Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Melitaea_20cinxia_20[genbank_20GCA_5F000716385.1_202014-07-09] 8,261 sequences; 389,907,520 total letters Query= NC_021923.1 Length=140633 Score E Sequences producing significant alignments: (Bits) Value seq538 268 8e-67 seq566 221 1e-52 seq5066 159 3e-34 >seq538 Length=46986 Score = 268 bits (296), Expect = 8e-67 Identities = 1151/1801 (64%), Gaps = 45/1801 (2%) Strand=Plus/Plus Query 138154 TTATCTACAGTAAACTTTATGGCATCAGCGGCTGGTTTCGTTCTCAGATAATACATTCCC 138213 ||||| |||||||| | || |||| ||| |||||||| || | | ||| |||||||| Sbjct 41441 TTATCAACAGTAAATTGAATAGCATTAGCAGCTGGTTTAGTACGTAAATAGTACATTCCA 41500 Query 138214 GTTTTTAA-CCCATTTTCCCAGGCGTACATGTGTATCGAAGTGAGTAACGCGTAAGTCGG 138272 ||||| || ||||| |||| || | || | ||||| || || | | | ||| | || Sbjct 41501 GTTTTCAATCCCATCTTCCAAG-CATAGAAATGTATAGATGTTAATTTTCCATAATTTGG 41559 Query 138273 TTTCGCCAGAAATATGTTAAACGATTGACTCTGATCGATGAAAGCGCCTCGATCAATGGC 138332 || || | | || ||||| || ||||||||||| || || || |||| ||| || Sbjct 41560 TTCAGCTACATGAATATTAAATGACTGACTCTGATCAATAAACGCTCCTCTATCTGCAGC 41619 Query 138333 CATGT---TAATTAAATTTTTACTTTTCATCTCCCACACGGTCTTGTATAGATCACGAAT 138389 ||| | || || |||| || | || ||||| || |||||||||| || | || Sbjct 41620 CATTTGTATAGTT--GTTTTCAC-TGAAATTTCCCAAACTGTCTTGTATAAGTCCCTTAT 41676 Query 138390 ATGTCGCGGTATTGTTGCAATATTTTGAATGCTCCCGTTGGCCGCAATGATGCGATTTCT 138449 | | || || || |||||||||| || || ||| ||| || |||| | Sbjct 41677 TTTTTTTGGAATCTTTTCAATATTTTGTATAGATCCATTGTTGTGAATTATCAAATTTTT 41736 Query 138450 CATGTCATCGTTGTACAGATTCAACTT-GATCAAGTCGTTTATCAGATATCTGTTTATGA 138508 ||| || || | | | | ||| ||| | | || || ||| |||| ||| | | Sbjct 41737 CATATCTTCATCCCATA-AGTCAGCTTGGGTTAAATCTGTTAAGAGATGATGGTTAACAA 41795 Query 138509 CCTGAAATTCACCGGCCAATACTCGACGAACGTAAATGTTGTTGGTGAAAGGCTCAAACG 138568 | ||||| ||||| | ||||| || || ||||||||| || || || ||||| | Sbjct 41796 CTTGAAACTCACCAGATAATACCCGGCGTTGGTAAATGTTTGAAGTAAATGGTTCAAAAG 41855 Query 138569 ATTCGTTGTTTCCCAGAATCTGAGCCGTGGTCGCGGTCGGCATGTACGCCACCAAAAGAG 138628 |||| || ||||| || ||||| || |||| || || ||||| || | |||||| | Sbjct 41856 ATTCATTATTTCCAAGTATCTGTGCTGTGGAAGCAGTTGGCATTGGAGCTAACAAAAGGG 41915 Query 138629 AATTCCGTAAACCGTGAAGCTTG-ATTCGTTCCTTGAGCGACGACCAGTCCCACAAATCG 138687 |||| || | ||| || ||| | | ||| || | | | ||| ||||||| ||| Sbjct 41916 AATTACGAAGACCATG--CTTTGCAATTTTTCTTTTAAGGCAGTCCAATCCCACAGATCA 41973 Query 138688 