Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Melitaea_20cinxia_20[genbank_20GCA_5F000716385.1_202014-07-09] 8,261 sequences; 389,907,520 total letters Query= NC_021924.1 Length=129052 Score E Sequences producing significant alignments: (Bits) Value seq566 197 1e-45 seq353 170 2e-37 seq2668 145 6e-30 seq5066 104 2e-17 >seq566 Length=99533 Score = 197 bits (218), Expect = 1e-45 Identities = 631/968 (65%), Gaps = 27/968 (3%) Strand=Plus/Plus Query 28809 GCGTATTTTGTGGAATGGAGCGTGTACGGCCGCAACTTTTCGGTGGACAAGGTGCCGCTG 28868 || ||||||||||||||| |||| ||| | || || | || || || || | Sbjct 70281 GCTTATTTTGTGGAATGGGGCGTTTACCCGAGGAAGTTCCCCGTCGATCGCGTACCAATT 70340 Query 28869 CCCAACCTCTCGCATCTGTTATACGGCTTCGTACCTATTTGCGGCGGCGACGGGCTCAAC 28928 ||||| || | || || | || || || | || ||||| || || || || | ||| Sbjct 70341 CCCAATCTAACTCACCTTCTGTATGGTTTTATTCCAATTTGTGGTGGAGATGGCATTAAC 70400 Query 28929 GACGCCCTTAAAACCATACCC--GGTAGTTTTGAAGCGCTGCAACGTTCGTGCAACGGCC 28986 ||| || ||| | | | || ||||| |||| || |||||||| |||| || | Sbjct 70401 GACAG--TTTAAAGGAAATCGAAGGAAGTTTCCAAGCACTTCAACGTTCTTGCAGTGGTC 70458 Query 28987 GTTCAGATTTTAAAGTTGCTATTCACGATCCTTGGGCCGCAATACAAAAACCGCAAAAGG 29046 | || |||||||| ||||||||||||| ||||| || |||| ||||| || || | Sbjct 70459 GCGAGGACTTTAAAGTATCTATTCACGATCCCTGGGCAGCCTTACAGAAACCTCAGAAAG 70518 Query 29047 GCGTGTCTGCGTGGAACGAGCCCTACAAAGGCAATTTCGGTCAGCTCATGGCTGCCAAGT 29106 | | || | ||||| || || ||||||||||| |||||||| || ||| | || Sbjct 70519 GTCTATCATCTTGGAATGAACCATACAAAGGCAACTTCGGTCAACTGATGTCATTGAAAC 70578 Query 29107 TGGCCAATCCACACATCAAAATTCTACCGTCCATAGGCGGCTGGACATTGTCCGA-CCCT 29165 || | || || | || ||||| || || || || || ||||||||| | || || | Sbjct 70579 AAGCGAGACCTGACCTGAAGATTCTTCCTTCTATTGGAGGATGGACATTGGCTGATCCGT 70638 Query 29166 TTTTATTTTATGC--ACGACGCGGAGAAACGGCGCGTGTTTGTGGACTCGGTCGAGGAAT 29223 | || |||| | | || | | ||| | ||| || || ||||| ||| | || | Sbjct 70639 TCTTCTTTTTTACTGACAAGACCAAGAGAACTCGC---TTCGTTGACTCAGTCAAAGAGT 70695 Query 29224 TTTTGCAGGTGTGGAAATTTTTTGACGGCGTAGACATTGACTGGGAATTTCCGGGCGGTA 29283 | | || ||||||||||| || || || |||||||| ||||| || || || |||| Sbjct 70696 TCCTTCAAACCTGGAAATTTTTCGATGGTGTTGACATTGATTGGGAGTTCCCTGGTGGTA 70755 Query 29284 AAGGCGCTAACCCGACACTTGGCAACGGGGAGCGCGACGCCGACACGTATAACATTTTAC 29343 ||||||||||||| || |||| | | || |||| || || || | Sbjct 70756 AAGGCGCTAACCCTACCTTTGGAAGCCCAGA---AGACGGTGATGTTTACGTCAACCTCA 70812 Query 29344 TGAAGGAATTGCGCGCAATGCTGGATAAACT---GCAATTGCAAACGGGTAAAACGTATG 