Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Melitaea_20cinxia_20[genbank_20GCA_5F000716385.1_202014-07-09] 8,261 sequences; 389,907,520 total letters Query= NC_023177.1 Length=124688 Score E Sequences producing significant alignments: (Bits) Value seq2668 226 2e-54 seq566 197 1e-45 seq5066 95.1 1e-14 >seq2668 Length=134947 Score = 226 bits (250), Expect = 2e-54 Identities = 360/511 (70%), Gaps = 13/511 (3%) Strand=Plus/Minus Query 103568 AACGGGTTCTTCTACTTGGGCCGCGGCGACGAAGTGCGCTGCGCGTTTTGCAAAGTGGAG 103627 ||||| || | || | || || || ||||| ||| | |||||||| || || ||||| Sbjct 31422 AACGGATTTTATTATCTCGGACGAGGAGACGAGGTGAGATGCGCGTTCTGTAAGGTGGAA 31363 Query 103628 ATTATGCGCTGGGAGGAGGGCGACGACCCGGCTCGCGATCATCAGAGGTGGGCGCCGCAG 103687 || ||| |||| ||| || ||||| || || || |||||| | |||||||||||| Sbjct 31362 ATCATGAAGTGGGTGGAAGGTGACGATCCTGCGAAAGACCATCAGCGATGGGCGCCGCAG 31303 Query 103688 TGTCCGTTCCTGaaaa---aaaCGGCTGCTGGCGCG-CTGCCCGCCGGCCTTGC-GAT-- 103740 ||||| ||||||| || ||| ||| | || | || | | || | || Sbjct 31302 TGTCCTTTCCTGAGGCGCCAATCGG--GCTCGGGCAACATTCCTCTTGGCTCCCAGACAG 31245 Query 103741 -GGACGGGCAGGACGAGTGCGGCGTGAGCGCGCTGCCGTCCACCAACGCCTGCGTGCGCA 103799 || ||| | |||||||| ||||| | |||| || || ||||| | | |||| Sbjct 31244 CGGTCGGCCGCGACGAGTGTGGCGTCCGAGCGCCCCCCGCCCCCAACTCTATC---CGCA 31188 Query 103800 TGCCCGGCCCCGCGCACCCTCGGTTCGCCTCCGAGGCCTCAAGGTTACAAACTTTTAAGG 103859 |||||||||| | |||||||||| || || |||||| | | |||| || ||||||| Sbjct 31187 TGCCCGGCCCAGTACACCCTCGGTATGCTTCAGAGGCCGCTCGATTACGCACCTTTAAGG 31128 Query 103860 ATTGGCCCCGGAGTCTGAAACAGAAACCGGAGAAGATGGCCGAAGCCGGATTCTACTACA 103919 |||||||||| ||| ||||||| ||||| ||| | | |||||||| || || | ||| | Sbjct 31127 ATTGGCCCCGCAGTATGAAACAAAAACCCGAGGAACTTGCCGAAGCTGGCTTTTTCTATA 31068 Query 103920 CCGGCCACAGCGACAACACGAAATGCTTCTACTGCGACGGTGGTCTAAAGGATTGGGAGC 103979 |||| || | || || ||| ||||| || || ||||| ||||| | |||||||||| Sbjct 31067 CCGGTAACGGAGATAAGACGTTGTGCTTTTATTGTGACGGGGGTCTTAGGGATTGGGAGA 31008 Query 103980 ACGATGATGAGCCGTGGCAACAACACGCGCTTTTCTTTCGCCGTTGCGCATACGTGCTAC 104039 |||| |||| |||||| | ||||| || | || || || ||||| || || | || Sbjct 31007 ACGACGATGTACCGTGGGAGCAACATGCTCGTTGGTTCGATCGCTGCGCCTATGTACAAC 30948 Query 104040 TTGTCAAGGGCCACGATTATGTACAAAAGGT 104070 | || || || | ||||| |||||||| || Sbjct 30947 TCGTAAAAGGGCGGGATTACGTACAAAAAGT 30917 >seq566 Length=99533 Score = 197 bits (218), Expect = 1e-45 Identities = 643/990 (65%), Gaps = 29/990 (3%) Strand=Plus/Plus Query 29073 GCGTATTTTGTAGAATGGGGCGTATATGGCCGCAACTTTCCGGTAGACAAAGTGCCGCTG 29132 || |||||||| ||||||||||| || | || || || || || || || | Sbjct 70281 GCTTATTTTGTGGAATGGGGCGTTTACCCGAGGAAGTTCCCCGTCGATCGCGTACCAATT 70340 Query 29133 CCCAACCTCTCGCATCTGTTGTACGGTTTCATACCTATTTGCGGCGGCGACGGGCTCAAC 29192 ||||| || | || || |||| ||||| || || ||||| || || || || | ||| Sbjct 70341 CCCAATCTAACTCACCTTCTGTATGGTTTTATTCCAATTTGTGGTGGAGATGGCATTAAC 70400 Query 29193 GACGCCCTCAAAACCATTCCCGGCAGTTTTGAGGCGCTGCAACGCTCTTGCAAGGGCCGT 29252 ||| | || || || ||||| | || || ||||| ||||||| || || Sbjct 70401 GACAGTTTAAAGGAAATCGAAGGAAGTTTCCAAGCACTTCAACGTTCTTGCAGTGGTCGC 70460 Query 29253 TCAGATTTCAAAGTCGCTATTCACGATCCGTGGGCCGCGATACAAAAACCGCAAAAGGGC 29312 || || ||||| ||||||||||||| ||||| || |||| ||||| || || || Sbjct 70461 GAGGACTTTAAAGTATCTATTCACGATCCCTGGGCAGCCTTACAGAAACCTCAGAAAGGT 70520 Query 29313 GTGTCTGCGTGGAACGAGCCCTACAAAGGAAACTTCGGTCAGCTAATGGCGGCCAAGCTG 29372 | || | ||||| || || |||||||| ||||||||||| || ||| | || | Sbjct 70521 CTATCATCTTGGAATGAACCATACAAAGGCAACTTCGGTCAACTGATGTCATTGAAACAA 70580 Query 29373 GCCAATCCGCACCTCAAAATTCTGCCGTCCATCGGCGGCTGGACATTGTCCGACCCGTTC 29432 || | || |||| || ||||| || || || || || ||||||||| | || |||||| Sbjct 70581 GCGAGACCTGACCTGAAGATTCTTCCTTCTATTGGAGGATGGACATTGGCTGATCCGTTC 70640 Query 29433 ----TATTTCATG-CACGACGCGGAAAAACGGCGTGTGTTTGTGGACTCGGTCAGAGAAT 29487 | ||| || || ||| || || || || || ||||| |||| ||| | Sbjct 70641 TTCTTTTTTACTGACAAGACCAAGAGAACTCGC-----TTCGTTGACTCAGTCAAAGAGT 70695 Query 29488 TTCTGCAGGTGTGGAAGTTTTTTGACGGCGTGGACATAGACTGGGAGTTTCCGGGTGGCA 29547 | || || ||||| ||||| || || || ||||| || |||||||| || ||||| | Sbjct 70696 TCCTTCAAACCTGGAAATTTTTCGATGGTGTTGACATTGATTGGGAGTTCCCTGGTGGTA 70755 Query 29548 AAGGCGCCAACCCGACACTTGGCAACGGGGAGCGCGACGCCGACACGTATAACATTTTAC 29607 ||||||| ||||| || |||| | | || |||| || || || | Sbjct 70756 AAGGCGCTAACCCTACCTTTGGAAGCCCAGA---AGACGGTGATGTTTACGTCAACCTCA 70812 Query 29608 TAAAGGAATTGCGCGCAATGATGGACGAGTTACAATTGCA---AACGGGCAAAACGTACG 29664 | |||||| | || | |||| | ||||| || | || ||| || | | |||| Sbjct 70813 TGAAGGAACTCCGTGAAATGCTTGACGA---ACTTTCTCACTCAACTGGTAGGAAATACG 70869 Query 29665 AGTTGACAAGCGCAATCAGTTCCGGACATGACAAGATTGCTGTAGTTAAATACGACGCTG 