Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Melitaea_20cinxia_20[genbank_20GCA_5F000716385.1_202014-07-09] 8,261 sequences; 389,907,520 total letters Query= NC_023442.1 Length=120420 Score E Sequences producing significant alignments: (Bits) Value seq566 219 3e-52 seq2668 179 3e-40 seq5066 156 3e-33 seq1291 82.4 6e-11 >seq566 Length=99533 Score = 219 bits (242), Expect = 3e-52 Identities = 665/1020 (65%), Gaps = 18/1020 (2%) Strand=Plus/Plus Query 45063 AGAAAACAACAAGCCCTATGAAATAGGTACCACTGACAAAACTGTCGCCGCTTATTTCGT 45122 ||| || |||||||||| | || || || ||| ||| || | ||||||||| || Sbjct 70235 AGAGAAGAACAAGCCCTTT-AAGCAG--ACTTCTGGAAAAGTAGTTGGCGCTTATTTTGT 70291 Query 45123 TGAATGGGGAGTGTATGGGCGCAATTTTCCTATGAACCGCGTGCCAGTGCCGAACCTTAC 45182 |||||||| || || | | || || || | | ||||| ||| | || || || || Sbjct 70292 GGAATGGGGCGTTTACCCGAGGAAGTTCCCCGTCGATCGCGTACCAATTCCCAATCTAAC 70351 Query 45183 GCATTTGTTATACGGTTTTATTCCTATATGCGGTGGCGATGGCATTAATGACAGTCTTAA 45242 || | | || ||||||||||| || || ||||| ||||||||||| |||||| | || Sbjct 70352 TCACCTTCTGTATGGTTTTATTCCAATTTGTGGTGGAGATGGCATTAACGACAGTTTAAA 70411 Query 45243 AACGATTACAGGCAGTTTTGAAGCGTTGCAAAAATCGTGCGCCGGCCGCTCAGATTTCAA 45302 || ||| ||||| |||| | ||| || ||| || ||| || || || Sbjct 70412 GGAAATCGAAGGAAGTTTCCAAGCACTTCAACGTTCTTGCAGTGGTCGCGAGGACTTTAA 70471 Query 45303 AGTGAGCATTCACGACCCATGGGCCGCTGTGCAAAAACCACAAAAAGGCGTTTCTGCTTG 45362 ||| |||||||| || ||||| || | || ||||| || ||||| | || |||| Sbjct 70472 AGTATCTATTCACGATCCCTGGGCAGCCTTACAGAAACCTCAGAAAGGTCTATCATCTTG 70531 Query 45363 GAACGAACCGTATAAAGGCAATTTTGGACAAATCATGGCTGTAAAACGGGCAAATCCTCA 45422 ||| ||||| || |||||||| || || ||| | ||| | | |||| || | ||| | Sbjct 70532 GAATGAACCATACAAAGGCAACTTCGGTCAACTGATGTCATTGAAACAAGCGAGACCTGA 70591 Query 45423 TTTAAAAGTGTTGCCATCGATTGGCGGCTGGACGCTGTCCGATCCGTTTTACCATTT--- 45479 | || | | || || ||||| || ||||| || | |||||||| | | ||| Sbjct 70592 CCTGAAGATTCTTCCTTCTATTGGAGGATGGACATTGGCTGATCCGTTCTTCTTTTTTAC 70651 Query 45480 GCACGATGCGGAGA-AACGCGCTTTGTTTGTGGAATCCGTGCGCGAATT--TTTAACTAC 45536 || | | ||| ||| ||||| ||| || || || || || || || || Sbjct 70652 TGACAAGACCAAGAGAACTCGCTTCGTT----GACTCAGTCAAAGAGTTCCTTCAA--AC 70705 Query 45537 GTGGAAATTTTTTGACGGAGTCGATATAGATTGGGAGTTTCCCGGCGGCAATGGCGCCAA 45596 ||||||||||| || || || || || ||||||||||| || || || || ||||| || Sbjct 70706 CTGGAAATTTTTCGATGGTGTTGACATTGATTGGGAGTTCCCTGGTGGTAAAGGCGCTAA 70765 Query 45597 TCCATCGGTGGGCGATCCAGAACGCGACGGTCTCACTTATGTAGCACTGCTGCGCGATTT 45656 || | | || |||||| |||||| ||| || || || || | Sbjct 70766 CCCTACCTTTGGAAGCCCAGAA---GACGGTGATGTTTACGTCAACCTCATGAAGGAACT 