Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Melitaea_20cinxia_20[genbank_20GCA_5F000716385.1_202014-07-09] 8,261 sequences; 389,907,520 total letters Query= NC_024625.1 Length=151109 Score E Sequences producing significant alignments: (Bits) Value seq538 89.7 5e-13 seq5066 87.8 2e-12 seq2668 84.2 2e-11 >seq538 Length=46986 Score = 89.7 bits (98), Expect = 5e-13 Identities = 127/179 (71%), Gaps = 0/179 (0%) Strand=Plus/Plus Query 148815 TTCACGGCGATAGAGGCTAGATTGCACACGGCCGTCTCATCCGGGGCGCTGTACTCTACG 148874 || || || || || |||| ||||||||| ||| ||||| || | | ||||| || Sbjct 42343 TTAACAGCTATGGACGCTAAATTGCACACTGCCACTTCATCAGGTGATGTATACTCAACA 42402 Query 148875 ATCTCGGCGCACAGATTGCTGCATTTGATCACGCCCACGTTCTTTTGATTGCTCTTGCTG 148934 || || | ||| || ||||||||||| || ||| | || |||||||| || || ||| Sbjct 42403 ATTTCTGTGCAAAGGTTGCTGCATTTTATAGTGCCAAGATTTTTTTGATTACTTTTTCTG 42462 Query 148935 TTGCACGCGTCCTTGTACAGCATGTACGGTCCGCCAGTTTCCACCTGCGTTTCCACTAT 148993 ||||| | || || |||| ||| || ||| || ||||| || || | ||| | ||| Sbjct 42463 TTGCAAGAATCTTTATACAACATATATGGTGTTCCTGTTTCAACTTGTGCTTCTATTAT 42521 >seq5066 Length=19128 Score = 87.8 bits (96), Expect = 2e-12 Identities = 140/199 (70%), Gaps = 4/199 (2%) Strand=Plus/Minus Query 133464 GTGGACTCTTTCTGTATATTGTAATCGCCCATCGTGGACGA--GTCCTCGAGCTGCTTGC 133521 || ||||| || || ||||| || || || ||| |||| ||| || || ||||||| Sbjct 19047 GTAGACTCCTTTTGAATATTATAGTCTG--ATAGTGTACGACCGTCTTCAAGTTGCTTGC 18990 Query 133522 CCGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGATCTTTTGCT 133581 | || | || | ||||| || || || || |||||||| ||||| |||||| | Sbjct 18989 CAGCAAAGATCAAACGCTGTTGATCTGGGGGAATGCCTTCTTTGTCTTGAATCTTTGCTT 18930 Query 133582 TGAGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTGCCGGTCAGAG 133641 ||| | ||| | || || | || || || |||| || | ||||| || || |||| Sbjct 18929 TGACATTCTCGATAGTATCCGAAGGTTCAACTTCGAGCGTTATAGTTTTACCTGTAAGAG 18870 Query 133642 TTTTTACGAAAATCTGCAT 133660 |||| |||||||||||||| Sbjct 18869 TTTTAACGAAAATCTGCAT 18851 >seq2668 Length=134947 Score = 84.2 bits (92), Expect = 2e-11 Identities = 109/151 (72%), Gaps = 0/151 (0%) Strand=Plus/Plus Query 50030 AACGGACACTGCGGCGCCCAGCGCGCGTGGTCGGTGGCCACGTCGTCGCCCTCCATCCAC 50089 || ||||||||||||||||| ||| ||||| | || ||||| || |||| |||| Sbjct 31295 AAAGGACACTGCGGCGCCCATCGCTGATGGTCTTTCGCAGGATCGTCACCTTCCACCCAC 31354 Query 50090 CGCATGATTTCTACCTTGCAGAATGCGCAGCGCACGGTGTCGCCGTTGCCAAAATAGTAG 50149 ||||||||| ||||| ||||| ||||| | ||| ||| || || | ||| || Sbjct 31355 TTCATGATTTCCACCTTACAGAACGCGCATCTCACCTCGTCTCCTCGTCCGAGATAATAA 31414 Query 50150 AATCCGTTGCGCGCCAGCTGCTCGGGCGACA 50180 |||||||| ||| || | ||||| |||| Sbjct 31415 AATCCGTTTTTCGCGAGAAGTTCGGGGGACA 31445 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 483370880759640