Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Melitaea_20cinxia_20[genbank_20GCA_5F000716385.1_202014-07-09] 8,261 sequences; 389,907,520 total letters Query= NC_026922.1 Length=157977 Score E Sequences producing significant alignments: (Bits) Value seq538 150 2e-31 seq566 147 2e-30 seq5066 145 8e-30 >seq538 Length=46986 Score = 150 bits (166), Expect = 2e-31 Identities = 690/1076 (64%), Gaps = 29/1076 (3%) Strand=Plus/Minus Query 8254 GAAACCGGTATGCCGTACATGCTGTACAAAGACGCTTGCAACGCCAAAAGCAATCAAAGC 8313 ||||| || | || || ||| |||| ||||| |||||||| ||||| ||||||| Sbjct 42503 GAAACAGGAACACCATATATGTTGTATAAAGATTCTTGCAACAGAAAAAGTAATCAAAAA 42444 Query 8314 AACGTGGGCACCATTTGTTGCAGCAATCTGTGCGCTGAAATTGTACAGTACAGCGCGCCC 8373 || | ||||| || |||||||| || ||| | |||||||| |||| | | || Sbjct 42443 AATCTTGGCACTATAAAATGCAGCAACCTTTGCACAGAAATTGTTGAGTATACATCACCT 42384 Query 8374 GACGAAGTGGCCGTTTGCAATCTAGCGTCGGTGTGTTTAAACGCGTTCGTTGATCGACGC 8433 || |||||||| || |||||| ||||||| | | | || ||| ||||| Sbjct 42383 GATGAAGTGGCAGTGTGCAATTTAGCGTCCATAGCTGTTAATATGTTTGTTGAAAA---- 42328 Query 8434 TCAAACACTTACGACTTTGAACAATTGAAAAACGCCGTGCAAGTGACGGTACGCAA--TT 8491 | |||| ||| | ||| || |||| ||| | | | | | | ||| ||| || Sbjct 42327 TAAAACTTTTA--ATTTTCAAAAATTAAAACAGGT--TACTAAAACTGTTACACAAAATT 42272 Query 8492 TAGATCGCATCATTGATGTCAATTTTTATCCCTTGGAAGAAGCGCGCGTATCGAACATGC 8551 || || || |||||||| || || ||||| || |||||| ||||| ||| Sbjct 42271 TAAATAAGATTATTGATGTTAACTTCTATCCAGTGCCAGAAGCAAAGAATTCGAATATGA 42212 Query 8552 GCCACAGACCCGTTGGCGTGGGCGTGCAAGGTCTGGCCGACGCGTTTGCCATGTTGCGCC 8611 || || || ||||| | || || || || | || || || |||| | || | Sbjct 42211 AACATAGGCCTATTGGCATCGGTGTTCAGGGATTAGCAGATGCATTTGTGTTAATGAGAT 42152 Query 8612 TCCCCTACGAAAGCCAAGAAGCGCGCATGCTCAACATAAAAATAGCGGAAACGGTGTATT 8671 | ||||| || || ||||||| | || || | ||||| ||||| | || | Sbjct 42151 TTCCCTATGAGAGTGAAGAAGCAATTTTACTTAATCAACAAATATTTGAAACTATATACT 42092 Query 8672 ACGGCGCATTAGAAGCCAGCTGTCAACTTGCCCGAGAATTGGGCACGTACGAA---TCGT 8728 | || || |||||||| || ||| || ||| | ||||| || | || | | || Sbjct 42091 ATGGAGCTTTAGAAGCTAGTTGTGAA-TTGGCAGAGAA---GGAAGGTGTTTACTCTAGT 42036 Query 8729 -ACGCGGGCAGCCCTGCCAGCCGCGGAATATTGCAATACGACATGTGGAATGTCACGCCC 8787 | | || || ||||| || | || || || ||||| ||||||||| | || || Sbjct 42035 TATGATGGAAGTCCTGCAAGTCAAGGCATTTTACAATATGACATGTGGGACAAGACTCCT 41976 Query 8788 ACCTCTTTGTGGAATTGGAGCGATTTGAAACGCAAAATTGCTCAATTCGGTTTGCGCAAT 8847 || | ||||| |||||| | || ||| | |||||||| | ||| | || ||| Sbjct 41975 ACTGATCTGTGGGATTGGACTGCCTTAAAA-GAAAAATTGCAAAGCATGGTCTTCGTAAT 41917 Query 8848 TCGCTGTTGGTGGCTTACATGCCCACCGCCACGACTGCTCAAATAATGGGAAACAACGAA 8907 || || ||| | ||| ||||| || || | || || || ||| | ||||| || ||| Sbjct 41916 TCCCTTTTGTTAGCTCCAATGCCAACTGCTTCCACAGCACAGATACTTGGAAATAATGAA 41857 Query 8908 TCCTTTGAGCCGTTCACCAACAACGTGTACGTGAGACGAGTGTTGGCCGGCGATTTTTTA 8967 || ||||| || || || ||| | ||| | || || || | || || ||| | Sbjct 41856 TCTTTTGAACCATTTACTTCAAACATTTACCAACGCCGGGTATTATCTGGTGAGTTTCAA 41797 Query 8968 ATGCTGAATCGTCATTTGATGCGCGACTTGATCGAAGCGGGCGTTTACGACGACAAAATG 9027 | | || | |||| | | || || | | |||| | | | | || || | ||| Sbjct 41796 GTTGTTAACCATCATCTCTTAACAGATTTAACCCAAGCTGACTTATGGGATGAAGATATG 41737 Query 9028 CGCGATGCCATCGTGGAAGCCAACGGCAGCGTTCAGAACATTGACGCGGTGCCTCAACAC 9087 || || | | ||| || | || || ||||| | | || || | Sbjct 41736 AAAAATTTGATAATTCACAACAATGGATCTATACAAAATATTGAAAAGATTCCAAAAAAA 41677 Query 9088 ATTAAAGAGCTGTATAAAACCGTTTGGGAAATGA-AGC-AAAGCACGCTGATCGGCATGG 9145 || | || | || || || ||||||||||| || ||| || || || |||| Sbjct 41676 ATAAGGGACTTATACAAGACAGTTTGGGAAATTTCAGTGAAAACAA-CT-ATACAAATGG 41619 Query 9146 CTGCGGATAGAGGCGCTTTTATTGATCAGAGTCAATCTTTTAACGTGTTC--GTAGCCGC 9203 |||| |||||||| || ||||||||||||||||| || ||||| | ||| ||||| | Sbjct 41618 CTGCAGATAGAGGAGCGTTTATTGATCAGAGTCAGTCATTTAA--TATTCATGTAGCTGA 41561 Query 9204 ACCAACTTACGCTTTGATGTCCAGC-ATTCATTATTTAACTTGGAAAATGGGTTTAAAAA 9262 ||||| ||| | || || | || |||| | ||||||| ||||| || |||| Sbjct 41560 ACCAAATTATGGAAA-ATTAACATCTATACATTTCTATGCTTGGAAGATGGGATTGAAAA 41502 Query 9263 CAGGCATGTACTATTTGCGCACAAAACCCGCCGCTGAACCTATCAAATTTACAGTT 9318 | || ||||||||||| || || ||||| || ||| | |||| ||||||| ||| Sbjct 41501 CTGGAATGTACTATTTACGTACTAAACCAGCTGCTAATGCTATTCAATTTACTGTT 41446 >seq566 Length=99533 Score = 147 bits (162), Expect = 2e-30 Identities = 342/510 (67%), Gaps = 12/510 (2%) Strand=Plus/Plus Query 104556 TGCAAACGTGGTGGCGGCCTATTTTGTAGAGTGGGGTGTGTATCAACGCGCGTTTGCCGC 104615 || ||| || || | || |||||||| || ||||| || || | | ||| ||| Sbjct 70265 TGGAAAAGTAGTTGGCGCTTATTTTGTGGAATGGGGCGTTTACCCGAGGAAGTTCCCCGT 70324 Query 104616 C-AGCGACGTGCCCGCGCCCAATCTGTCGCACATGCTTTACGGATTTATACCGATTTGCG 104674 | | || ||| || |||||||| | ||| | || || || ||||| || ||||| | Sbjct 70325 CGATCG-CGTACCAATTCCCAATCTAACTCACCTTCTGTATGGTTTTATTCCAATTTGTG 70383 Query 104675 GTGGCGACGGCATCAACGACGCTCTAAAGACCGTTCCGGGTAGTTTTGAAGCGTTGCAAA 104734 |||| || ||||| |||||| | ||||| | || ||||| |||| | ||| Sbjct 70384 GTGGAGATGGCATTAACGACAGTTTAAAGGAAATCGAAGGAAGTTTCCAAGCACTTCAAC 70443 Query 104735 AATCGTGCGCTGGACGGGAAAACTTCAAAGTGGCCATTCACGATCCGTGGGCGGCGGTGC 104794 || ||| ||| || || |||| ||||| | ||||||||||| ||||| || | | Sbjct 70444 GTTCTTGCAGTGGTCGCGAGGACTTTAAAGTATCTATTCACGATCCCTGGGCAGCCTTAC 70503 Query 104795 AAAAACCGCAAAAAGGTGCCTCCGCTTGGAACGAACCGTACAAAGGCAATTTTGGTCAGA 104854 | ||||| || |||||| || ||||||| ||||| ||||||||||| || ||||| Sbjct 70504 AGAAACCTCAGAAAGGTCTATCATCTTGGAATGAACCATACAAAGGCAACTTCGGTCAAC 70563 Query 