CTAGGTTTTTTGTTCCACATATCGTACTGTAACATTCCCAAACTTGCGGGACTGCCTTCG 138747 |||| | |||| |||||| || || ||||| || || |||||| ||||| || || Sbjct 41974 GTAGGAGTCTTGTCCCACATGTCATATTGTAAAATGCCTTGACTTGCAGGACTTCCATCA 42033 Query 138748 TACGAATCGTATACACCAAACTCTTGCGCCAACTCGTTGCTCGCCTCGAGCGCACCATAG 138807 || | ||| ||||| || | ||||| || || || || | || |||||| Sbjct 42034 TAACTAGAGTAAACACCTTCCTTCTCTGCCAATTCACAACTAGCTTCTAAAGCTCCATAG 42093 Query 138808 TAAATAGTTTCGGCAATCTGCTGATTGAGCAATCGGGCCTCGGCGCTCTCGTACGGCATG 138867 || |||||||| || || ||||| || || || || | ||||| || || | Sbjct 42094 TATATAGTTTCAAATATTTGTTGATTAAGTAAAATTGCTTCTTCACTCTCATAGGGAAAT 42153 Query 138868 CGGAGCATCGTGAACGCGTCGGCCAGCCCTTGCACGCCCACTCCGACAGGGCGATGGCGC 138927 | | | | || || || || | || || || || | || | ||| | ||| | Sbjct 42154 CTCATTAACACAAATGCATCTGCTAATCCCTGAACACCGATGCCAATAGGCCTATGTTTC 42213 Query 138928 AGATTTGACGCTTTTGCGGCTTCGATAGGATAATAGTTTACATCGATGATTTTGTTTAAA 138987 | ||| || ||||| || | ||||| |||| ||||| || || || |||||| Sbjct 42214 ATATTCGAATTCTTTGCTTCTGGCACTGGATAGAAGTTAACATCAATAATCTTATTTAAA 42273 Query 138988 TTTCGCACGACCACCTTAGTCGTATGCTTTAATCGTTCAAAATCGTATGTGCCCCCGTTG 139047 ||| | || ||||| || |||||| || ||||| | || || Sbjct 42274 TTTTGTGTAACAGTTTTAGTAACCTGTTTTAATTTTTGAAAATTAAAAGT------TTTA 42327 Query 139048 TCGTCGACGACGTCGACAAATTTGTTGACACAAATCGAGGCTATGTTGCACACCGCCACT 139107 | || ||||| | || ||| || || |||| |||||||| |||||| Sbjct 42328 T---------TTTCAACAAACATATTAACAGCTATGGACGCTAAATTGCACACTGCCACT 42378 Query 139108 TCGTCGGGGTCGCTGTAT--TCGACAATTTCGGCACACAAATTACTACACTTGATCGTAC 139165 || || || | ||||| || |||||||| | || | || || || || || || | Sbjct 42379 TCATCAGG--TGATGTATACTCAACAATTTCTGTGCAAAGGTTGCTGCATTTTATAGTGC 42436 Query 139166 CTAAATTTTGTTGATTGCTTTTTCGGTTACAAGCATCTTTGTAAAGCATATACGGTGTGC 139225 | | ||||| |||||| ||||||| ||| |||| |||||| || | |||||| ||||| | Sbjct 42437 CAAGATTTTTTTGATTACTTTTTCTGTTGCAAGAATCTTTATACAACATATATGGTGTTC 42496 Query 139226 CAGTTTCCACTTGTGTCTCTATAATGAATTTGAACAAGTCCCTAGCTTGTATTTGACGCA 139285 | ||||| ||||||| ||||| || ||| |||| || || | | ||| | Sbjct 42497 CTGTTTCAACTTGTGCTTCTATTATTGCTTTCCACAAAACCTGTGCACGAACTTGTTTTA 42556 Query 139286 CGTAAAGTTCGTCGCGCTCGTACTTTTCGTAGAGTTCGTCGAATCGTTCACCGTAGGCGT 139345 | || ||| || | || |||||||| || | | || ||| |||||| | | Sbjct 42557 CATAGCGTTTTTCTTGTTCATACTTTTCATATAAAGCTTCAAATTCTTCACCCCAACAAT 42616 Query 139346 CAGAAAGATCGCGACACTTGTCAGGACACATGAGCGACCATACGCCGTTCGCCTTGACGC 139405 ||| | | | || |||| ||||||||| || ||| | || | || | Sbjct 42617 CAGCCAATCCAGGGCAGTTGTGAGGACACATAAGACTCCAATTTTCATTTTTTTCTACCC 42676 Query 139406 GCCTCATGAACAGATCCGGAATCCACAAAGCGAACAGCAAATCGC--GCGCCTTCTTATC 139463 | |||| |||| ||| || ||||| ||||| | | || || | || | | || || Sbjct 42677 GTTTCATAAACAAATCTGGTATCCATAAAGCATAGAATAATTCTCTTGCTCGTACT--TC 42734 Query 139464 TTCCGAACCCATGTTACGTTTCATGTTAAGGAAATCAAAAACGTCAGCGTGCCATGGTTC 139523 ||| ||| | || ||| | | | || ||||| || || |||||||| ||||| Sbjct 42735 TTCTTTACCAGTATTCTTTTTTAAATCTAAAAATTCAAAGACATCTGCGTGCCAAGGTTC 42794 Query 139524 CAGATAGATGGCCATTGCGCCTTTCCGTTTG---CCACCTTGATCGACGTGTCGTACAGC 139580 || ||| | || | ||| || |||||| || |||||||| || | || ||| Sbjct 42795 CAAATACACTGCAAATGCTCCAGGGCGTTTGTTACCCCCTTGATCCACATATCTGGCAGT 42854 Query 139581 ATTATTGAATACGCGCAACATCGGCTCCAGACCGCTCGCTGTTCCGTTGGTGCTACGGAT 139640 ||||| | || | ||||| || | ||||| | | | || || || | | || Sbjct 42855 GTTATTATAGACTCTTAACATAGGAACAAGACCATTGGAAATCCCATTTGTACCAGCAAT 42914 Query 139641 GGGACTGTTGC--GAGCTCGGACGTCATGTACATTGATGCCGATTCCGCCGCCAAATTTG 139698 | ||| | ||||| | | ||| |||| | ||||| || || | | ||| Sbjct 42915 ATAA--GTTCCTTTAGCTCTTATGCAATGCACATGAACACCGATACCTCCAGCTGACTTG 42972 Query 139699 GATATTAAAACGCAATCGCGTAATGTCTCGTATATACCTCTTATGCTGTCGTCCTGCATC 139758 || ||||| | || | || ||| || ||||| ||| || ||||| || | ||| Sbjct 42973 GAAATTAATGCACATTGTTTTAGTGTATCATATATTCCTTCGATACTGTCATCTTTCATA 43032 Query 139759 GTGACCAGAAAGCATGACGAAAGTTGCGGTAGTTTCGTGCCGGCTGCAAACAGAGTAGGA 139818 | || || || || || || | ||| ||| | || | || | ||||| || || Sbjct 43033 GCTACAAGGAAACAAGAAGACAATTGAGGTCTTGGAGTCGCAGCAGAAAACATTGTTGGG 43092 Query 139819 CTCGCGTGCGTGAACATTTGTTTC-GACATCAATTCGTACGTTTCGATGGCGCTCACAAT 139877 || || || || || || | |||| || | ||| | ||| || | || || | || Sbjct 43093 CTTGCATGAGT-AAAATATTTTTCAGATAACAAATTGTAAGTGTTTATAGCTGCATCTAT 43151 Query 139878 ATCCCTTCCGTGGATACCGACAGAGACTCGCATCAGCATATGTTGGATCCGTTCGGCCAC 139937 ||| ||||| || || |||| || |||||||||||||| ||| ||||| || || Sbjct 43152 ATCTTCCCCGTGTATGCCAACAGCAACACGCATCAGCATATGCTGGGGTCGTTCTGCAAC 43211 Query 139938 C 139938 | Sbjct 43212 C 43212 >seq566 Length=99533 Score = 221 bits (244), Expect = 1e-52 Identities = 578/875 (66%), Gaps = 9/875 (1%) Strand=Plus/Minus Query 56299 ACTCCGGTCCAACCTCTGCCGTACATGGCGACACCGAGCACTATCTTGTTCGGCTTTACG 56358 || || ||||| || | |||||||| || || |||| | ||||| ||||| || || Sbjct 71149 ACGCCAGTCCAGCCACGTCCGTACATTGCCACTCCGACGATGATCTTCTTCGGGTTCACA 