70822 Query 45657 GCGCGACATGCTCGATCAATTGGCGCACGAAACCGGTCGGCGCTACGAACTGACTACGGC 45716 || || ||||| || || | | ||| ||| ||| || |||||| |||| | || Sbjct 70823 CCGTGAAATGCTTGACGAACTTTCTCACTCAACTGGTAGGAAATACGAATTGACATCAGC 70882 Query 45717 TATAAGCGCCGGTGACGACAAAATCGCTTTGGTAGATTATCAAGACGCGCAAACTTATCT 45776 ||| ||||| ||| ||||||||| | || || || | || |||| || | Sbjct 70883 TATCAGCGCTGGTTGGGACAAAATCCAGGTAGTTGACTACAGCAAAGCCCAAAACTACAT 70942 Query 45777 CGATCGAATCTTTTTAATGACGTATGATTTTAAAGGCGCTTGGTCGAACTCGGATTTGGG 45836 || | || || | |||| ||||| || || || |||||||| ||| | |||| Sbjct 70943 GGACCACATTTTCCTGATGAGTTATGACTTCAAGGGAGCTTGGTCTAACGACACTCTGGG 71002 Query 45837 CCATCAAACGGCCGTGTACGCGCCAGAATGGAATCGCGACGAGCGTTACACAGTCGACTA 45896 || || || | | ||||| ||||||||||||| | || ||| || ||| | Sbjct 71003 GCACCAGACACCTTTATACGCTCCAGAATGGAATCCTAAAGAAACTTATACTACCGATTT 71062 Query 45897 CGCGGTGCACGTTTTGCTCGAAAAACGGGTAAAGCCTCAAAAAATCGTGCTCGGCGTGGC 45956 | || | ||| | | || | || || || | || ||| | |||| ||||| Sbjct 71063 TGGTGTAAAATACTTGTTAGCTCAAGGTGTGAACCCGAAGAAGATCATCGTCGGAGTGGC 71122 Query 45957 AATGTACGGTCGCGGCTGGACCGGAGTAATTAACTATCAAGACGACAACCCGTTTACCGG 46016 ||||||||| || |||||||| || || || | ||| |||| || || || || Sbjct 71123 AATGTACGGACGTGGCTGGACTGGCGTCCACGGGTACGAGGACAACAATCCCTTCACTGG 71182 Query 46017 CATCGCAACCGGGCCCGTGTCCGGCACTTGGGAAGACGGTGTGATCGATTATCGACAAAT 46076 || |||||| || || || || || ||| |||||||||| ||||||| || |||| Sbjct 71183 CAACGCAACAGGACCAGTCAAGGGAACCTGGCAAGACGGTGTAGTCGATTACAGAGAAAT 71242 >seq2668 Length=134947 Score = 179 bits (198), Expect = 3e-40 Identities = 199/263 (76%), Gaps = 3/263 (1%) Strand=Plus/Minus Query 89705 GCTCGGTTGCGCACTTTTGAACGCAACTGGCCTTGCGCTTTGAAACAAAAACCTGAGCAG 89764 ||||| || ||||| ||| || | | ||||| || | ||||||||||||| ||| | Sbjct 31149 GCTCGATTACGCACCTTT-AAGG--ATTGGCCCCGCAGTATGAAACAAAAACCCGAGGAA 31093 Query 89765 TTGGCGGATGCCGGttttttttACACGGGCCAAGGCGACAAGACGATTTGTTTCTTTTGC 89824 | || || || || ||||| || || || | || || |||||| | || || | ||| Sbjct 31092 CTTGCCGAAGCTGGCTTTTTCTATACCGGTAACGGAGATAAGACGTTGTGCTTTTATTGT 31033 Query 89825 AACGGGGGCCTTAAGGATTGGGAAGATGGCGATGAACCTTGGGAACAACATGCGCGCTGG 89884 ||||||| |||| ||||||||| | | ||||| ||| ||||| |||||||| || ||| Sbjct 31032 GACGGGGGTCTTAGGGATTGGGAGAACGACGATGTACCGTGGGAGCAACATGCTCGTTGG 30973 Query 89885 TTTGATAATTGCATCTATGTTCAACTAGTAAAAGGACGCGATTACGTGCAAAATGTTATT 89944 || ||| ||| |||||| ||||| |||||||| || |||||||| ||||| |||||| Sbjct 30972 TTCGATCGCTGCGCCTATGTACAACTCGTAAAAGGGCGGGATTACGTACAAAAAGTTATT 30913 Query 89945 TCGAACGCTTGCGTTATACCCGC 89967 ||| | ||||| || |||||||| Sbjct 30912 