104855 TAATGGCCATCAAAAAAGCCAATCCTCAATTGCGCGTATTGCCCTCGGTGGGCGGGTGGA 104914 | ||| | | ||| |||| | ||| | || | | || || | || || |||| Sbjct 70564 TGATGTCATTGAAACAAGCGAGACCTGACCTGAAGATTCTTCCTTCTATTGGAGGATGGA 70623 Query 104915 C----GCTG-TCCGATCCTTTTTATCACATGCACGACGCTGAAAAACGTGCCACGTTTGT 104969 | |||| |||| || | ||| | || || ||| | | ||| || || || Sbjct 70624 CATTGGCTGATCCGTTCTTCTTTTTTACTGACAAGAC-CAAGAGAACTCGC----TTCGT 70678 Query 104970 GGAGTCGGTGCGCGAATTTTTGTTGACTTGGAAATTCTTCGATGGCGTCGACATCGATTG 105029 || || || || || | || |||||||| |||||||| || ||||| ||||| Sbjct 70679 TGACTCAGTCAAAGAGTTCCTTCAAACCTGGAAATTTTTCGATGGTGTTGACATTGATTG 70738 Query 105030 GGAGTTTCCGGGCGGCAAAGGCGCCAACCC 105059 |||||| || || || |||||||| ||||| Sbjct 70739 GGAGTTCCCTGGTGGTAAAGGCGCTAACCC 70768 >seq5066 Length=19128 Score = 145 bits (160), Expect = 8e-30 Identities = 169/228 (74%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 134487 CCTCCTCTGAGTCGCAACACGAGGTGTAGCGTGGATTCCTTTTGAATGTTGTAGTCGCCA 134546 || || | ||| || | || | ||| || || || ||||||||||| || ||||| Sbjct 19077 CCACCACGGAGACGAAGTACCAAGTGAAGTGTAGACTCCTTTTGAATATTATAGTCTGAT 19018 Query 134547 ACGGTGTGAGAGTCGTCGAGCTGTTTGCCTGCAAAAATCAAACGCTGCTGATCGGGCGGT 134606 | || || ||| || || || ||||| ||||| ||||||||||| ||||| || || Sbjct 19017 AGTGTACGACCGTCTTCAAGTTGCTTGCCAGCAAAGATCAAACGCTGTTGATCTGGGGGA 18958 Query 134607 ATGCCTTCTTTTTCTTGAATTTTTTGTTTGACCGCGTCCAATGTGTCGGACGATTCCACG 134666 ||||||||||| |||||||| ||| |||||| || | || || || | ||| || Sbjct 18957 ATGCCTTCTTTGTCTTGAATCTTTGCTTTGACATTCTCGATAGTATCCGAAGGTTCAACT 18898 Query 134667 TCGAGAGTAATGGTTTTACCGGTTAAAGTTTTAACGAAAATTTGCATT 134714 ||||| || || |||||||| || | ||||||||||||||| |||||| Sbjct 18897 TCGAGCGTTATAGTTTTACCTGTAAGAGTTTTAACGAAAATCTGCATT 18850 Score = 136 bits (150), Expect = 4e-27 Identities = 158/213 (74%), Gaps = 0/213 (0%) Strand=Plus/Minus Query 134505 ACGAGGTGTAGCGTGGATTCCTTTTGAATGTTGTAGTCGCCAACGGTGTGAGAGTCGTCG 134564 || || |||| || ||||| ||||||||||| || ||| | ||| || || || Sbjct 18831 ACCAGATGTAAGGTAGATTCTTTTTGAATGTTATAATCGGATAAGGTTCGACCATCTTCA 18772 Query 134565 AGCTGTTTGCCTGCAAAAATCAAACGCTGCTGATCGGGCGGTATGCCTTCTTTTTCTTGA 134624 ||||| || || |||||||||||||| |||||||| || || ||||||||||| |||||| Sbjct 18771 AGCTGCTTTCCAGCAAAAATCAAACGTTGCTGATCTGGGGGAATGCCTTCTTTGTCTTGA 18712 Query 134625 ATTTTTTGTTTGACCGCGTCCAATGTGTCGGACGATTCCACGTCGAGAGTAATGGTTTTA 134684 || || ||| || || | || ||||| | ||| || || | |||||| || ||| Sbjct 18711 ATCTTCGCTTTAACGTTTTCGATGGTATCGGATGGTTCAACTTCTAAAGTAATAGTCTTA 18652 Query 134685 CCGGTTAAAGTTTTAACGAAAATTTGCATTTTG 134717 || || | ||| || |||||||| ||||| ||| Sbjct 18651 CCCGTGAGAGTCTTCACGAAAATCTGCATCTTG 18619 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 505346211297720