Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Melitaea_20cinxia_20[genbank_20GCA_5F000716385.1_202014-07-09]
8,261 sequences; 389,907,520 total letters
Query= NC_025257.1
Length=102759
Score E
Sequences producing significant alignments: (Bits) Value
seq5066 104 2e-17
>seq5066
Length=19128
Score = 104 bits (114), Expect = 2e-17
Identities = 162/229 (71%), Gaps = 2/229 (1%)
Strand=Plus/Minus
Query 33522 ACCACCTCTCAAACGTAACACCAAATGTAGAGTGCTCTCTTTTTGTATGTTGTAATCGGA 33581
|||||| | | ||| | ||||| || || || ||| ||||| || || || || ||
Sbjct 19078 ACCACCACGGAGACGAAGTACCAAGTGAAGTGTAGACTCCTTTTGAATATTATAGTCTGA 19019
Query 33582 GAGTGTGCGTTCGTCGTCCAATTGTTTTCCGGCAAAAATCAAACGCTGCTGATCTTGCGG 33641
||||| || |||| || | ||| || || ||||| ||||||||||| |||||| | ||
Sbjct 19018 TAGTGTACGACCGTCTTCAAGTTGCTTGCCAGCAAAGATCAAACGCTGTTGATCTGGGGG 18959
Query 33642 CACACCTTCTTTGTCGGCAATTTTCTGTTTCAACATAGTC-ACGGTGTCGCTTGATTCCA 33700
| ||||||||||| ||| || || || |||| || | || || | ||| |
Sbjct 18958 AATGCCTTCTTTGTCTTGAATCTT-TGCTTTGACATTCTCGATAGTATCCGAAGGTTCAA 18900
Query 33701 CGTCAACCGTGATCGTTTTACCTGTTAACGTTTTTACAAAGATCTGCAT 33749
| || | ||| || ||||||||||| | ||||| || || ||||||||
Sbjct 18899 CTTCGAGCGTTATAGTTTTACCTGTAAGAGTTTTAACGAAAATCTGCAT 18851
Score = 102 bits (112), Expect = 5e-17
Identities = 150/210 (71%), Gaps = 2/210 (1%)
Strand=Plus/Minus
Query 33541 ACCAAATGTAGAGTGCTCTCTTTTTGTATGTTGTAATCGGAGAGTGTGCGTTCGTCGTCC 33600
|||| ||||| || |||||||| ||||| |||||||| | || || | || ||
Sbjct 18831 ACCAGATGTAAGGTAGATTCTTTTTGAATGTTATAATCGGATAAGGTTCGACCATCTTCA 18772
Query 33601 AATTGTTTTCCGGCAAAAATCAAACGCTGCTGATCTTGCGGCACACCTTCTTTGTCGGCA 33660
| || ||||| |||||||||||||| ||||||||| | || | ||||||||||| |
Sbjct 18771 AGCTGCTTTCCAGCAAAAATCAAACGTTGCTGATCTGGGGGAATGCCTTCTTTGTCTTGA 18712
Query 33661 ATTTTCTGTTTCAACATAGTC-ACGGTGTCGCTTGATTCCACGTCAACCGTGATCGTTTT 33719
|| ||| | || ||| | || | ||| ||| || ||| || || | || || || ||
Sbjct 18711 ATCTTC-GCTTTAACGTTTTCGATGGTATCGGATGGTTCAACTTCTAAAGTAATAGTCTT 18653
Query 33720 ACCTGTTAACGTTTTTACAAAGATCTGCAT 33749
||| || | || || || || ||||||||
Sbjct 18652 ACCCGTGAGAGTCTTCACGAAAATCTGCAT 18623
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 328670905773120
| Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |