Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Melitaea_20cinxia_20[genbank_20GCA_5F000716385.1_202014-07-09] 8,261 sequences; 389,907,520 total letters Query= NC_026268.1 Length=139132 Score E Sequences producing significant alignments: (Bits) Value seq566 378 6e-100 seq538 194 1e-44 >seq566 Length=99533 Score = 378 bits (418), Expect = 6e-100 Identities = 835/1239 (67%), Gaps = 35/1239 (3%) Strand=Plus/Plus Query 59892 GAACCAGCCCTTCGAAAGTCGAGTAGTGGATAAAGTCGTTGCCGCATATTTTGTCGAATG 59951 |||| ||||||| ||| || | |||| ||||| |||| ||| |||||||| ||||| Sbjct 70241 GAACAAGCCCTTT--AAGCAGACTTCTGGA-AAAGTAGTTGGCGCTTATTTTGTGGAATG 70297 Query 59952 GGGTGTTTATCCTAGAAATTTTCCTGTAGATCGAGTGCCCACTCCTAATCTATCGCATAT 60011 ||| ||||| || || || || || || ||||| || || | ||| |||||| | || | Sbjct 70298 GGGCGTTTACCCGAGGAAGTTCCCCGTCGATCGCGTACCAATTCCCAATCTAACTCACCT 70357 Query 60012 TCTATACGGATTTATTCCGATATGCGGCGGCGACGGTATCAACGACAGTCTTAAAACCAT 60071 ||| || || |||||||| || || || || || || || ||||||||| | || || Sbjct 70358 TCTGTATGGTTTTATTCCAATTTGTGGTGGAGATGGCATTAACGACAGTTTAAAGGAAAT 70417 Query 60072 AACCGGTAGTTTCGAAGCGCTTCAGCGATCGTGTTCAGGTCGAGACGACTTTAAAGTATC 60131 || |||||| |||| ||||| || || || ||||| || |||||||||||||| Sbjct 70418 CGAAGGAAGTTTCCAAGCACTTCAACGTTCTTGCAGTGGTCGCGAGGACTTTAAAGTATC 70477 Query 60132 AATTCACGATCCATGGGCCGCCGTCCAGAAACCCCAAAAACAAGTAACCGCTTGGAACGA 60191 ||||||||||| ||||| ||| | |||||||| || ||| || | ||||||| || Sbjct 70478 TATTCACGATCCCTGGGCAGCCTTACAGAAACCTCAGAAAGGTCTATCATCTTGGAATGA 70537 Query 60192 ACCATACAAAGGTAATTTCGGACAATTAATGGCAGCCAAACTGGCAAATCCCCACATCAA 60251 |||||||||||| || ||||| ||| | ||| || |||| || | || || | || Sbjct 70538 ACCATACAAAGGCAACTTCGGTCAACTGATGTCATTGAAACAAGCGAGACCTGACCTGAA 70597 Query 60252 AGTGTTGCCCTCGATCGGAGGTTGGACTCTATCCGATCCGTTCTTTTACTTTCACGATAC 60311 | | || || || ||||| ||||| | | ||||||||||| | ||| || | Sbjct 70598 GATTCTTCCTTCTATTGGAGGATGGACATTGGCTGATCCGTTCTTCTTTTTTACTGACAA 70657 Query 60312 GGATAAACGAAAGATTTTTGTAGATTCTGTCGTGGAGTTTCTACAGACGTGGAAATTTTT 60371 | || ||| || || || || ||| ||||| || || || ||||||||||| Sbjct 70658 GACCAAGAGAACTCGCTTCGTTGACTCAGTCAAAGAGTTCCTTCAAACCTGGAAATTTTT 70717 Query 60372 CGACGGTGTCGACATCGACTGGGAGTTTCCCGGCGGAAAAGGTGCCAATCCCAACGTAGG 60431 ||| ||||| ||||| || |||||||| || || || ||||| || || || | | | || Sbjct 70718 CGATGGTGTTGACATTGATTGGGAGTTCCCTGGTGGTAAAGGCGCTAACCCTACCTTTGG 70777 Query 60432 CGACGCCGAACGCGATCGCGAAACGTACACCATTCTGTTGAAAGATTTACGCGAGGCGCT 60491 | | ||| || | || ||| || || |||| || | || || ||| Sbjct 70778 AAGCCCAGAA---GACGGTGATGTTTACGTCAACCTCATGAAGGAACTCCGTGAAATGCT 