Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Melitaea_20cinxia_20[genbank_20GCA_5F000716385.1_202014-07-09] 8,261 sequences; 389,907,520 total letters Query= NC_027213.1 Length=214699 Score E Sequences producing significant alignments: (Bits) Value seq538 684 0.0 seq1957 113 6e-20 >seq538 Length=46986 Score = 684 bits (758), Expect = 0.0 Identities = 1238/1788 (69%), Gaps = 32/1788 (2%) Strand=Plus/Plus Query 68358 TTTATCCTTATCCAATGTAAACTGAATGGG-TGAGGATGCGGGTTTTGTACGTAGATAGT 68416 |||| |||||| | ||||| ||||| | | || | || ||||| ||||||| ||||| Sbjct 41434 TTTAGTCTTATCAACAGTAAATTGAATAGCATTAGCA-GCTGGTTTAGTACGTAAATAGT 41492 Query 68417 ACATACCGGTTTTCAGACCTAGACTCCATCCGTAGAAATGCATACTTGTTAGTTTGGAAT 68476 |||| || ||||||| || | |||| | |||||||| ||| ||||| ||| || Sbjct 41493 ACATTCCAGTTTTCAATCCCATCTTCCAAGCATAGAAATGTATAGATGTTAATTTTCCAT 41552 Query 68477 AACTTGGATCGGCTATATGAATATTCATCGATTGACTTTGATCGATGAAAGCTCCTCTAT 68536 || |||| || |||| ||||||||| | || ||||| ||||| || || |||||||||| Sbjct 41553 AATTTGGTTCAGCTACATGAATATTAAATGACTGACTCTGATCAATAAACGCTCCTCTAT 41612 Query 68537 CTGCCGCCATTTTTATAATACTCTTTTGA--GGAATTTCCCAAATAGTCTT--AAAAATC 68592 |||| ||||||| |||| | | |||| | | ||||||||||| ||||| | || || Sbjct 41613 CTGCAGCCATTTGTATAGT--TGTTTTCACTGAAATTTCCCAAACTGTCTTGTATAAGTC 41670 Query 68593 TGTTTGATATCATCTGGAAGGCTCG---TATTTTGAATGGATCCACCATCGGATATAATT 68649 || || | | ||||| | ||||||| || |||||| | | || || Sbjct 41671 CCTT--ATTTTTTTTGGAATCTTTTCAATATTTTGTATAGATCCATTGTTGTGAATTATC 41728 Query 68650 ATATTCTTGATCTCATCATTCCACAATTTTCTCTCCGTTAAAACTCTAAGGAGATGCGGA 68709 | ||| || || || |||| ||| || | | |||||| || | | |||||| | Sbjct 41729 AAATTTTTCATATCTTCATCCCATAAGTCAGCTTGGGTTAAATCTGTTAAGAGATGATGG 41788 Query 68710 TTAACTATTTGAAATTCCCCAGATAACACTCTACGAGTGTAAATATTACTGGTATATGGT 68769 ||||| | |||||| || |||||||| || | || |||||| || ||| ||||| Sbjct 41789 TTAACAACTTGAAACTCACCAGATAATACCCGGCGTTGGTAAATGTTTGAAGTAAATGGT 41848 Query 68770 TCCACAGATTCATTATTTCCCAGAATTTGAGCAGTTGATGCAGTTGGCATAGGTGCCACC 68829 || | ||||||||||||||| || || || || || || ||||||||||| || || | | Sbjct 41849 TCAAAAGATTCATTATTTCCAAGTATCTGTGCTGTGGAAGCAGTTGGCATTGGAGCTAAC 41908 Query 68830 AATAAACTATTTCTAAGACCATGTGTTATGATTTTATCTTTTAGATGTTTCCAATCCCAA 68889 || | ||| | ||||||||| || ||||| ||||||| |||||||||| Sbjct 41909 AAAAGGGAATTACGAAGACCATGCTTTGCAATTTT-TCTTTTAAGGCAGTCCAATCCCAC 41967 Query 68890 AGATCAGATGGTACAACATTCCAAAGATCGTATTGTAGAATTCCGTTACTTGCATATGAT 68949 ||||||| || | ||| | || ||||||| ||| || | ||||||| | Sbjct 41968 AGATCAGTAGGAGTCTTGTCCCACATGTCATATTGTAAAATGCCTTGACTTGCAGGACTT 