29724 | |||||| || ||||| | || ||||| || |||||| | ||| | | Sbjct 70870 AATTGACATCAGCTATCAGCGCTGGTTGGGACAAAATCCAGGTAGTTGACTACAGCAAAG 70929 Query 29725 CGCAAAAGTTTCTCGATAAAATATTCCTCATGAGCTACGATTTTAAAGGCGCGTGGTCAA 29784 | ||||| | | || | || ||||| ||||| || || || || || || ||||| | Sbjct 70930 CCCAAAACTACATGGACCACATTTTCCTGATGAGTTATGACTTCAAGGGAGCTTGGTCTA 70989 Query 29785 ACACCGATTTGGGCTACCAAACTACTCTCTACGCGCCGAGTTGGAACCCAAACGAACTGT 29844 || | | |||| |||| || || | ||||| || ||||| || || ||| | Sbjct 70990 ACGACACTCTGGGGCACCAGACACCTTTATACGCTCCAGAATGGAATCCTAAAGAAACTT 71049 Query 29845 ACAACACGGACCACGCCGTTAAGTTGCTCACGAAC-CAGGGCGTGGACCCGCGCAAAATT 29903 | | || || | | ||| | || | | || || ||| ||||| || || Sbjct 71050 ATACTACCGATTTTGGTG-TAAAATACTTGTTAGCTCAAGGTGTGAACCCGAAGAAGATC 71108 Query 29904 ATTGTGGGCGTCGCCATGTACGGCCGCGGTTGGACAGGCGT-GTCGGGTTATGACGGTGA 29962 || || || || || |||||||| || || ||||| ||||| ||||| ||| || Sbjct 71109 ATCGTCGGAGTGGCAATGTACGGACGTGGCTGGACTGGCGTCCACGGGT----ACGAGGA 71164 Query 29963 CAACTAT---TTTACGGGCACAGCTGCTGGGCCCGTGACCGGCACTTGGGAAGACGGCGT 30019 |||| || || || |||| || | || || || | || || ||| ||||||| || Sbjct 71165 CAACAATCCCTTCACTGGCAACGCAACAGGACCAGTCAAGGGAACCTGGCAAGACGGTGT 71224 Query 30020 TGTCGACTATCGCCAAATTGAAAACGAAAT 30049 ||||| || | |||| | |||||||| Sbjct 71225 AGTCGATTACAGAGAAATAGCGAACGAAAT 71254 >seq5066 Length=19128 Score = 95.1 bits (104), Expect = 1e-14 Identities = 147/210 (70%), Gaps = 0/210 (0%) Strand=Plus/Plus Query 107555 AATGCAAATTTTTGTCAAAACTTTAACAGGCAAAACCATTACCGTCGAAACGGAGGCTGG 107614 |||||| ||||| || |||||| | ||||| ||||| || || ||||| || || Sbjct 18850 AATGCAGATTTTCGTTAAAACTCTTACAGGTAAAACTATAACGCTCGAAGTTGAACCTTC 18909 Query 107615 CGATACTGTCGGCCAGGTAAAACAAAAGATTGCCGATAAAGAAGGCGTGCCCGTGGATCA 107674 |||||| ||| | || ||| ||||||| || ||||||||| | ||| ||||| Sbjct 18910 GGATACTATCGAGAATGTCAAAGCAAAGATTCAAGACAAAGAAGGCATTCCCCCAGATCA 18969 Query 107675 GCAGAGACTTATTTATGCGGGTAAACAGCTGGAGGACGCCAAAACAATGGCGGACTACAA 107734 ||| | | || | ||| || || || || || |||| ||| | | ||||| || Sbjct 18970 ACAGCGTTTGATCTTTGCTGGCAAGCAACTTGAAGACGGTCGTACACTATCAGACTATAA 19029 Query 107735 CATTCAAAAGGAGTCTACGTTGCACATGGT 107764 ||||||||||||||||| | ||| |||| Sbjct 19030 TATTCAAAAGGAGTCTACACTTCACTTGGT 19059 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 398836640709829