATTGAGGTCGTGGTGTTCCAGCGTTGAATAGTGTAGGTGTTGCATGAATAAAATA 156343 | |||||||||| ||| || |||| || | ||| || |||||||| ||||||| Sbjct 43050 AGACAATTGAGGTCTTGGAGTCGCAGCAGAAAACATTGTTGGGCTTGCATGAGTAAAATA 43109 Query 156344 CTTATTAGACATATAATCGTATGTCTCCTTA-ATCTTC-TCAAGATTAGACCCGTGAATA 156401 || | ||| | ||| ||| || | ||| | || | || | || |||||| || Sbjct 43110 TTTTTCAGATAACAAATTGTAAGTGT--TTATAGCTGCATCTATATCTTCCCCGTGTATG 43167 Query 156402 CAGATAGAGACCCTCATCCACATATGCTGAGGACGCTCTACAA 156444 | | || || | |||| ||||||||| || || ||| ||| Sbjct 43168 CCAACAGCAACACGCATCAGCATATGCTGGGGTCGTTCTGCAA 43210 >seq2606 Length=145689 Score = 98.7 bits (108), Expect = 3e-15 Identities = 183/269 (68%), Gaps = 0/269 (0%) Strand=Plus/Plus Query 302575 TCCATACTCTTGATTAAACGACGCTGAATATAACCAGTTGTAGATGTTTTTACAGCTGTA 302634 |||||| ||| |||||||| | ||||||||||| ||| || ||||||||||| ||| Sbjct 116237 TCCATAGCCTTTATTAAACGTCTTTGAATATAACCCGTTTCAGCGGTTTTTACAGCAGTA 116296 Query 302635 TCAATTAGACCAACACGACCACCCATAGCATGGAAGAATAGCTCTTCCGGTCGTAGCCCC 302694 ||||| ||||| ||||||| |||||||| ||||| | | || ||| | || Sbjct 116297 TCAATAAGACCCTCACGACCCCCCATAGCGTGGAAATAAAATTCGGAAGGTGTCAAACCA 116356 Query 302695 CCAATAAAGGAGCTCTCAACGAAACCACGCGCCTCGGGCGAATCGTCGAACTTGGTAAAG 302754 ||| | ||| | || |||||||| | | || || || ||| || | || Sbjct 116357 GCAAGGTATGAGTTTTCTACGAAACCTCTTGATTCAGGACCATAATCGTCTTTAATGAAA 116416 Query 302755 TGTGGCAGGGTCCTGTTCTCATAGCCGTATGGGATACGCTTTCCATCAACGTTCTGCTGT 302814 || |||| || || || |||| | || ||||| ||||| || ||||| || || Sbjct 116417 TGAGGCAATGTTCTTTTACGGAAGCCAAACGGAATACGTTTTCCTTCTACGTTTTGTTGA 116476 Query 302815 CCCAGGCACGAAATCATCTGCGAAATATT 302843 || | || | ||| | ||| |||||||| Sbjct 116477 CCTACACAGGCAATAACCTGAGAAATATT 116505 >seq1859 Length=410201 Score = 91.5 bits (100), Expect = 4e-13 Identities = 146/207 (71%), Gaps = 2/207 (1%) Strand=Plus/Plus Query 251839 TGGGCGATAGTCATACGACTGGGAATAGCATGGGGATTGATGATGATGTCGGGTTTCAGT 251898 ||| | || ||||||||| ||||| ||||| |||||||| || || || || | | Sbjct 339823 TGGCCAATTGTCATACGAGATGGAATGGCATGAGGATTGATAATAATATCAGGAGTAATA 339882 Query 251899 CCATCAGCAGTGAAGGGCATATCCTTTTCCTCAATAATGT-TTCCAATAGTTCCCTTTTG 251957 || ||| ||| || |||||||| | || | | ||| || ||||| |||||||||||| Sbjct 339883 CCCTCACAAGTAAAAGGCATATCTTCTTGC-CTATACTGAATTCCACAAGTTCCCTTTTG 339941 Query 251958 TCCGTGACGAGAACTGAACTTATCACCAATAACAGGACGGCGAACACTACGAAGGCGAAC 252017 ||||||||| || ||| || || || || ||| || || ||| | |||| Sbjct 339942 TCCGTGACGCGATGCGAATTTGTCGCCTATTTGCGGAATACGTACTGAACGTACTCGAAT 340001 Query 252018 CTTACAGAAGTTGTAACCATCACCGTT 252044 ||||| || || || ||||||| ||| Sbjct 340002 TTTACAAAATTTATATCCATCACTGTT 340028 Score = 86.0 bits (94), Expect = 2e-11 Identities = 130/185 (70%), Gaps = 0/185 (0%) Strand=Plus/Plus Query 252505 GGGTAAGATAGAACATATGCTGTCTTATCCATCCTATTATCATAATTTGTAACATACATA 252564 |||||| | || |||| ||| ||||||| || | |||| |||| ||| | | Sbjct 340501 GGGTAATAAAGCACATGCGCTAGGGTATCCATTCTGACGTGGAAATTCGTAATATAGACA 340560 Query 252565 CCAAGCGCCTGCTTTCCCATAGCACTCTGGTAAGTATTTCTGGGAGACTGATTGTTTTCC 252624 || | || ||||| ||||||||||| || |||||||| || ||| ||||| | || Sbjct 340561 CCCATAGCTTGCTTACCCATAGCACTTTGATAAGTATTCCTAGGACTTTGATTATGATCA 340620 Query 252625 GGGAAAGGAATGCATGATGCTACAACACCGAAGATAGTGCTTGGGTGAATTTCACAGTGA 