Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Melitaea_20cinxia_20[genbank_20GCA_5F000716385.1_202014-07-09] 8,261 sequences; 389,907,520 total letters Query= NC_023681.1 Length=152710 Score E Sequences producing significant alignments: (Bits) Value seq566 205 9e-48 seq538 134 1e-26 seq5066 107 2e-18 >seq566 Length=99533 Score = 205 bits (226), Expect = 9e-48 Identities = 342/492 (70%), Gaps = 2/492 (0%) Strand=Plus/Minus Query 19020 GGGTTAGCGCCATTGCCGCCTGGAAACTCCCAATCAATATCGACGCCATCGAAGAATTTC 19079 ||||||||||| || || || || |||||||||||||| || || |||||||| |||||| Sbjct 70768 GGGTTAGCGCCTTTACCACCAGGGAACTCCCAATCAATGTCAACACCATCGAAAAATTTC 70709 Query 19080 CACGTTTCTAGATACTCTTGGACTGAATCGATAAA-CGTCTGCCGTACGATCTTGTCGTG 19138 || |||| || |||||| |||||| || | || || | | | | ||||||| Sbjct 70708 CAGGTTTGAAGGAACTCTTTGACTGAGTCAACGAAGCGAGTTCTCTTGG-TCTTGTCAGT 70650 Query 19139 CATATGGTAAAATGGGTCCGAAAGTGTCCAGCCCCCGATCGAAGGTAGCACTTTTAGATG 19198 | | | | || || || | | |||||| || || || ||||| || | || || | Sbjct 70649 AAAAAAGAAGAACGGATCAGCCAATGTCCATCCTCCAATAGAAGGAAGAATCTTCAGGTC 70590 Query 19199 AGGGTTCGCCAATTTGGCTGCCATAAGTTGGCCAAAGTTGCCTTTGTACGGTTCGTTCCA 19258 ||| |||| ||| || ||| ||||| || |||||||||||||| ||||| ||||| Sbjct 70589 AGGTCTCGCTTGTTTCAATGACATCAGTTGACCGAAGTTGCCTTTGTATGGTTCATTCCA 70530 Query 19259 TGCGCTGACACCTTTTTGGGGTTTCTGTATGGCCGCCCAAGGATCGTGAATGGCCACTTT 19318 | | |||||| || |||||||||| ||| ||||| ||||||||||| | ||||| Sbjct 70529 AGATGATAGACCTTTCTGAGGTTTCTGTAAGGCTGCCCAGGGATCGTGAATAGATACTTT 70470 Query 19319 GAAGTCGGCACGACCGGCACACGAACGTTGCAACGCTTCGAAACTGCCCGGGACAGTTTT 19378 ||||| | ||||| || |||||||| | |||| |||||| || || || Sbjct 70469 AAAGTCCTCGCGACCACTGCAAGAACGTTGAAGTGCTTGGAAACTTCCTTCGATTTCCTT 70410 Query 19379 GAGGGCATCATTGATGCCGTCGCCACCGCACATGGGCACGAAACCGTACAACAAATGCGA 19438 | || || ||||| || ||||| || || || | ||||| |||| | || | Sbjct 70409 TAAACTGTCGTTAATGCCATCTCCACCACAAATTGGAATAAAACCATACAGAAGGTGAGT 70350 Query 19439 CAAGTTCGGTGTGGGCACTTTATCGACGGGAAACTGTCGCGGATACACACCCCATTCGAC 19498 | || || | || || ||||||||| |||| | ||| || || |||||||| || Sbjct 70349 TAGATTGGGAATTGGTACGCGATCGACGGGGAACTTCCTCGGGTAAACGCCCCATTCCAC 70290 Query 19499 AAAGTATGCACC 19510 ||| || || || Sbjct 70289 AAAATAAGCGCC 70278 >seq538 Length=46986 Score = 134 bits (148), Expect = 1e-26 Identities = 309/463 (67%), Gaps = 2/463 (0%) Strand=Plus/Plus Query 150994 TGCCAGTTCGTAACTGGCCTCGAGCGCAGCATGATACACAGTTTCAGCAATTTGTTTATT 151053 ||||| ||| |||| || || | || ||| || | ||||||| ||||||| ||| Sbjct 42060 TGCCAATTCACAACTAGCTTCTAAAGCTCCATAGTATATAGTTTCAAATATTTGTTGATT 42119 Query 151054 CAATAGAACGGCAGCATCGCTCACGTACGGTATGCGCAACATAACAAATGCATCGGCCAA 151113 | || || || | || ||| | || || | | || | ||||||||||| || || Sbjct 42120 AAGTAAAATTGCTTCTTCACTCTCATAGGGAAATCTCATTAACACAAATGCATCTGCTAA 42179 Query 151114 ACCTTGAATGCCTATGCCGATGGGACGATGGCGCATATTAGAtttttttGCAGTTTCAAT 151173 || |||| || ||||| || || | ||| |||||| || || ||||| | | Sbjct 42180 TCCCTGAACACCGATGCCAATAGGCCTATGTTTCATATTCGAATTCTTTGCTTCTGGCAC 