71090 Query 56359 CCCTGCTGGAGGAGAGCGTGCACAGCGAAATCTGTCGTATATCGTTCTGCCTTGTTCCAT 56418 || || | | | ||| | ||||| || ||||| |||| |||||| Sbjct 71089 CCTTGAGCTAACAAGTATTTTACACCAAAATCGGTAGTATAAGTTTCTTTAGGATTCCAT 71030 Query 56419 TCGGGCGCGTA-AACGTTCGTATGGTAGCCCAAATCCGAGTTGGACCAAGCGCCTTTGAA 56477 || || ||||| || | | || |||| |||| | ||| |||||||| || ||||| Sbjct 71029 TCTGGAGCGTATAAAGGT-GTCTGGTGCCCCAGAGTGTCGTTAGACCAAGCTCCCTTGAA 70971 Query 56478 ATCGTAATTCATCAAAAATATTTTGTCAAGATACGTTTGCGCCTCGTCGTAATCGACGAC 56537 || ||| |||||| || || | ||| | || |||| || | | ||| || || || Sbjct 70970 GTCATAACTCATCAGGAAAATGTGGTCCATGTAGTTTTGGGCTTTGCTGTAGTCAACTAC 70911 Query 56538 GGCTATCTTATCGTATCCCGCGCTTATCGCGCTCGTGAGTTGGAATTTACGACCCGTTTC 56597 || || || | || ||||| || || || | || | |||| | ||| ||| Sbjct 70910 CTGGATTTTGTCCCAACCAGCGCTGATAGCTGATGTCAATTCGTATTTCCTACCAGTTGA 70851 Query 56598 GATCTCCAACTGGTCGAGCATATGTCTCAACTCCTTCAACAGAATCACATAAGTCGACCC 56657 | | | ||| ||||| | | | ||||||| || | || ||| || Sbjct 70850 GTGAGAAAGTTCGTCAAGCATTTCACGGAGTTCCTTCATGAGGTTGACGTAAACATCACC 70791 Query 56658 GTCGTGTGCTGGATCACCTAACAGGGGATTGGCGCCTTTGCCACCCGGAAACTCCCAGTC 56717 ||| | || || | || || || || |||||||| ||||| || |||||||| || Sbjct 70790 GTCTTCTG--GGCTT-CCAAAGGTAGGGTTAGCGCCTTTACCACCAGGGAACTCCCAATC 70734 Query 56718 GATGTCGACTCCATCGAAGAATTTCCACGTTAGTAGAAACTCACGAACGGAATCGATGAA 56777 ||||| || |||||||| |||||||| ||| | || ||||| || || || | ||| Sbjct 70733 AATGTCAACACCATCGAAAAATTTCCAGGTTTGAAGGAACTCTTTGACTGAGTCAACGAA 70674 Query 56778 T--ATTTGACGTTTCGTGTTGTCGTGTAAAAAGTAAAACGGATCCGAGAGTGTCCAACCG 56835 | || | || || ||||| |||||| | |||||||| | | |||||| || Sbjct 70673 GCGAGTTCTC--TTGGTCTTGTCAGTAAAAAAGAAGAACGGATCAGCCAATGTCCATCCT 70616 Query 56836 CCTATCGACGGGAGCACTTTCAGATGCGGGTTCGCCTTTTTGATAGCCATTATCTGCCCG 56895 || || || || || | ||||| | || |||| | ||| | | ||| | || ||| Sbjct 70615 CCAATAGAAGGAAGAATCTTCAGGTCAGGTCTCGCTTGTTTCAATGACATCAGTTGACCG 70556 Query 56896 AAATTGCCCTTGTACGGTTCGTTCCAAGCGGACACTCCTTTTTGTGGTTTCTGTAGTGCG 56955 || ||||| ||||| ||||| ||||||| || | ||||| || |||||||||| || Sbjct 70555 AAGTTGCCTTTGTATGGTTCATTCCAAGATGATAGACCTTTCTGAGGTTTCTGTAAGGCT 70496 Query 56956 GCCCACGGATCGTGTATGGACACCTTGAAATCAGCACGATTCGAACACGAGCGTTGCAAC 57015 ||||| |||||||| || || || || || || | ||| || || ||||| | Sbjct 70495 GCCCAGGGATCGTGAATAGATACTTTAAAGTCCTCGCGACCACTGCAAGAACGTTGAAGT 70436 Query 57016 