42027 Query 68950 CCATTATATGTTTCATAAGGTCCTTCCTGTTCAGCTAGTTCACAACTTGCCTCTAATGCA 69009 |||| ||| | ||| ||||||| || || | ||||||||| || ||||| || Sbjct 42028 CCATCATAACTAGAGTAAACACCTTCCTTCTCTGCCAATTCACAACTAGCTTCTAAAGCT 42087 Query 69010 CCGTAATAAATTGTTTCGAAAATCTTCTTATTGAGATCTTGTGCTTCTAGACTATCGAAT 69069 || || || || ||||| || || | | ||| || ||||||| ||| || | Sbjct 42088 CCATAGTATATAGTTTCAAATATTTGTTGATTAAGTAAAATTGCTTCTTCACTCTCATAG 42147 Query 69070 GGATAATGTAAAAGA-ATAAATGCATCTGCCAATCCCTGAACCCCAATACCGATAGGTCT 69128 ||| ||| | | | | |||||||||||| ||||||||||| || || || ||||| || Sbjct 42148 GGA-AATCTCATTAACACAAATGCATCTGCTAATCCCTGAACACCGATGCCAATAGGCCT 42206 Query 69129 ATGTCTCTTATTTGAACTTTCAGCTTCTGGAATAGGATAATAATTAATATCTATAATTTT 69188 |||| || |||| ||| | | |||||||| | ||||| | |||| ||| ||||| || Sbjct 42207 ATGTTTCATATTCGAATTCTTTGCTTCTGGCACTGGATAGAAGTTAACATCAATAATCTT 42266 Query 69189 ATTAAGATTTCGGACTACTACTTTAACCACGTCCTTTAGTTTGAGAAAATCAAATCGTCC 69248 ||| | |||| | || |||| || | |||| ||| |||||| ||| | Sbjct 42267 ATTTAAATTTTGTGTAACAGTTTTAGTAACCTGTTTTAATTTTTGAAAATTAAAAGTTTT 42326 Query 69249 ATCTATAACAAACATATTCAGTGCTACAGATGCTAGATTACAAACTGCTACCTCATTAGA 69308 || | |||||||||||| | |||| || |||| ||| || ||||| || |||| || Sbjct 42327 ATTTTCAACAAACATATTAACAGCTATGGACGCTAAATTGCACACTGCCACTTCATCAGG 42386 Query 69309 ATTTGCATATTGTATTATCTCTGTACATAGATTACTACATTTGATAGTCCCCAGATTTTG 69368 || ||| | | || ||||| || || || || ||||| ||||| || ||||||| Sbjct 42387 TGATGTATACTCAACAATTTCTGTGCAAAGGTTGCTGCATTTTATAGTGCCAAGATTTTT 42446 Query 69369 CTGATTACTCTTTTTGTTACAGGCGTCCTTGTAAAGAATAAACGGAGTACCAGTTTCAAT 69428 |||||||| ||| |||| || | || || || | ||| | || || || ||||||| Sbjct 42447 TTGATTACTTTTTCTGTTGCAAGAATCTTTATACAACATATATGGTGTTCCTGTTTCAAC 42506 Query 69429 CTGAGATTCGATAATAGATTTCCAAACGACCCTAGCATTTATTACGGTCTT--GTAACGC 69486 || | ||| || || | |||||| | ||| ||| | | || || || || Sbjct 42507 TTGTGCTTCTATTATTGCTTTCCACAAAACCTGTGCACGAACT--TGTTTTACATAGCGT 42564 Query 69487 TTCTCTTTTTCATATTGTGTATATAGCCGTTCGAATTCATCTCCCCAAACATCATCCAAT 69546 || |||| |||||| | | ||||| ||| ||||| || |||||| |||| ||||| Sbjct 42565 TTTTCTTGTTCATACTTTTCATATAAAGCTTCAAATTCTTCACCCCAACAATCAGCCAAT 42624 Query 69547 CCAGGACATTCATTTGGACACATCAATGACCACACATCATCATCCTT---AACTCGTTTC 69603 ||||| || | | |||||||| | ||| || || |||| || || |||||| Sbjct 42625 CCAGGGCAGTTGTGAGGACACAT--AAGACTCCA-ATTTTCATTTTTTTCTACCCGTTTC 42681 Query 69604 ATAAATAGATCGGGAATCCAAAGAGCTATA-AAGAGATCTCTGGTTCTATTTTCTTCATT 69662 ||||| | ||| || ||||| | ||| ||| || | ||||| | || |||||| || Sbjct 