Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Melitaea_20cinxia_20[genbank_20GCA_5F000716385.1_202014-07-09] 8,261 sequences; 389,907,520 total letters Query= NC_025960.1 Length=148981 Score E Sequences producing significant alignments: (Bits) Value seq566 214 2e-50 seq538 174 1e-38 seq5066 120 3e-22 >seq566 Length=99533 Score = 214 bits (236), Expect = 2e-50 Identities = 780/1199 (65%), Gaps = 28/1199 (2%) Strand=Plus/Plus Query 24829 GCTTACTTCGTCGAGTGGGGCGTGTATCAGCGGCAGTTTTCCGTCGACAAAGTGCCCGCG 24888 ||||| || || || |||||||| || | | || |||| ||||||| || || Sbjct 70281 GCTTATTTTGTGGAATGGGGCGTTTACCCGAGGAAGTTCCCCGTCGATCGCGTACCAATT 70340 Query 24889 CCCAATTTGTCGCACTTGCTATACGCTTTCGTGCCGATATGCGGCGGCGAGGGCATAAAC 24948 |||||| | | ||| | || || | ||| | || || || || || || ||||| ||| Sbjct 70341 CCCAATCTAACTCACCTTCTGTATGGTTTTATTCCAATTTGTGGTGGAGATGGCATTAAC 70400 Query 24949 GACGCTCTCAAAACAGTTCCCGGTAGTTTTGAGGCGCTGCAGCGCTCGTGCGCCGGGCGC 25008 ||| | | || | | || ||||| | || || || || || ||| || ||| Sbjct 70401 GACAGTTTAAAGGAAATCGAAGGAAGTTTCCAAGCACTTCAACGTTCTTGCAGTGGTCGC 70460 Query 25009 GACGATTTTAAGGTAACCATTCACGACCCCTGGGCCGCCATCCAGAAACCGCAGAAAGGC 25068 || || ||||| ||| | |||||||| |||||||| ||| | |||||||| |||||||| Sbjct 70461 GAGGACTTTAAAGTATCTATTCACGATCCCTGGGCAGCCTTACAGAAACCTCAGAAAGGT 70520 Query 25069 GTCTCCACTTGGAACGAGCCGTACAAAGGCAACTTTGGACAATTAATGGGCCTGAAATTA 25128 | || ||||||| || || |||||||||||||| || ||| | ||| ||||| | Sbjct 70521 CTATCATCTTGGAATGAACCATACAAAGGCAACTTCGGTCAACTGATGTCATTGAAACAA 70580 Query 25129 GCTAATCCACACTTGAAGGTGCTGGCGTCGATCGGCGGCTGGACCTTGTCAGATCCATTC 25188 || | || || ||||| | || | || || || || ||||| ||| | ||||| ||| Sbjct 70581 GCGAGACCTGACCTGAAGATTCTTCCTTCTATTGGAGGATGGACATTGGCTGATCCGTTC 70640 Query 25189 TTTCACATGCATGACGCGACCGTGCGTCAAACG-TTCATCGATTCCGTCGAGGACTTTCT 25247 || | |||| |||| | | | || ||| | || || ||| | || || || Sbjct 70641 TTCTTTTTTACTGACAAGACCAAGAG-AACTCGCTTCGTTGACTCAGTCAAAGAGTTCCT 70699 Query 25248 CTTGACTTGGAAGTTTTTCGACGGCGTCGACATTGACTGGGAGTTTCCGGGCGGCAAAGG 25307 || ||||| |||||||| || || |||||||| |||||||| || || || ||||| Sbjct 70700 TCAAACCTGGAAATTTTTCGATGGTGTTGACATTGATTGGGAGTTCCCTGGTGGTAAAGG 70759 Query 25308 GGCCAATCCTCACGTCGGCAACGCCGAGCGCGACCGCGCCACATACACCGCCCTCCTGCA 25367 || || ||| | | || | ||| || ||| | | ||| | |||| || | Sbjct 70760 CGCTAACCCTACCTTTGG--AAGCCCAG-AAGACGGTGATGTTTACGTCAACCTCATGAA 