Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Melitaea_20cinxia_20[genbank_20GCA_5F000716385.1_202014-07-09] 8,261 sequences; 389,907,520 total letters Query= NC_027778.1 Length=124244 Score E Sequences producing significant alignments: (Bits) Value seq1957 96.9 3e-15 seq1988 93.3 3e-14 >seq1957 Length=467265 Score = 96.9 bits (106), Expect = 3e-15 Identities = 136/189 (72%), Gaps = 4/189 (2%) Strand=Plus/Plus Query 43829 GAAAAACATTTTAT--ATCTTTGGTTTTGGCGTTTTTTGCTGCGAGCGACGGGATAGTCA 43886 ||||||||||| || | | | || || ||||| |||||||| || || ||||||| Sbjct 418888 GAAAAACATTTCATTAAGCAT--GTATTAGCGTTCTTTGCTGCATCAGATGGCATAGTCA 418945 Query 43887 ATGAAAATTTGGTTAGTCGGTTTGCGCAAGAAGTTCAATTACCAGAAGCACGATGTTTTT 43946 |||| || | || || ||| | |||||||| || | ||||||| | ||||| | Sbjct 418946 ATGAGAACCTTGTGGAACGCTTTTCACAAGAAGTGCAGGTGACAGAAGCTAGGTGTTTCT 419005 Query 43947 ATGGGTTTCAAATTGCCATAGAAAATATTCATTCGGAAATGTACAGTCTTCTGATAGATA 44006 |||| ||||| ||||| || |||||| | || || || |||||| | | | || |||| Sbjct 419006 ATGGCTTTCAGATTGCTATGGAAAATGTACACTCAGAGATGTACTCTTTGTTAATTGATA 419065 Query 44007 CGTACATCA 44015 | ||||||| Sbjct 419066 CTTACATCA 419074 Score = 87.8 bits (96), Expect = 1e-12 Identities = 90/118 (76%), Gaps = 0/118 (0%) Strand=Plus/Plus Query 43677 TGCTTACAGAAAATCCGTCTAGGTTTGTCGTGTTTCCAATTCAATATCATGACATATGGC 43736 |||| | |||||| || | ||||| | || || || || || | ||| ||||||| Sbjct 418342 TGCTGAGAGAAAACCCCCGCCGCTTTGTTATATTCCCCATCCAGTACCCTGATATATGGC 418401 Query 43737 AAATGTACAAAAAAGCACAGGCGTCATTTTGGACAGCAGAAGAAGTTGATTTGACTAA 43794 ||||||||||||||||| |||| || |||||||| | |||||||||||| | |||| Sbjct 418402 AAATGTACAAAAAAGCAGAGGCCTCCTTTTGGACTGTTGAAGAAGTTGATCTATCTAA 418459 >seq1988 Length=441106 Score = 93.3 bits (102), Expect = 3e-14 Identities = 117/161 (73%), Gaps = 0/161 (0%) Strand=Plus/Plus Query 41049 ATGGCATTGCCACCTTGTCATTTGTTATGTCAGTTTTACGTTTGCAATGGTGAACTGTCA 41108 |||||| | ||||| ||||| | ||| |||||| | || ||| || || |||| Sbjct 379881 ATGGCACTTCCACCATGTCACTGCTTAGCACAGTTTCATGTGGCCAAGGGAAAATTGTCC 379940 Query 41109 TGTCAATTGTATCAAAGATCAGGTGACATGGGACTAGGGGTCCCGTTTAACATAGCGAGT 41168 || | |||||| |||||| | ||| ||||| | || || || |||||||| || ||| Sbjct 379941 TGCCTATTGTACCAAAGAAGTGCTGATATGGGCTTGGGTGTTCCCTTTAACATTGCAAGT 380000 Query 41169 TATGCTCTGCTCACGTATATGATTGCACACGTTACCAATTT 41209 |||||| | | || | ||||||||||| || |||||||| Sbjct 380001 TATGCTTTATTGACACACATGATTGCACATGTAACCAATTT 380041 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 397415983757305