42239 Query 151174 AGGGTAGAAATTGCGATCAATAATTTTATTCAAACTATTCACTACATGTTTGACCACAGT 151233 || ||||| || ||||||||| ||||| ||| | | ||| |||| | | | Sbjct 42240 TGGATAGAAGTTAACATCAATAATCTTATTTAAATTTTGTGTAACA-GTTTTAGTAACCT 42298 Query 151234 GTGC-AATAGTTGAAAATCAAAAGTATCATTATTGATATATTTATTGACGGCAATCGACG 151292 || ||| |||||||| |||||| | ||| | | | | |||| || || || |||| Sbjct 42299 GTTTTAATTTTTGAAAATTAAAAGTTTTATTTTCAACAAACATATTAACAGCTATGGACG 42358 Query 151293 CTAGATTACATACGGCAGTTTCGTCGGGCGCGCAATATTGTACTATTTCCGCACACAAAT 151352 ||| ||| || || || ||| || || | ||| | || ||||| | || | | Sbjct 42359 CTAAATTGCACACTGCCACTTCATCAGGTGATGTATACTCAACAATTTCTGTGCAAAGGT 42418 Query 151353 TGCTGCATTTTATCAATCCGCAATTACTTTGATTGCTTTTGCGGTTGCAAGCGTCCTTGT 151412 ||||||||||||| || ||| ||||||| ||||| | |||||||| || || | Sbjct 42419 TGCTGCATTTTATAGTGCCAAGATTTTTTTGATTACTTTTTCTGTTGCAAGAATCTTTAT 42478 Query 151413 ATAACATGTACGGTGTGCCGGTTTCGGCTTGAATTTCTATAAT 151455 | ||||| || ||||| || ||||| |||| |||||| || Sbjct 42479 ACAACATATATGGTGTTCCTGTTTCAACTTGTGCTTCTATTAT 42521 >seq5066 Length=19128 Score = 107 bits (118), Expect = 2e-18 Identities = 152/212 (72%), Gaps = 4/212 (2%) Strand=Plus/Minus Query 137202 AACTAAATGAATTGTAGATTCTTTTTGTATGTTGTAATCGCTCATTGTGCTCGAG--TCT 137259 ||| | ||| | |||||||||||||| ||||| |||||| | || |||| ||| Sbjct 18832 AACCAGATGTAAGGTAGATTCTTTTTGAATGTTATAATCGGATAAGGT--TCGACCATCT 18775 Query 137260 TCGAGTTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTTGTCG 137319 || || || || |||||| | |||| |||||||||||| || || |||||||||||||| Sbjct 18774 TCAAGCTGCTTTCCAGCAAAAATCAAACGTTGCTGATCTGGGGGAATGCCTTCTTTGTCT 18715 Query 137320 GTAATTTTTTGTTTTAGCTGTTCCACCGTGTCTGTGGGTTCTACTTCAACAGTCACCGTC 137379 ||| || ||| | | ||| | || || | ||||| ||||| | ||| | ||| Sbjct 18714 TGAATCTTCGCTTTAACGTTTTCGATGGTATCGGATGGTTCAACTTCTAAAGTAATAGTC 18655 Query 137380 TTGCCGGTCAATGTTTTTACGAATATTTGCAT 137411 || || || | || || ||||| || ||||| Sbjct 18654 TTACCCGTGAGAGTCTTCACGAAAATCTGCAT 18623 Score = 102 bits (112), Expect = 8e-17 Identities = 161/229 (70%), Gaps = 4/229 (2%) Strand=Plus/Minus Query 137185 CCTCCTCGTAAACGCAAAACTAAATGAATTGTAGATTCTTTTTGTATGTTGTAATCGCTC 137244 || || || | ||| | || || |||| |||||| || ||||| || || || || | Sbjct 19077 CCACCACGGAGACGAAGTACCAAGTGAAGTGTAGACTCCTTTTGAATATTATAGTC--TG 19020 Query 137245 ATTGTGCTCGA--GTCTTCGAGTTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAG 137302 || ||| ||| |||||| ||||| || |||||| |||||| ||| || ||||| || | Sbjct 19019 ATAGTGTACGACCGTCTTCAAGTTGCTTGCCAGCAAAGATCAAACGCTGTTGATCTGGGG 18960 Query 137303 GTATGCCTTCTTTGTCGGTAATTTTTTGTTTTAGCTGTTCCACCGTGTCTGTGGGTTCTA 137362 | |||||||||||||| ||| ||| ||| | | || | || || | ||||| | Sbjct 18959 GAATGCCTTCTTTGTCTTGAATCTTTGCTTTGACATTCTCGATAGTATCCGAAGGTTCAA 18900 Query 137363 CTTCAACAGTCACCGTCTTGCCGGTCAATGTTTTTACGAATATTTGCAT 137411 |||| | || | || || || || | ||||| ||||| || ||||| Sbjct 18899 CTTCGAGCGTTATAGTTTTACCTGTAAGAGTTTTAACGAAAATCTGCAT 18851 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 488493551725200