70816 Query 25368 GGAGCTGCGCAATCGACTGGACGCGC-TCGGCGCTCGCACCGATCGCTACTATCCGCTGA 25426 ||| || || | || |||| | | | ||| || | | | | || ||| Sbjct 70817 GGAACTCCGTGAAATGCTTGACGAACTTTCTCACTC-AACTGGTAGGAAATACGAATTGA 70875 Query 25427 CATCGGCCATCAGCGCGGGCAACGACAAGATCGCCGTGGTCGATTACTCCGAAGCGCAAA 25486 |||| || |||||||| || ||||| ||| || || || ||| | |||| |||| Sbjct 70876 CATCAGCTATCAGCGCTGGTTGGGACAAAATCCAGGTAGTTGACTACAGCAAAGCCCAAA 70935 Query 25487 AGTACCTCGACACAATTTTCTTGATGACATACGATTTTAAAGGCGCGTGGAGCAACACCG 25546 | ||| | ||| |||||| |||||| || || || || || || ||| ||| | Sbjct 70936 ACTACATGGACCACATTTTCCTGATGAGTTATGACTTCAAGGGAGCTTGGTCTAACGACA 70995 Query 25547 ATTTGGGCCATCAGGCGGCACTCTTCGCGCCCGCGTGGCGTCCTGACGAACC--ATACTG 25604 | |||| || ||| | | | | ||| || | ||| |||| | ||| | ||||| Sbjct 70996 CTCTGGGGCACCAGACACCTTTATACGCTCCAGAATGGAATCCTAAAGAAACTTATACT- 71054 Query 25605 CGCCGATCGTGCCGTCGAGTCGCTTCTCGATCAAAACGT--TCCTGCCGGCAAAATAGCC 25662 ||||| || || | | | | | |||| || || | | || || | Sbjct 71055 -ACCGATTTTGGTGTAAAATACTTGTTAGCTCAAGGTGTGAACCCGAAG--AAGATCATC 71111 Query 25663 ATCGGCGTCGCCATGTATGGCCGCGGTTGGACCGGAGT-GACGAGT--GATGACAAAAAC 25719 |||| || || ||||| || || || ||||| || || ||| || || ||||| || Sbjct 71112 GTCGGAGTGGCAATGTACGGACGTGGCTGGACTGGCGTCCACGGGTACGAGGACAACAAT 71171 Query 25720 CCATTCTTGGGCGTCGCCACCGGGCCCGTGGCCGGCACTTGGGAGGCGGGCGTCGTTGAT 25779 || ||| ||| ||| || || || || || || ||| | | || || || ||| Sbjct 71172 CCCTTCACTGGCAACGCAACAGGACCAGTCAAGGGAACCTGGCAAGACGGTGTAGTCGAT 71231 Query 25780 TACCGACAAATTGTTCACAACCTTACCCA-GTACAAT---TATT--ATTACGACGAAGTG 25833 ||| || |||| | || | || |||| | | ||| ||| ||||||| | || Sbjct 71232 TACAGAGAAATAGCGAACGAAATTGCCCAGGGAAAATGGGAATTCCATTACGATAACGTA 71291 Query 25834 GCCAAAGGCGCGTACGTGTATAACCACGATAAC-GGCAACCTAATCACTTACGACAATCC 25892 || ||| | ||||||| | | || || || |||| | ||||||||||| | Sbjct 71292 GCACAAGCACCATACGTGT-TCAGACCGTCCACTGGGGACCTTGTAACTTACGACAACGC 71350 Query 25893 TAAATCTGTCGCCGACAAAACTAAATATGTGCTCGATCATGAA-TTGGCGGGCGTTTTCA 25951 || ||| ||| ||| ||| ||||| ||| || || || | ||||| | | ||| Sbjct 71351 TAGATCCGTCATCGAAAAAGGCAAATACGTGAGAAATAATAAACTCGGCGGTC-TATTCG 71409 Query 25952 GTTGGGAAATTGACGCCGACAACGGAGACCTTCTCAACGCCATCAACAAGGGATTAGGG 26010 |||||||| ||||| || |||||||| || |||||||| || |||| ||| ||||| Sbjct 71410 CCTGGGAAATAGACGCTGATAACGGAGATCTACTCAACGCAATGAACATGGGGCTAGGG 