Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Melitaea_20cinxia_20[genbank_20GCA_5F000716385.1_202014-07-09] 8,261 sequences; 389,907,520 total letters Query= NC_024697.1 Length=370920 Score E Sequences producing significant alignments: (Bits) Value seq538 244 3e-59 seq2606 132 1e-25 >seq538 Length=46986 Score = 244 bits (270), Expect = 3e-59 Identities = 440/639 (69%), Gaps = 17/639 (3%) Strand=Plus/Minus Query 110511 CAATTGGCTTCTTGCTTTCTTCTAGGAATTAACGATGATTCTATTGAAGGTATTTATGAT 110570 |||||| ||||||| || ||| ||| || || ||||| ||| ||||| || |||||| Sbjct 43058 CAATTGTCTTCTTGTTTCCTTGTAGCTATGAAAGATGACAGTATCGAAGGAATATATGAT 42999 Query 110571 GCTCTTAAAGAAACTGCTCTTATTTCTAAAAACTCTGGAGGAATTGGTATTCACGTTCAT 110630 | || ||| || ||| | ||||| || ||||||| || ||| |||| || ||| Sbjct 42998 ACACTAAAACAATGTGCATTAATTTCCAAGTCAGCTGGAGGTATCGGTGTTCATGTGCAT 42939 Query 110631 GATATTCGCTCAAAAGGAGCAAATATCGCAACAGCGAAGGGTGCTTCAACTGGACTTGTT 110690 || | | |||||| | |||| || | || || ||| | ||| |||||| Sbjct 42938 TGCATAAGAGCTAAAGGAACTTATATTGCTGGTACAAATGGGATTTCCAATGGTCTTGTT 42879 Query 110691 CCAATGTTAAGAGTCTTCAACGACACTGCAAAATATGTGAATCAAGGTGGTAAGA---GA 110747 || ||||||||||||| || ||||||| | ||||||| ||||||| ||||| | | Sbjct 42878 CCTATGTTAAGAGTCTATAATAACACTGCCAGATATGTGGATCAAGGGGGTAACAAACGC 42819 Query 110748 AATGGCTCATTTGCTATCTATCTCGAACCTTGGCATTCAGATATATTTGAATTCTTAGAA 110807 ||| ||||||| | ||| | ||||||||||| ||||| | |||||||| ||||| Sbjct 42818 CCTGGAGCATTTGCAGTGTATTTGGAACCTTGGCACGCAGATGTCTTTGAATTTTTAGA- 42760 Query 110808 CTTCGTAAAAATCAA----GGATTTGAAGAACAAAGAGCACGTGATTTATTTTATGCAAT 110863 || |||||| || || |||||| | ||||| | || ||||| ||||| | Sbjct 42759 -TT--TAAAAAAGAATACTGGTAAAGAAGAAGTACGAGCAAGAGAATTATTCTATGCTTT 42703 Query 110864 GTGGATTTCAGATTTATTCATGAAACGTGTTCAAGAAAATGGCATGTGGTCTCTTATGTG 110923 ||||| ||||||| || |||||||| || || |||||| | ||| ||||||||| Sbjct 42702 ATGGATACCAGATTTGTTTATGAAACGGGTAGAAAAAAATGAAAATTGGAGTCTTATGTG 42643 Query 110924 TCCTCATCGTTCTCCTGGTCTATCTGATGTATATGGAAAAGAGTTTGAAGACCTTTACGA 110983 |||||| | ||||| | ||||| | || |||| ||||||| | || || Sbjct 42642 TCCTCACAACTGCCCTGGATTGGCTGATTGTTGGGGTGAAGAATTTGAAGCTTTATATGA 42583 Query 110984 AAAATATGAAAAAGAAGGCAAGTTTCGCAAACAAATTCCAGCTCAAGAACTTTGGTTCAA 111043 ||| |||||| ||||| | | |||||| ||| || || | ||| || || Sbjct 42582 AAAGTATGAACAAGAAAAACGCTATGTAAAACAAGTTCGTGCACAGG---TTTTGTGGAA 42526 Query 111044 ---AATCCTTGAATCACAAGTTGAAACTGGAACTCCTTATATTTTGTATAAAGATCATAT 111100 ||| | ||| ||||||||||||| ||||| || ||||| |||||||||||| | Sbjct 42525 AGCAATAATAGAAGCACAAGTTGAAACAGGAACACCATATATGTTGTATAAAGATTCTTG 42466 Query 111101 TAATCGCAAATCTAATCAAATGAATTTAGGAACAATTAA 111139 || | ||| |||||||| ||| | || || || || Sbjct 42465 CAACAGAAAAAGTAATCAAAAAAATCTTGGCACTATAAA 42427 >seq2606 Length=145689 Score = 132 bits (146), Expect = 1e-25 Identities = 138/181 (76%), Gaps = 0/181 (0%) Strand=Plus/Minus Query 305307 GACATTTGAATGACAATGATTGGGTTCTGTTCAATAGGCAACCATCACTGCATAAAATGT 305366 ||||||||| ||| |||| |||| | ||||| || || || |||| || || ||| Sbjct 117500 GACATTTGAGAGACGATGACCTGGTTATTTTCAACAGACAGCCTACACTACACAAGATGA 117441 Query 305367 CTATGATGGCTCATAAAGTCAAAGTATTATCTGGATTGACATTTCGATTAAATGTAAGTG 305426 |||||||| ||||| ||| ||||||||| | | | ||||||||| | || | ||| Sbjct 117440 GTATGATGGGTCATAGAGTAAAAGTATTACCATGGTCAACATTTCGAATGAACTTGAGTT 117381 Query 305427 CTTGTACGCCTTATAATGCGGATTTTGATGGAGATGAAATGAATATGCATGTACCTCAAT 305486 | | |||| || ||||| |||||||||||||||||||||||| | |||||||| |||| Sbjct 117380 GTACTTCGCCATACAATGCTGATTTTGATGGAGATGAAATGAATTTACATGTACCACAAT 117321 Query 305487 C 305487 | Sbjct 117320 C 117320 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1186687182911821