252684 || || ||||| || || |||||| || || || ||| ||||||||||||||| Sbjct 340621 GGAAATGGAATAATAGAAGCGCAAACACCTAATATCATGGCTGGATGAATTTCACAGTGA 340680 Query 252685 CTGTA 252689 |||| Sbjct 340681 GTGTA 340685 Score = 86.0 bits (94), Expect = 2e-11 Identities = 130/185 (70%), Gaps = 0/185 (0%) Strand=Plus/Minus Query 252505 GGGTAAGATAGAACATATGCTGTCTTATCCATCCTATTATCATAATTTGTAACATACATA 252564 |||||| | || |||| ||| ||||||| || | |||| |||| ||| | | Sbjct 353875 GGGTAATAAAGCACATGCGCTAGGGTATCCATTCTGACGTGGAAATTCGTAATATAGACA 353816 Query 252565 CCAAGCGCCTGCTTTCCCATAGCACTCTGGTAAGTATTTCTGGGAGACTGATTGTTTTCC 252624 || | || ||||| ||||||||||| || |||||||| || ||| ||||| | || Sbjct 353815 CCCATAGCTTGCTTACCCATAGCACTTTGATAAGTATTCCTAGGACTTTGATTATGATCA 353756 Query 252625 GGGAAAGGAATGCATGATGCTACAACACCGAAGATAGTGCTTGGGTGAATTTCACAGTGA 252684 || || ||||| || || |||||| || || || ||| ||||||||||||||| Sbjct 353755 GGAAATGGAATAATAGAAGCGCAAACACCTAATATCATGGCTGGATGAATTTCACAGTGA 353696 Query 252685 CTGTA 252689 |||| Sbjct 353695 GTGTA 353691 Score = 86.0 bits (94), Expect = 2e-11 Identities = 130/185 (70%), Gaps = 0/185 (0%) Strand=Plus/Plus Query 252505 GGGTAAGATAGAACATATGCTGTCTTATCCATCCTATTATCATAATTTGTAACATACATA 252564 |||||| | || |||| ||| ||||||| || | |||| |||| ||| | | Sbjct 354755 GGGTAATAAAGCACATGCGCTAGGGTATCCATTCTGACGTGGAAATTCGTAATATAGACA 354814 Query 252565 CCAAGCGCCTGCTTTCCCATAGCACTCTGGTAAGTATTTCTGGGAGACTGATTGTTTTCC 252624 || | || ||||| ||||||||||| || |||||||| || ||| ||||| | || Sbjct 354815 CCCATAGCTTGCTTACCCATAGCACTTTGATAAGTATTCCTAGGACTTTGATTATGATCA 354874 Query 252625 GGGAAAGGAATGCATGATGCTACAACACCGAAGATAGTGCTTGGGTGAATTTCACAGTGA 252684 || || ||||| || || |||||| || || || ||| ||||||||||||||| Sbjct 354875 GGAAATGGAATAATAGAAGCGCAAACACCTAATATCATGGCTGGATGAATTTCACAGTGA 354934 Query 252685 CTGTA 252689 |||| Sbjct 354935 GTGTA 354939 >seq374 Length=146423 Score = 89.7 bits (98), Expect = 2e-12 Identities = 216/325 (66%), Gaps = 4/325 (1%) Strand=Plus/Plus Query 289021 CtttttttACCAACAGCATCAATTTCGTCAATGAAAATCACACACGGAGAATTTTGTCTC 289080 || ||| | || || ||||| ||||| ||||| |||| | || || | || | | Sbjct 44778 CTCTTTCTGCCCACGGCATCTATTTCATCAATAAAAAGAATGCATGGTGCATGCTTACGG 44837 Query 289081 GCAAT--TGCAAATAATTCTCTTACACGGGATGCTCCAAGACCAACATACATTTCTACAA 289138 || || || | ||| || || || | |||| || | ||| ||| ||||||||| || Sbjct 44838 GCCATGTTGAACATA--TCCCTAACTCTTGATGGACCCACACCTACAAACATTTCTAAAA 44895 Query 289139 ATTCAGAAGCGGATACTTGAATGAATGTTACATTTGCTTCGCCTGCTACTGCCCTCGCCA 289198 | || || | || ||| || ||| | ||||||||||| |||||| ||| | || | Sbjct 44896 ACTCCGACCCTGACACTGTAAGGAAAGGGACATTTGCTTCTCCTGCTGTAGCCTTAGCAA 44955 Query 289199 GAAGTGTCTTACCTGTTCCAGGTGGTCCCTCTAATAGAACTCCCTTTGGTACTTTTGCCC 289258 | | || || || || |||||||| || | || ||||||| |||| ||| || | Sbjct 44956 GTAAAGTTTTTCCAGTACCAGGTGGGCCGGTAAGTAAGGCTCCCTTAGGTATTTTAGCTC 45015 Query 289259 CAGCAGACTTATATTTCTCAGGGCTCTTTAAAAATTCTACAATTTCCTCAAGTTCATATT 289318 | | |||||| || || | || || || | ||||| |||| || ||| | Sbjct 45016 CTAAATCAATATATTGCTGTGGATTTTTCAAGAAGTTTACAAATTCCATAATCTCAATCT 45075 Query 289319 TTGCCTCATCACATCCTGCTACATC 289343 | || || ||||| || |||||||| Sbjct 45076 TAGCTTCTTCACAACCAGCTACATC 45100 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1471661816845957