71468 >seq538 Length=46986 Score = 174 bits (192), Expect = 1e-38 Identities = 498/750 (66%), Gaps = 33/750 (4%) Strand=Plus/Plus Query 146890 TGATTGACCACTTGAAACTCGCCCGCCAGCACACGTCTGAGATACACATTGCTAGTGAAA 146949 || || || ||||||||||| || | | || || | | || | || ||| || Sbjct 41786 TGGTTAACAACTTGAAACTCACCAGATAATACCCGGCGTTGGTAAATGTTTGAAGTAAAT 41845 Query 146950 GGCTCAAAAGACTCATTATTGCCTAATATTTGGGCCGTGGTTGCGGTAGGCATGTACGCC 147009 || |||||||| |||||||| || | ||| || || |||| || || ||||| || Sbjct 41846 GGTTCAAAAGATTCATTATTTCCAAGTATCTGTGCTGTGGAAGCAGTTGGCATTGGAGCT 41905 Query 147010 ACCAACAATGAATTTCGCAGACCGTAC---GCACGGATGTTGTCCTTCAAAGTTTGCCAG 147066 | ||| | ||||| || ||||| | | ||| || || || || || | ||| Sbjct 41906 AACAAAAGGGAATTACGAAGACCATGCTTTGCA---ATTTT-TCTTTTAAGGCAGTCCAA 41961 Query 147067 TCCCACATCGACGAG--GGCGTCACGTTCCACATGTCGTACTGGAGCACTCCTCGACTGG 147124 ||||||| || || || ||| || ||||||||| || || | | ||| |||| | Sbjct 41962 TCCCACA--GATCAGTAGGAGTCTTGTCCCACATGTCATATTGTAAAATGCCTTGACTTG 42019 Query 147125 CGGGACTGCCAGCGAACGTAGTGTAGCTTCCGTCGCGCTGCGCCAATTCACAGCTTGCCT 147184 | ||||| ||| | | ||| ||| || || || ||||||||||| || || | Sbjct 42020 CAGGACTTCCATCATAACTAGAGTAAACACCTTCCTTCTCTGCCAATTCACAACTAGCTT 42079 Query 147185 CGAGCGCTCCATAGTATATGGTTTCGGCGATTTGTTTGTTTAGGACGGTCGCTTCTTCGC 147244 | | |||||||||||||| ||||| ||||||| || || | | |||||||| | Sbjct 42080 CTAAAGCTCCATAGTATATAGTTTCAAATATTTGTTGATTAAGTAAAATTGCTTCTTCAC 42139 Query 147245 TCTCGTAAGGCATACGCAGAAGCACAAAGGCATCGGCCAAACCCTGGATACCGACGCCGA 147304 |||| || || | | || | |||||| ||||| || || ||||| | ||||| ||| | Sbjct 42140 TCTCATAGGGAAATCTCATTAACACAAATGCATCTGCTAATCCCTGAACACCGATGCCAA 42199 Query 147305 TAGGTCGATGCTT----TTCG-TTGCTGCGCTTCGCGCTCGCTATGGGATAGTGGTTGCG 147359 |||| | ||| || |||| | || ||||| || | |||||| ||| Sbjct 42200 TAGGCCTATGTTTCATATTCGAATTCTTTGCTTCTGGC-----ACTGGATAGAAGTTAAC 42254 Query 147360 ATCAATAATCTTGTTGAGGTTACGCACTACAACTTTAGTTA-TTGTTTTGAGTTTCTCGA 147418 |||||||||||| || | || | ||| |||||| | |||||| | ||| | | Sbjct 42255 ATCAATAATCTTATTTAAATTTTGTGTAACAGTTTTAGTAACCTGTTTT-AATTTTTGAA 42313 Query 147419 AATCATAAGTCCCGTCTTCGACACGTACGCATTGGTTCACGGCGATAGACGCCAGATTGC 147478 ||| | |||| | ||| || | ||| || || || || ||||| | ||||| Sbjct 42314 AATTAAAAGTTTTATTTTCAAC----AAACAT--ATTAACAGCTATGGACGCTAAATTGC 42367 Query 147479 AGACGGCCGTCTCTTC-GGCGTCGCTGTACTGCACGATTTCGGCGCACAGGTTGCTGCAT 