GCTTCGAAACTACCCGTGATCGTTTTGAGACTATCGTTGATGCCGTCGCCGCCACAGATC 57075 |||| |||||| || ||| || | ||| ||||| ||||| || || ||||| || Sbjct 70435 GCTTGGAAACTTCCTTCGATTTCCTTTAAACTGTCGTTAATGCCATCTCCACCACAAATT 70376 Query 57076 GGTATGAAACCGTATAAGAGATGCGACAGATTGGGCACTGGCACCTTGTCGGCTGCAAAA 57135 || || ||||| || | || || | |||||||| | ||| || ||| | | || Sbjct 70375 GGAATAAAACCATACAGAAGGTGAGTTAGATTGGGAATTGGTACGCGATCGACGGGGAAC 70316 Query 57136 TTCCTACCGTATACGCCCCATTCGACGAAATATGC 57170 ||||| ||| ||||||||||| || ||||| || Sbjct 70315 TTCCTCGGGTAAACGCCCCATTCCACAAAATAAGC 70281 >seq5066 Length=19128 Score = 159 bits (176), Expect = 3e-34 Identities = 164/211 (78%), Gaps = 4/211 (2%) Strand=Plus/Plus Query 24704 ATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCACC 24763 |||||||| || ||||||| || || ||||||||||| ||||||||||| ||| | | Sbjct 18851 ATGCAGATTTTCGTTAAAACTCTTACAGGTAAAACTATAACGCTCGAAGTTGAACCTTCG 18910 Query 24764 GACACAGTAGAAACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCAA 24823 || || | || | || ||| |||||| |||||||||||||| || || || |||||| Sbjct 18911 GATACTATCGAGAATGTCAAAGCAAAGATTCAAGACAAAGAAGGCATTCCCCCAGATCAA 18970 Query 24824 CAACGTTTGATCTTTGCCGGGAAACAGCTGGAGGA--TTCGAGAAACATGTCAGATTATA 24881 || |||||||||||||| || || || || || || ||| | || | ||||| |||| Sbjct 18971 CAGCGTTTGATCTTTGCTGGCAAGCAACTTGAAGACGGTCG-TACAC-TATCAGACTATA 19028 Query 24882 ACATTCAAAAGGAATCGACACTACACTTGGT 24912 | ||||||||||| || ||||| |||||||| Sbjct 19029 ATATTCAAAAGGAGTCTACACTTCACTTGGT 19059 Score = 145 bits (160), Expect = 7e-30 Identities = 158/210 (75%), Gaps = 0/210 (0%) Strand=Plus/Plus Query 24703 GATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCAC 24762 ||||||||| || | || || || || ||||| |||||||| | ||||| ||| | | Sbjct 18622 GATGCAGATTTTCGTGAAGACTCTCACGGGTAAGACTATTACTTTAGAAGTTGAACCATC 18681 Query 24763 CGACACAGTAGAAACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCA 24822 ||| || | |||| || ||| ||||| |||||||||||||| || || || ||||| Sbjct 18682 CGATACCATCGAAAACGTTAAAGCGAAGATTCAAGACAAAGAAGGCATTCCCCCAGATCA 18741 Query 24823 ACAACGTTTGATCTTTGCCGGGAAACAGCTGGAGGATTCGAGAAACATGTCAGATTATAA 24882 ||||||||||| ||||| || || ||||| || ||| ||| | | || |||||||| Sbjct 18742 GCAACGTTTGATTTTTGCTGGAAAGCAGCTTGAAGATGGTCGAACCTTATCCGATTATAA 18801 Query 24883 CATTCAAAAGGAATCGACACTACACTTGGT 24912 ||||||||| ||||| || |||| |||| Sbjct 18802 CATTCAAAAAGAATCTACCTTACATCTGGT 18831 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 449851142449080