42682 ATAAACAAATCTGGTATCCATAAAGC-ATAGAATAATTCTCTTGCTCGTACTTCTTCTTT 42740 Query 69663 TCCTGTAttttttttAAGATCGAGAAACTCCATAATATCAGAATGCCATGGTTCTAGATA 69722 || ||||| ||||| | ||| | ||| || | | ||| | ||||| ||||| | ||| Sbjct 42741 ACCAGTATTCTTTTTTAAATCTAAAAATTCAAAGACATCTGCGTGCCAAGGTTCCAAATA 42800 Query 69723 TATCGCCATGACTCCCGGTCGTTTATTTCCTCCCTGATCTATGTATCTGGCAGTGTTATT 69782 | || | |||| || ||||| || || || ||||| | ||||||||||||||||| Sbjct 42801 CACTGCAAATGCTCCAGGGCGTTTGTTACCCCCTTGATCCACATATCTGGCAGTGTTATT 42860 Query 69783 ATAGACTCTCAGCATCGGAATAATACCATTAGATTTACCATTTGTTCCAGAAATATAACT 69842 ||||||||| | ||| |||| || |||||| || | |||||||| |||| ||||||| | Sbjct 42861 ATAGACTCTTAACATAGGAACAAGACCATTGGAAATCCCATTTGTACCAGCAATATAAGT 42920 Query 69843 TCCTCTTGCGCGAAT--ATTACTAATAGATAGACCTATTCCTCCTGCCATTTTAGAGATT 69900 |||| | || | || | | | || || | ||| || ||||| || || || ||| Sbjct 42921 TCCTTTAGCTCTTATGCAATGCACAT-GA-ACACCGATACCTCCAGCTGACTTGGAAATT 42978 Query 69901 AGAGCACAACGTTTCAATGTGTCATATATACCCTCTATGCTATCATCTATCATGTTAAGA 69960 | ||||| |||| | ||| |||||||| || || || || |||||| |||| | | Sbjct 42979 AATGCACATTGTTTTAGTGTATCATATATTCCTTCGATACTGTCATCTTTCATAGCTACA 43038 Query 69961 AGAAAACAGCTAGACATTTGATGATGTATAGTTCCCGCATTAAATAATGTAGGAGATGCG 70020 || ||||| ||||| |||| | | ||| | ||| ||| | ||| || ||| Sbjct 43039 AGGAAACAAGAAGACAATTGAGGTCTTGGAGTCGCAGCAGAAAACATTGTTGGGCTTGCA 43098 Query 70021 TGAGTGAACCATTTTTCAGAAAGCAGATTGTATGTTTCAATAGCTGATTCTATATCCCAC 70080 ||||| || |||||||||| | || |||||| || | ||||||| |||||||| | Sbjct 43099 TGAGTAAAATATTTTTCAGATAACAAATTGTAAGTGTTTATAGCTGCATCTATATCTTCC 43158 Query 70081 TGATGAATTCCTATCGCGACACGCATCAACATATGCTGAGGTCGTTCT 70128 || || || | || |||||||||| ||||||||| ||||||||| Sbjct 43159 CCGTGTATGCCAACAGCAACACGCATCAGCATATGCTGGGGTCGTTCT 43206 Score = 96.9 bits (106), Expect = 5e-15 Identities = 98/128 (77%), Gaps = 0/128 (0%) Strand=Plus/Plus Query 70345 TTTTTTGTTTCCTTGTGTAAATTTGATATGGCTATTCTGGCTGCTAGAATAGCATAGTCA 70404 ||||| ||||| || |||||||||||||| |||| ||| || |||||||| ||||||| Sbjct 44462 TTTTTGGTTTCTTTATGTAAATTTGATATTGCTAATCTAGCAGCTAGAATGCCATAGTCT 44521 Query 70405 GGATGTTGTGTAGTACAAGTAGCTGCTATTTCCGCAGCTAACGTATCTAATTCTATAGTT 70464 ||||| | || || |||||||| |||| || || || |||| | ||| | |||| Sbjct 44522 GGATGATCAGTTGTCATTGTAGCTGCAGTTTCAGCTGCCAAGTTATCCAGTTCGACAGTT 44581 Query 70465 GTAACTCC 70472 || ||||| Sbjct 44582 GTTACTCC 44589 Score = 84.2 bits (92), Expect = 3e-11 Identities = 91/121 (75%), Gaps = 0/121 (0%) Strand=Plus/Plus Query 70135 TTATTATTTATTTTCAACAGGTATGATTTTTCCAGAGTTTTAAACCCAAAATAGTTGTAT 