147537 | || ||| || || || | | | |||| || ||||| | ||| |||||||||||| Sbjct 42368 ACACTGCCACTTCATCAGGTGATG-TATACTCAACAATTTCTGTGCAAAGGTTGCTGCAT 42426 Query 147538 TTTATGACTCCCAA-ATTTTGCTGATTGCTTTTCCGATTGCACGCGTCTTTGAAGAGCAT 147596 ||||| | | |||| ||||| ||||| ||||| | ||||| | ||||| | | ||| Sbjct 42427 TTTAT-AGTGCCAAGATTTTTTTGATTACTTTTTCTGTTGCAAGAATCTTTATACAACAT 42485 Query 147597 GTACGGTCCGCCGGTCTCGACTTGCGTTTC 147626 || ||| || || || ||||| | ||| Sbjct 42486 ATATGGTGTTCCTGTTTCAACTTGTGCTTC 42515 >seq5066 Length=19128 Score = 120 bits (132), Expect = 3e-22 Identities = 143/194 (74%), Gaps = 0/194 (0%) Strand=Plus/Minus Query 131930 GACTCTTTTTGAATGTTGTAGTCGCTCATGGTACGCGAATCTTCGAGCTGTTTACCGGAA 131989 ||||| |||||||| || ||||| | ||||| ||||| || || || || | | Sbjct 19044 GACTCCTTTTGAATATTATAGTCTGATAGTGTACGACCGTCTTCAAGTTGCTTGCCAGCA 18985 Query 131990 TAGATTAGACGCTGTTGATCTGGAGGTATGCCTTCTTTATCGGTAATTTTTTGTTTCAAC 132049 |||| | ||||||||||||||| || ||||||||||| || ||| ||| ||| | Sbjct 18984 AAGATCAAACGCTGTTGATCTGGGGGAATGCCTTCTTTGTCTTGAATCTTTGCTTTGACA 18925 Query 132050 TGTTCCACAGTATCGGTCGGCTCCACTTCGACCGTCAGCGTTTTACCAGTCAGAGTTTTT 132109 | || | |||||| | || || ||||||| ||| | |||||||| || |||||||| Sbjct 18924 TTCTCGATAGTATCCGAAGGTTCAACTTCGAGCGTTATAGTTTTACCTGTAAGAGTTTTA 18865 Query 132110 ATGAAAATCTGCAT 132123 | |||||||||||| Sbjct 18864 ACGAAAATCTGCAT 18851 Score = 113 bits (124), Expect = 4e-20 Identities = 151/210 (72%), Gaps = 0/210 (0%) Strand=Plus/Minus Query 131914 AACCAAATGTATGTTTGACTCTTTTTGAATGTTGTAGTCGCTCATGGTACGCGAATCTTC 131973 ||||| ||||| | | || |||||||||||||| || ||| | ||| || |||||| Sbjct 18832 AACCAGATGTAAGGTAGATTCTTTTTGAATGTTATAATCGGATAAGGTTCGACCATCTTC 18773 Query 131974 GAGCTGTTTACCGGAATAGATTAGACGCTGTTGATCTGGAGGTATGCCTTCTTTATCGGT 132033 ||||| || || | | | || | ||| || |||||||| || ||||||||||| || Sbjct 18772 AAGCTGCTTTCCAGCAAAAATCAAACGTTGCTGATCTGGGGGAATGCCTTCTTTGTCTTG 18713 Query 132034 AATTTTTTGTTTCAACTGTTCCACAGTATCGGTCGGCTCCACTTCGACCGTCAGCGTTTT 132093 ||| || ||| | | ||| | ||||||| || || ||||| | || | || || Sbjct 18712 AATCTTCGCTTTAACGTTTTCGATGGTATCGGATGGTTCAACTTCTAAAGTAATAGTCTT 18653 Query 132094 ACCAGTCAGAGTTTTTATGAAAATCTGCAT 132123 ||| || ||||| || | |||||||||||| Sbjct 18652 ACCCGTGAGAGTCTTCACGAAAATCTGCAT 18623 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 476561983935960