29400 |||||||| | || | |||||| || |||| || | ||| |||| | || | Sbjct 70813 TGAAGGAACTCCGTGAAATGCTTGACGAACTTTCTCACT---CAACTGGTAGGAAATACG 70869 Query 29401 AATTGACAAGCGCAATCAGCTCTGGCCACGACAAAATTGCTGTAGTGAAATACGACGTTG 29460 |||||||| || |||||| |||| |||||||| ||||| | ||| | | Sbjct 70870 AATTGACATCAGCTATCAGCGCTGGTTGGGACAAAATCCAGGTAGTTGACTACAGCAAAG 70929 Query 29461 TGCAAAAATTTCTTGATAAAATATTTCTAATGAGTTACGATTTTAAAGGCGCATGGTCAA 29520 ||||| | | || | || || || |||||||| || || || || || ||||| | Sbjct 70930 CCCAAAACTACATGGACCACATTTTCCTGATGAGTTATGACTTCAAGGGAGCTTGGTCTA 70989 Query 29521 ACACCGATTTGGGATATCAAACTACACTCTACGCACCGAGTTGGAATCCCAACGAGCTTT 29580 || | | |||| | || || | | ||||| || |||||||| || || || Sbjct 70990 ACGACACTCTGGGGCACCAGACACCTTTATACGCTCCAGAATGGAATCCTAAAGAAACTT 71049 Query 29581 ACAACACTGACCACGCCGTAAAGTCGCTCACTAAC-CAAGGCGTGGACCCGCGCAAAATT 29639 | | || || | ||||| | || || | ||||| ||| ||||| || || Sbjct 71050 ATACTACCGATTTTGGTGTAAAAT-ACTTGTTAGCTCAAGGTGTGAACCCGAAGAAGATC 71108 Query 29640 ATTGTGGGCGTCGCCATGTACGGCCGCGGTTGGACGGGCGTGACCGGTTACGTCGGTGAC 29699 || || || || || |||||||| || || ||||| ||||| ||| || || ||| Sbjct 71109 ATCGTCGGAGTGGCAATGTACGGACGTGGCTGGACTGGCGTCCACGGGTA---CGAGGAC 71165 Query 29700 AACTAT---TTTAAAGGCACAGCTGCCGGGCCCGTGACCGGCACTTGGGATGACGGAGTT 29756 ||| || || | |||| || | || || || | || || ||| | ||||| || Sbjct 71166 AACAATCCCTTCACTGGCAACGCAACAGGACCAGTCAAGGGAACCTGGCAAGACGGTGTA 71225 Query 29757 GTCGACTA 29764 ||||| || Sbjct 71226 GTCGATTA 71233 >seq353 Length=141869 Score = 170 bits (188), Expect = 2e-37 Identities = 129/152 (85%), Gaps = 0/152 (0%) Strand=Plus/Minus Query 34492 GCCGGACGTCCAAGCGCCTTGGCGATTTCGGGCATGTTGACGATGACAGTCTTGATGCCG 34551 || || || || ||||| || || | |||||||||||| || ||||| |||||||||||| Sbjct 140215 GCGGGGCGACCCAGCGCTTTTGCCACTTCGGGCATGTTCACAATGACCGTCTTGATGCCG 140156 Query 34552 TTGCCCTTTCCTTCGACCTTGGCGCAGATGCGCGGCATTTTGTAGCGGTAGAACGCGTCC 34611 || ||||| || || ||||||||||| ||||| ||||| ||||| ||||||||||||||| Sbjct 140155 TTCCCCTTGCCCTCCACCTTGGCGCAAATGCGAGGCATCTTGTAACGGTAGAACGCGTCC 140096 Query 34612 GCCACATTGCGGTTAACGTTCACAGTCCCCAT 34643 |||||||| ||||| |||||||| | |||||| Sbjct 140095 GCCACATTCCGGTTGACGTTCACGGACCCCAT 140064 Score = 95.1 bits (104), Expect = 1e-14 Identities = 84/105 (80%), Gaps = 0/105 (0%) Strand=Plus/Minus Query 34369 CCATCAAGCAGGTCCTGTAACTTAACGGAGTCGTGGGAGCCGTTGACGATGAATCGTTCG 34428 || || |||| |||||| | || | ||||||||| ||||||||||||||| ||||| Sbjct 141399 CCGTCCAGCAAGTCCTGCAGTTTGGCAGAGTCGTGGCTGCCGTTGACGATGAAACGTTCA 141340 Query 34429 TTTTTGTAATCGACCTGCGTTTGCGCGCCCAGCTCGCACCCGAAG 34473 || |||||||||| |||||| || || ||||| || || |||||| Sbjct 141339 TTCTTGTAATCGAACTGCGTCTGAGCACCCAGTTCACAGCCGAAG 141295 >seq2668 Length=134947 Score = 145 bits (160), Expect = 6e-30 Identities = 190/263 (72%), Gaps = 0/263 (0%) Strand=Plus/Minus Query 103646 CCCGTACACCCCGAGTATGCAATAGAAGCTGCGCGTTTGCGCACTTTTACCGCGTGGCCG 103705 || |||||||| |||||| ||| || || || || ||||| |||| | ||||| Sbjct 31179 CCAGTACACCCTCGGTATGCTTCAGAGGCCGCTCGATTACGCACCTTTAAGGATTGGCCC 31120 Query 103706 CGCGGTTTGAAGCAACATCCCGAGATACTTGCCGAAGCTGGTTTCTTTTACACCGGCAAA 103765 ||| || |||| ||| | |||||| ||||||||||||||| || || || ||||| || Sbjct 31119 CGCAGTATGAAACAAAAACCCGAGGAACTTGCCGAAGCTGGCTTTTTCTATACCGGTAAC 31060 Query 103766 AGCGACAAAGTCAAATGCTTTTACTGCAACGGCGGTCTGAACAATTGGGAGCAAGATGAC 103825 | || || |||||||| || |||| ||||| | |||||||| | || || Sbjct 31059 GGAGATAAGACGTTGTGCTTTTATTGTGACGGGGGTCTTAGGGATTGGGAGAACGACGAT 31000 Query 103826 GACCCGTGGCAACAACACGCGCTTTGGTTCGGACGCTGCGCATACGTGCTACTTGTCAAA 103885 | |||||| | ||||| || | |||||||| |||||||| || || | ||| || ||| Sbjct 30999 GTACCGTGGGAGCAACATGCTCGTTGGTTCGATCGCTGCGCCTATGTACAACTCGTAAAA 30940 Query 103886 GGCCACGATTATGTACAAAAGGT 103908 || | ||||| |||||||| || Sbjct 30939 GGGCGGGATTACGTACAAAAAGT 30917 >seq5066 Length=19128 Score = 104 bits (114), Expect = 2e-17 Identities = 160/227 (70%), Gaps = 1/227 (0%) Strand=Plus/Plus Query 110256 TTTATAAGAGATTTAAA-ATGCAAATATTTGTCAAAACTTTAACCGGCAAAACCATTACC 110314 ||||| | || ||| || ||||| || || || || ||| | || || || || ||||| Sbjct 18605 TTTATTACAGTTTTCAAGATGCAGATTTTCGTGAAGACTCTCACGGGTAAGACTATTACT 18664 Query 110315 GTCGAAACGGAGCCTGACGATACTGTCGGCCAGGTAAAACAGAAGATTGCCGACAAAGAA 110374 | ||| || || |||||| ||| | || ||| ||||||| ||||||||| Sbjct 18665 TTAGAAGTTGAACCATCCGATACCATCGAAAACGTTAAAGCGAAGATTCAAGACAAAGAA 18724 Query 110375 GGCGTGCCCGTGGATCAACAAAGACTTATTTATGCGGGTAAACAGCTGGAGGATGCCAGA 110434 ||| | ||| ||||| ||| | | |||| ||| || || ||||| || |||| || Sbjct 18725 GGCATTCCCCCAGATCAGCAACGTTTGATTTTTGCTGGAAAGCAGCTTGAAGATGGTCGA 18784 Query 110435 ACAATGGCGGATTACAACATTCAAAAAGAATCTACGTTGCACATGGT 110481 || | | ||||| |||||||||||||||||||| || || |||| Sbjct 18785 ACCTTATCCGATTATAACATTCAAAAAGAATCTACCTTACATCTGGT 18831 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 412800034720673