Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Melitaea_20cinxia_20[genbank_20GCA_5F000716385.1_202014-07-09] 8,261 sequences; 389,907,520 total letters Query= NC_026430.1 Length=125767 Score E Sequences producing significant alignments: (Bits) Value seq2668 113 4e-20 seq5066 82.4 6e-11 >seq2668 Length=134947 Score = 113 bits (124), Expect = 4e-20 Identities = 178/253 (70%), Gaps = 4/253 (2%) Strand=Plus/Minus Query 99851 ATGTCCGGCCCCGTGCACCCTAAATACGGCACTAAATCTGCACGTTTAGAAACTTTTGTG 99910 ||| ||||||| || |||||| || | | | | || || ||| || ||| | Sbjct 31188 ATGCCCGGCCCAGTACACCCTCGGTATGCTTCAGAGGCCGCTCGATTACGCACCTTTAAG 31129 Query 99911 GATTGGCCGCTCAGTTTGAAACAAAAACCAGAGCAATTGGCCGAAGCCGGTTTTTATTAC 99970 |||||||| | |||| ||||||||||||| ||| || | |||||||| || |||| || Sbjct 31128 GATTGGCCCCGCAGTATGAAACAAAAACCCGAGGAACTTGCCGAAGCTGGCTTTTTCTAT 31069 Query 99971 ACCGGCAAAGGTGACA--AAGTTAAATGTTTTCATTGCGACGGCGGCCTCAAAGACTGGG 100028 ||||| || || || | | ||| || ||| |||| ||||| || || | || |||| Sbjct 31068 ACCGGTAACGGAGATAAGACGTT--GTGCTTTTATTGTGACGGGGGTCTTAGGGATTGGG 31011 Query 100029 AAAGCACCGACGAGCCGTGGCATGAACACGCACGTTGGTTTGATCGCTGCACATACGTGC 100088 | | | ||| | |||||| | |||| || |||||||| ||||||||| | || || | Sbjct 31010 AGAACGACGATGTACCGTGGGAGCAACATGCTCGTTGGTTCGATCGCTGCGCCTATGTAC 30951 Query 100089 GGCTTGTAAAGGG 100101 || ||||| || Sbjct 30950 AACTCGTAAAAGG 30938 Score = 87.8 bits (96), Expect = 1e-12 Identities = 96/128 (75%), Gaps = 0/128 (0%) Strand=Plus/Minus Query 99638 AACGGGTTTTATTATTTGGGGCGCGCGGACGAAGTGCGCTGCGCGTTTTGCAAAGTTGAA 99697 ||||| ||||||||| | || || | ||||| ||| | |||||||| || || || ||| Sbjct 31422 AACGGATTTTATTATCTCGGACGAGGAGACGAGGTGAGATGCGCGTTCTGTAAGGTGGAA 31363 Query 99698 ATAATGCGCTGGTTGGAGGGCGACGACCCGGCTGCAGATCATAAACGATGGGCGCCGCAA 99757 || ||| ||| |||| || ||||| || || ||| ||| | |||||||||||||| Sbjct 31362 ATCATGAAGTGGGTGGAAGGTGACGATCCTGCGAAAGACCATCAGCGATGGGCGCCGCAG 31303 Query 99758 TGCCCGTT 99765 || || || Sbjct 31302 TGTCCTTT 31295 >seq5066 Length=19128 Score = 82.4 bits (90), Expect = 6e-11 Identities = 152/222 (68%), Gaps = 1/222 (0%) Strand=Plus/Plus Query 106243 TTTATAAGAGTTTAAAA-ATGCAAATTTTTGTTAAAACATTGACTGGCAAGACCATTACC 106301 ||||| | ||||| || ||||| ||||| || || || | || || ||||| ||||| Sbjct 18605 TTTATTACAGTTTTCAAGATGCAGATTTTCGTGAAGACTCTCACGGGTAAGACTATTACT 18664 Query 106302 GTGGAAACAGAACCCGGCGATTCTGTTGGCCAAGTGAAACAAAAAATTGCCGACAAAGAA 106361 | ||| ||||| |||| | | | | || ||| || ||| ||||||||| Sbjct 18665 TTAGAAGTTGAACCATCCGATACCATCGAAAACGTTAAAGCGAAGATTCAAGACAAAGAA 18724 Query 106362 GGCGTGCCCGTTGATCAACAAAGGCTTATTTATGCGGGCAAACAATTAGAAGATTCTAAA 106421 ||| | ||| ||||| ||| | | |||| ||| || || || | |||||| | | Sbjct 18725 GGCATTCCCCCAGATCAGCAACGTTTGATTTTTGCTGGAAAGCAGCTTGAAGATGGTCGA 18784 Query 106422 ACTATGGGCGATTACAACATACAAAAAGAATCTACACTACAT 106463 || | |||||| ||||| |||||||||||||| ||||| Sbjct 18785 ACCTTATCCGATTATAACATTCAAAAAGAATCTACCTTACAT 18826 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 402289093078688