Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Melitaea_20cinxia_20[genbank_20GCA_5F000716385.1_202014-07-09] 8,261 sequences; 389,907,520 total letters Query= NC_022646.1 Length=101818 Score E Sequences producing significant alignments: (Bits) Value seq566 172 4e-38 seq5066 86.0 4e-12 >seq566 Length=99533 Score = 172 bits (190), Expect = 4e-38 Identities = 644/996 (65%), Gaps = 39/996 (4%) Strand=Plus/Minus Query 5551 GCTATGTTTCTGTAATCCACCACACCGTCTTCCCAAGTGCCTGCAATCTTGTCG-GTCGC 5609 ||||| | ||||||||| || |||||||||| ||| || || | || ||| || || Sbjct 71245 GCTATTTCTCTGTAATCGACTACACCGTCTTGCCAGGTTCCCTTGA-CTGGTCCTGTTGC 71187 Query 5610 CACACCGGTGAATACATTGTTGTTCACCTGGTCGTGCACTCCGGACCACCCACGACCGTA 5669 || ||||| |||||||| | | | |||| || || | ||| ||||| ||||| Sbjct 71186 GTTGCCAGTGAAGGGATTGTTGTCCTCGTACCCGTGGACGCCAGTCCAGCCACGTCCGTA 71127 Query 5670 CATGGCTACTCCCACAATTAGCTTCCTCGACTCGACGCTCTGATTTAGCAGACGCCTGAC 5729 ||| || ||||| || || | |||| ||| | || | ||| || || | || Sbjct 71126 CATTGCCACTCCGACGATGATCTTCTTCGGGTTCACACCTTGAGCTAACAAGTATTTTAC 71067 Query 5730 GGAAAAATCGGTCGTGTACGTTTCGCCTGGGTTCCACGATGGAGCGAACAGAGGTGTCTG 5789 ||||||||| || || ||||| || ||||| ||||||| | | ||||||||| Sbjct 71066 ACCAAAATCGGTAGTATAAGTTTCTTTAGGATTCCATTCTGGAGCGTATAAAGGTGTCTG 71007 Query 5790 GTGTCCCAGA--TCCGTCAACGACCAGGCACCCTTGTAATCGTACGTCATGACAAATATG 5847 ||| |||||| ||| | ||||| || |||||| | || || |||| | || ||| Sbjct 71006 GTGCCCCAGAGTGTCGTTA--GACCAAGCTCCCTTGAAGTCATAACTCATCAGGAAAATG 70949 Query 5848 TGATCAAGGTATTTTTGTGCGGTGGCGTAGTCGACGACGTCGATCTTGTCGTGTCCCGCG 5907 || || | ||| ||||| || || |||||| || || | ||| ||||| || ||| Sbjct 70948 TGGTCCATGTAGTTTTGGGCTTTGCTGTAGTCAACTACCTGGATTTTGTCCCAACCAGCG 70889 Query 5908 CCGACGGCGCTCGTCAACT-GTAGCCGTCTACCCCGCTTCTCGCCCAA-CTCATCAAGCA 5965 | || || ||||| | ||| || || | | | || || ||||||| Sbjct 70888 CTGATAGCTGATGTCAATTCGTA--TTTCCTACCAGTTGAGTGAGAAAGTTCGTCAAGCA 70831 Query 5966 TCACGCGAAGTTCCCGCAGCAAAAGAGTGTAGGTGTTGCGATCCACC----TCGGCATTA 6021 | | || |||||| | | ||| || | || || |||| || | | Sbjct 70830 TTTCACGGAGTTCCTTC-----ATGAG-GTTGACGTAAACAT-CACCGTCTTCTGGGCTT 70778 Query 6022 CCCAACACAGAATTGGCACCCTTTCCACCCGGAAACTCCCAGTCGATGTCCACTCCGTCA 6081 || || || || || || || ||||| || |||||||| || ||||| || || || Sbjct 70777 CCAAAGGTAGGGTTAGCGCCTTTACCACCAGGGAACTCCCAATCAATGTCAACACCATCG 70718 Query 6082 AAGAACTTCCAGGTCTCCAGAAACTCGCGGACGCTTGTG---ACGAACACCTCACGCTTA 6138 || || |||||||| | || ||||| ||| || | ||||| | ||| Sbjct 70717 AAAAATTTCCAGGTTTGAAGGAACTCTTTGAC---TGAGTCAACGAAGCGAGTTCTCTTG 70661 Query 6139 GAGTCATCGTTCATGAAATAAAACGGATCGCTCAACGTCCACCCCCCTATGGATGGTAGG 6198 | | || | | || | |||||||| ||| ||||| || || || || || || Sbjct 70660 GTCTTGTCAGTAAAAAAGAAGAACGGATCAGCCAATGTCCATCCTCCAATAGAAGGAAGA 70601 Query 6199 ACCGTCAACGAGGGGTTGTGACGTTTGATGGCCATCAGCTGGCCAAAGTTACCCTTGTAC 6258 | | ||| || | |||| | | |||||| || || ||||| || ||||| Sbjct 70600 ATCTTCAGGTCAGGTCTCGCTTGTTTCAATGACATCAGTTGACCGAAGTTGCCTTTGTAT 70541 Query 6259 TCTTCGTTGTACGCCTCAACACCTTTCTGTGGTTTTTGCAACGCGGCCCAGATGTCGTGA 6318 ||| || | | | ||||||||| ||||| || || || |||||| |||||| Sbjct 70540 GGTTCATTCCAAGATGATAGACCTTTCTGAGGTTTCTGTAAGGCTGCCCAGGGATCGTGA 70481 Query 6319 ATACTTACCTTGAAGTCATCGCGACCAGCGCAGGATTTCTGTAGCGCCTCAAAGGAA--- 6375 ||| ||| || ||||| ||||||||| ||| || || || || | |||| Sbjct 70480 ATAGATACTTTAAAGTCCTCGCGACCACTGCAAGAACGTTGAAGTGCTT----GGAAACT 70425 Query 6376 ---TTGGGAATCTGCTTGAGGGCGTCGTTTATGCCGCTACCACCACAAATTGGAATGAAC 6432 || | || | ||| | |||||| ||||| ||||||||||||||||| || Sbjct 70424 TCCTTCG--ATTTCCTTTAAACTGTCGTTAATGCCATCTCCACCACAAATTGGAATAAAA 70367 Query 6433 CCGTACAGCAGGTGCGTCAGATTAGGTATTGGTACCTTGTCAATGGGAAACTGTCTGCCA 6492 || ||||| ||||| || ||||| || |||||||| || | ||| |||| || Sbjct 70366 CCATACAGAAGGTGAGTTAGATTGGGAATTGGTACGCGATCGACGGGGAACTTCCTCGGG 70307 Query 6493 TACACTCCCCACTCCACGAAATACGCACCGACGACT 6528 || || ||||| ||||| ||||| || || || ||| Sbjct 70306 TAAACGCCCCATTCCACAAAATAAGCGCCAACTACT 70271 >seq5066 Length=19128 Score = 86.0 bits (94), Expect = 4e-12 Identities = 146/212 (69%), Gaps = 0/212 (0%) Strand=Plus/Minus Query 34766 AGGACCAGGTGAATGGTGCTCTCCTTCTGAATGTTATAGTCCGATAGGCTGCGCTCATCG 34825 || ||||| || | ||| || || ||||||||||| || |||| | | || |||| Sbjct 18834 AGAACCAGATGTAAGGTAGATTCTTTTTGAATGTTATAATCGGATAAGGTTCGACCATCT 18775 Query 34826 TCCAGTTGCTTTCCGGCGAAGATCAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCG 34885 || || |||||||| || || |||| |||||||| ||| | || | || || ||||| Sbjct 18774 TCAAGCTGCTTTCCAGCAAAAATCAAACGTTGCTGATCTGGGGGAATGCCTTCTTTGTCT 18715 Query 34886 TTTATTTTTTGTTTGACGGATGCTATCGATTCATTGGCCTCGACATCAACGGTTATGGTC 34945 | || || ||| ||| | | || | || | || || || | || || ||| Sbjct 18714 TGAATCTTCGCTTTAACGTTTTCGATGGTATCGGATGGTTCAACTTCTAAAGTAATAGTC 18655 Query 34946 TTTCCCGTGAGGGTCTTTACAAAGATCTGCAT 34977 || |||||||| ||||| || || |||||||| Sbjct 18654 TTACCCGTGAGAGTCTTCACGAAAATCTGCAT 18623 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 325660008943559