TCGGAAGCTTGTGTCATACCCGC 30890 >seq5066 Length=19128 Score = 156 bits (172), Expect = 3e-33 Identities = 167/218 (77%), Gaps = 2/218 (1%) Strand=Plus/Minus Query 29571 ACGCAGCACCAAATGAAGCGTGGATTCTTTTTGAATGTTATAATCCGCAATGGTGCGAGA 29630 ||| || ||||| ||||| || || || |||||||| ||||| || | | || ||| Sbjct 19066 ACGAAGTACCAAGTGAAGTGTAGACTCCTTTTGAATATTATAGTCTGATAGTGTACGACC 19007 Query 29631 ATCATCGAGTTGTTTGCCAGCATATATCAATCTTTGCTGATCCGGCGGAATACCCTCTTT 29690 || || ||||| ||||||||| | ||||| | || ||||| || ||||| || ||||| Sbjct 19006 GTCTTCAAGTTGCTTGCCAGCAAAGATCAAACGCTGTTGATCTGGGGGAATGCCTTCTTT 18947 Query 29691 GTCTTGTAATTTTTG-TTTGACAGTTTCTACAGTGTCAGAAAGTTCTACTTCAAGAGTTA 29749 |||||| ||| |||| ||||||| | || | ||| || ||| |||| ||||| || |||| Sbjct 18946 GTCTTG-AATCTTTGCTTTGACATTCTCGATAGTATCCGAAGGTTCAACTTCGAGCGTTA 18888 Query 29750 TAGTTTTGCCAGTTAAGGTTTTAACAAATATCTGCATT 29787 ||||||| || || | |||||||| || ||||||||| Sbjct 18887 TAGTTTTACCTGTAAGAGTTTTAACGAAAATCTGCATT 18850 Score = 138 bits (152), Expect = 9e-28 Identities = 166/223 (74%), Gaps = 2/223 (1%) Strand=Plus/Minus Query 29572 CGCAGCACCAAATGAAGCGTGGATTCTTTTTGAATGTTATAATCCGCAATGGTGCGAGAA 29631 || || |||| ||| | || ||||||||||||||||||||||| | | ||| ||| | Sbjct 18837 CGGAGAACCAGATGTAAGGTAGATTCTTTTTGAATGTTATAATCGGATAAGGTTCGACCA 18778 Query 29632 TCATCGAGTTGTTTGCCAGCATATATCAATCTTTGCTGATCCGGCGGAATACCCTCTTTG 29691 || || || || || |||||| | ||||| | ||||||||| || ||||| || |||||| Sbjct 18777 TCTTCAAGCTGCTTTCCAGCAAAAATCAAACGTTGCTGATCTGGGGGAATGCCTTCTTTG 18718 Query 29692 TCTTGTAATTTTTG-TTTGACAGTTTCTACAGTGTCAGAAAGTTCTACTTCAAGAGTTAT 29750 ||||| ||| || | ||| || |||| | || || || |||| ||||| | ||| || Sbjct 18717 TCTTG-AATCTTCGCTTTAACGTTTTCGATGGTATCGGATGGTTCAACTTCTAAAGTAAT 18659 Query 29751 AGTTTTGCCAGTTAAGGTTTTAACAAATATCTGCATTTTAAAA 29793 ||| || || || | || || || || |||||||| || ||| Sbjct 18658 AGTCTTACCCGTGAGAGTCTTCACGAAAATCTGCATCTTGAAA 18616 >seq1291 Length=99781 Score = 82.4 bits (90), Expect = 6e-11 Identities = 97/129 (75%), Gaps = 2/129 (2%) Strand=Plus/Minus Query 29662 CTTTGCTGATCCGGCGGAATACCCTCTTTGTCTTGTAATTTTTG-TTTGACAGTTTCTAC 29720 || ||||| || || || || |||||||||||||| |||||| | || ||| |||| | Sbjct 93340 CTCTGCTGGTCGGGAGGGATTCCCTCTTTGTCTTG-AATTTTAGCCTTCACATTTTCGAT 93282 Query 29721 AGTGTCAGAAAGTTCTACTTCAAGAGTTATAGTTTTGCCAGTTAAGGTTTTAACAAATAT 29780 || ||||| | || || |||||||| || || ||||| || | ||| || || || || Sbjct 93281 GGTATCAGACGGCTCGACCTCAAGAGTGATGGTCTTGCCCGTGAGGGTCTTGACGAAAAT 93222 Query 29781 CTGCATTTT 29789 |||||| || Sbjct 93221 CTGCATCTT 93213 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 385180415769801