70194 || || ||||||||||||| |||||| |||| ||||| || || |||||||| |||||| Sbjct 43750 TTGTTGTTTATTTTCAACAAATATGATCTTTCTAGAGTCTTGAATCCAAAATAATTGTAT 43809 Query 70195 GAAAAGTCTCTTTCGTAAATAATAACAGAATTTAGTTTATCCTTATATTTGGTAACTATA 70254 ||| || | || |||| ||| |||| | ||| | || |||| ||| |||| ||| Sbjct 43810 TTAAAATCACGATCATAAACAATCGCAGAGTCGAGTCTGTCTTTATGTTTCATAACAATA 43869 Query 70255 T 70255 | Sbjct 43870 T 43870 >seq1957 Length=467265 Score = 113 bits (124), Expect = 6e-20 Identities = 140/191 (73%), Gaps = 3/191 (2%) Strand=Plus/Minus Query 39668 AATGTGAGTCCAGGCATTAGACCACGCTTTTTGAGCCAAAATATGGCAGCAAAAGATCCA 39727 || || | ||| ||||| || || | ||| |||||||| ||||| | ||||| |||| Sbjct 419604 AAAGTCAATCCTGGCATAAGTCCCCTCTTCTTGAGCCAGAATATTGATGCAAAGCTTCCA 419545 Query 39728 GAAAAGAAGATGCCTTCTACTGCTGCAAATGCAACAAGTCTCTCTCCGTAACTTGTATCA 39787 || ||||| |||||||| ||||| ||||| || |||| | || ||| || ||| | Sbjct 419544 GAGAAGAATATGCCTTCAACTGCAGCAAAAGCTACAATACGTTCACCGAAAGTTGCAGTC 419485 Query 39788 TTATGT---ATCCACTTCTGTGCCCAATCAGCTTTCTTCTTTACACAAGGCATTGTTTCT 39844 || | ||||| | | ||||| ||||| |||||||||||||| || | ||| || Sbjct 419484 TTGCTTGCAATCCATTGCATAGCCCAGTCAGCCTTCTTCTTTACACAGGGTAATGTCTCA 419425 Query 39845 ATAGCATTAAA 39855 ||||||||||| Sbjct 419424 ATAGCATTAAA 419414 Score = 95.1 bits (104), Expect = 2e-14 Identities = 78/95 (82%), Gaps = 0/95 (0%) Strand=Plus/Minus Query 40103 TTTGATATATCTACTTCTTCAGCTGTCCAAAACGACGCCTCTGCCTTTTTGTACATGTTC 40162 || |||| ||| ||||||||| | |||||||| || |||||||| ||||||||||| | | Sbjct 418459 TTAGATAGATCAACTTCTTCAACAGTCCAAAAGGAGGCCTCTGCTTTTTTGTACATTTGC 418400 Query 40163 CATATATCACGATATTGTATTGGAAAAATAACAAA 40197 ||||||||| | || || || || || |||||||| Sbjct 418399 CATATATCAGGGTACTGGATGGGGAATATAACAAA 418365 Score = 87.8 bits (96), Expect = 2e-12 Identities = 118/164 (72%), Gaps = 3/164 (2%) Strand=Plus/Plus Query 39668 AATGTGAGTCCAGGCATTAGACCACGCTTTTTGAGCCAAAATATGGCAGCAAAAGATCCA 39727 || || | ||| ||||| || || | ||| |||||||| ||||| | ||||| |||| Sbjct 418642 AAAGTCAATCCTGGCATAAGTCCCCTCTTCTTGAGCCAGAATATTGATGCAAAGCTTCCA 418701 Query 39728 GAAAAGAAGATGCCTTCTACTGCTGCAAATGCAACAAGTCTCTCTCCGTAACTTGTATCA 39787 || ||||| |||||||| ||||| ||||| || |||| | || ||| || ||| | Sbjct 418702 GAGAAGAATATGCCTTCAACTGCAGCAAAAGCTACAATACGTTCACCGAAAGTTGCAGTC 418761 Query 39788 TTATGT---ATCCACTTCTGTGCCCAATCAGCTTTCTTCTTTAC 39828 || | ||||| | | ||||| ||||| ||||||||||| Sbjct 418762 TTGCTTGCAATCCATTGCATAGCCCAGTCAGCCTTCTTCTTTAC 418805 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 686837868080040