70834 Query 60492 AGATCGA---TTAACCCTCGAAACGAATCGAACGTACGAGTTGACCAGCGCAATTAGCGC 60548 || ||| || | ||| ||| | | | ||||| ||||| || || ||||| Sbjct 70835 TGA-CGAACTTTCTCACTC--AACTGGTAGGAAATACGAATTGACATCAGCTATCAGCGC 70891 Query 60549 CGGCGATGACAAAATCGCCGTCGTCGACTACACCGCTGCTCAAGAATATTTAGATTTAAt 60608 || ||||||||| || || ||||||| | || ||| | || | || || Sbjct 70892 TGGTTGGGACAAAATCCAGGTAGTTGACTACAGCAAAGCCCAAAACTACATGGACCACAT 70951 Query 60609 ttttttGATGACGTACGATTTTAAAGGAGCCTGGTCGAATAACGATCTGGGCTATCAGAC 60668 ||| |||||| || || || || ||||| ||||| || || |||||| | ||||| Sbjct 70952 TTTCCTGATGAGTTATGACTTCAAGGGAGCTTGGTCTAACGACACTCTGGGGCACCAGAC 71011 Query 60669 TACTCTATACGCTCCTTCGTTTAATCCTAAAGAACATTATACTACCGATTTTGCCGTTCG 60728 || |||||||||| | |||||||||||| ||||||||||||||||| || | Sbjct 71012 ACCTTTATACGCTCCAGAATGGAATCCTAAAGAAACTTATACTACCGATTTTG--GT--G 71067 Query 60729 TGCTCTACT--CAAGCAAAAAGTCGAGAA---TaaaaaaaTTATTGTCGGCGTGGCCATG 60783 | |||| ||| || || | ||| || || || || ||||| ||||| ||| Sbjct 71068 TAAAATACTTGTTAGCTCAAGGT-GTGAACCCGAAGAAGATCATCGTCGGAGTGGCAATG 71126 Query 60784 TACGGTCGCGGCTGGACCGGCGTAAGCGATTTTGTTGACGATAATAATCCATTTTCCGGA 60843 ||||| || |||||||| ||||| || | || || || ||||| || | || Sbjct 71127 TACGGACGTGGCTGGACTGGCGTCCACGGGT---ACGAGGACAACAATCCCTTCACTGGC 71183 Query 60844 ACGGCCAAGGGACCGGTCAAAGGAACATGGGAAGACGGAGTCGTCGACTATAGAGAGATT 60903 | || | ||||| ||||| ||||| ||| ||||||| || ||||| || ||||| || Sbjct 71184 AACGCAACAGGACCAGTCAAGGGAACCTGGCAAGACGGTGTAGTCGATTACAGAGAAATA 71243 Query 60904 TTCAA--TAATTTCGTCGCCAATAACCCGATGGAAT---ATTACGATTCCGTTGCAAAAG 60958 || |||| | | || | ||||| |||||||| ||| ||| ||| Sbjct 71244 GCGAACGAAATTGCCCAGGGAAAA-----TGGGAATTCCATTACGATAACGTAGCACAAG 71298 Query 60959 CGGCGTACGTCTTTAATAACTCGACCGGCGAGCTCATCACTTACGACAATCCTCGGTCGG 61018 | | ||||| || | || || || || || | ||||||||||| || | || | Sbjct 71299 CACCATACGTGTTCAGACCGTCCACTGGGGACCTTGTAACTTACGACAACGCTAGATCCG 71358 Query 61019 TTCTGGATAAAGCAAAATATGTATTGGACTATAGCTTGGGTGGTTTGTTCGCTTGGGAGA 61078 | | || |||| ||||| || | ||| | || ||| | ||||| ||||| | Sbjct 71359 TCATCGAAAAAGGCAAATACGTGAGAAATAATAAACTCGGCGGTCTATTCGCCTGGGAAA 71418 Query 61079 TCGACGCCGACAACGGATTACTTCTAAACGCCATGAACA 61117 | ||||| || |||||| || || ||||| ||||||| Sbjct 71419 TAGACGCTGATAACGGAGATCTACTCAACGCAATGAACA 71457 >seq538 Length=46986 Score = 194 bits (214), Expect = 1e-44 Identities = 918/1433 (64%), Gaps = 63/1433 (4%) Strand=Plus/Plus Query 136639 ACGGTGAATTGGATTGTATTCGCGGCAGGTTTAGTTCTCAGATAGTACATGCCCGTCTTT 136698 || || ||||| || | ||| || || |||||||| | | ||||||||| || || || Sbjct 41447 ACAGTAAATTGAATAGCATTAGCAGCTGGTTTAGTACGTAAATAGTACATTCCAGTTTTC 41506 Query 136699 AAACCCTTCTCCCAGGAATAATTATGTATAGATGACAAAATTTTATAGCTCGGATCGGCC 136758 || ||| ||| ||| | ||| ||||||||||| || || ||| | || || || Sbjct 41507 AATCCCATCTTCCAAGCATAGAAATGTATAGATGTTAATTTTCCATAATTTGGTTCAGCT 41566 Query 136759 ACGAAAAGATTTAGCGATTGGCTCTGATCGATGTAAGGTCCGCGGTCTGCGGCCATGTTC 136818 || || ||| | || || |||||||| || | | ||| | ||||| ||||| || Sbjct 41567 ACATGAATATTAAATGACTGACTCTGATCAATAAACGCTCCTCTATCTGCAGCCAT-TTG 41625 Query 136819 AATAGTACTTTTTGCT-TAATTTCCCAAGCGGTTTTAAAGAGCTCCTTGACATTGGGCGG 136877 ||||| |||| || |||||||||| | || || | | ||| | | || || Sbjct 41626 TATAGTTGTTTTCACTGAAATTTCCCAAACTGTCTTGTATAAGTCCCTTATTTTTTTTGG 41685 Query 136878 AATTTCATCGATATTCTGTACAGATCCGTTGTTTTTGATGA------TTTTCA-----TC 136926 ||| | || ||||| |||| |||||| ||||| | || | |||||| || Sbjct 41686 AATCTTTTCAATATTTTGTATAGATCCATTGTTGTGAATTATCAAATTTTTCATATCTTC 41745 Query 136927 ATGAGATCAGTCGAGTATACGTTGCTCTCTATGAGTTTATCGACGAGATGCTGATTTACT 136986 || || |||| | ||| | || ||| | |||||| || || || Sbjct 41746 ATCCCATAAGTC------AGCTTGGGTTAAATCTGTT-----AAGAGATGATGGTTAACA 41794 Query 136987 ACTTGATATTCGCCCGATAGCACTCTGCGTACGTACAGATTACTAGTGAACGGCTCGAAC 137046 |||||| | || || |||| || | |||| ||| | || ||| || || || || Sbjct 41795 ACTTGAAACTCACCAGATAATACCCGGCGTTGGTAAATGTTTGAAGTAAATGGTTCAAAA 41854 Query 137047 GATTCGTTGTTACCCAAAATCTGTGCAGTCGTCGCTGTCGGCATGTAAGCGATCAACAAT 137106 ||||| || || || | |||||||| || | || || ||||| ||| | ||| | Sbjct 41855 GATTCATTATTTCCAAGTATCTGTGCTGTGGAAGCAGTTGGCATTGGAGCTAACAAAAGG 41914 Query 137107 GAATTCCGTAAACCGTGTACGGCCAATTGTTGCTTGAGCTCTTTCCAGTTCCACAGATTG 137166 ||||| || | ||| || | ||||| || || | | |||| | |||||||| Sbjct 41915 GAATTACGAAGACCATGCTTTG-CAATTTTTCTTTTAAGGCAGTCCAATCCCACAGATCA 41973 Query 137167 TTCGATTGGGTTATATTCCACAAATCAAACTGCAAAAGTCCGCGACTTGCAGGACTTTCT 137226 | | | || | | ||||| ||| | || |||| || |||||||||||||| | Sbjct 41974 GTAG---GAGTCTTGTCCCACATGTCATATTGTAAAATGCCTTGACTTGCAGGACTTCCA 42030 Query 137227 GCATAAGAATCATATGTTCCGTGCAGTTTCGCCAGTTCAATACTCTGGACTAGTGCGCCA 137286 ||||| | || || | | | |||| |||| ||| ||| || ||| Sbjct 42031 TCATAACTAGAGTAAACACCTTCCTTCTCTGCCAATTCACAACTAGCTTCTAAAGCTCCA 42090 Query 137287 TAGTAAATAGTTTCGGAGATTTTTCTATTCAATTCTCTAGCTTCTTGGCTGTCGTAGGGC 137346 ||||| |||||||| | |||| | ||| | | | ||||||| || || ||||| Sbjct 42091 TAGTATATAGTTTCAAATATTTGTTGATTAAGTAAAATTGCTTCTTCACTCTCATAGGG- 42149 Query 137347 ATATC-CAATATAGCGAAAGCATCTGCAAGTCCTTGAATACCGATACCGATAGGTCTGTG 137405 | ||| || || | || |||||||| | ||| |||| |||||| || ||||| || || Sbjct 42150 AAATCTCATTAACACAAATGCATCTGCTAATCCCTGAACACCGATGCCAATAGGCCTATG 42209 Query 137406 TTTAAAATTTGATATTTGAGC-GCTAACAAGCGGATAAAAGTTTGCGTCTATAATTCTAT 137464 ||| | ||| || | | || || | | ||||| ||||| | || ||||| ||| Sbjct 42210 TTTCATATTCGAATTCTTTGCTTCTGGC-ACTGGATAGAAGTTAACATCAATAATCTTAT 42268 Query 137465 TGAGATTGTTAGTAACGACTCTGGACACTTTGTAGAGCAATTCGAAATCGAAGCTTTTAG 137524 | | ||| | ||||| | | | || | | | || |||| || ||||| Sbjct 42269 TTAAATTTTGTGTAACAGTTTTAGTAACCTGTTTTAATTTTTGAAAATTAAAAGTTTTA- 42327 Query 137525 ACTGTTTGTTAGCAAAATTATTGACGGCAATAGAGGCTAAGTTGCATACGGCCGTTTCTG 137584 || | | |||| |||| || || || || ||||| ||||| || ||| ||| Sbjct 42328 -----TTTTCAACAAACATATTAACAGCTATGGACGCTAAATTGCACACTGCCACTTCAT 42382 Query 137585 TATTGTCGCTGTAT--TGTACAATTTCGGCGCAAAGATTGCTGTTTCGGATCACTCCCAA 137642 | | | ||||| | |||||||| | |||||| |||||| | || | | |||| Sbjct 42383 CA--GGTGATGTATACTCAACAATTTCTGTGCAAAGGTTGCTGCATTTTAT-AGTGCCAA 42439 Query 137643 -ATTCTTTTGATT-GTTTTTCTCGTTGACGTGATCTTTATATATCATATACGGAGTTCCG 137700 ||| |||||||| ||||||| |||| ||||||||| | |||||| || ||||| Sbjct 42440 GATTTTTTTGATTACTTTTTCT-GTTGCAAGAATCTTTATACAACATATATGGTGTTCCT 42498 Query 137701 GTTTCGACTTGAGTCTCAACAATTTTTCTGTGAAGATCCAACGCCATAATTTGTTCTCTA 137760 ||||| ||||| | || | ||| | | | | || || || ||||| | | Sbjct 42499 GTTTCAACTTGTGCTTCTATTATTGCTTTCCACAAAACCTGTGCACGAACTTGTTTTACA 42558 Query 137761 AA---CTTGCCTTGAGCTTCAAAACTTTCGTATAGCCGTTTAAATTTTTCGCCCATAACA 137817 | || |||| |||| | |||| |||| || ||||| ||| ||| |||| Sbjct 42559 TAGCGTTTTTCTTG---TTCATACTTTTCATATAAAGCTTCAAATTCTTCACCC-CAACA 42614 Query 137818 ATC-GTTAGACCCGGACACTCGTCGGGACACATCA-ACGACCATTTTCCTCCCGTCCTAA 137875 ||| | | || || || | || |||||||| | || | |||||| | | || | Sbjct 42615 ATCAGCCAATCCAGGGCAGTTGTGAGGACACATAAGACTCCAATTTTCATTTTTTTCT-A 42673 Query 137876 CCCTTTCCATGAACAGAGAAGGCGTCCATATAGCAAAAAGAAGGTCGCGAGCCTTCATA- 137934 ||| || ||| |||| | || |||||| |||| | | | || | || || || Sbjct 42674 CCCGTTTCATAAACAAATCTGGTATCCATAAAGCATAGAATAATTCTCTTGC--TCGTAC 42731 Query 137935 -TCTTCGGCGCCCATATTGCGTTTTAAATCCaaaaaagtaaaaaTATCAGCATGCCAAGG 137993 ||||| || |||| ||||||||| ||||| ||| | ||| || |||||||| Sbjct 42732 TTCTTCTTTACCAGTATTCTTTTTTAAATCTAAAAATTCAAAGACATCTGCGTGCCAAGG 42791 Query 137994 CTCGATATAGACGGCCATAGCTCC---TTTTCTTTTACCGCCTTGATCCACAT 138043 || | ||| || || | ||||| | | ||||| ||||||||||||| Sbjct 42792 TTCCAAATACACTGCAAATGCTCCAGGGCGTTTGTTACCCCCTTGATCCACAT 42844 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 445048438439520