Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Melitaea_20cinxia_20[genbank_20GCA_5F000716385.1_202014-07-09] 8,261 sequences; 389,907,520 total letters Query= NC_027923.1 Length=132831 Score E Sequences producing significant alignments: (Bits) Value seq538 320 1e-82 seq5066 107 2e-18 >seq538 Length=46986 Score = 320 bits (354), Expect = 1e-82 Identities = 1105/1701 (65%), Gaps = 47/1701 (3%) Strand=Plus/Plus Query 130406 TTTTCGACGGTGAATTGAATGGCATTGGTGGCCGGCTTGGTGCGCAAATAATACATGCCT 130465 || || || || |||||||| ||||| | || || || || || ||||| ||||| || Sbjct 41441 TTATCAACAGTAAATTGAATAGCATTAGCAGCTGGTTTAGTACGTAAATAGTACATTCCA 41500 Query 130466 GTTTTGAGTCCAATTTTGTGTCCATAATTGTGGAT-GCTGCACATTGTTTGGTAATTGGG 130524 ||||| | ||| || || |||| || || | || ||| || ||||| || Sbjct 41501 GTTTTCAATCCCATCTTCCAAGCATAGAAATGTATAGATGTTAATT-TTCCATAATTTGG 41559 Query 130525 TTGCGCCAC--GAATATGTTGAGCGATTGCGATTGATCAATAAAAGCGCCCCTGTCTGCA 130582 || || || |||||| | | || || ||||||||||| || || || |||||| Sbjct 41560 TTCAGCTACATGAATAT--TAAATGACTGACTCTGATCAATAAACGCTCCTCTATCTGCA 41617 Query 130583 GCCATGTCGAGCATGGTTTTATTTTTCATCTCCCAAGCGGTCTTGTATAGATCCCTAATG 130642 ||||| | | | ||||| | || |||||| | |||||||||| ||||| || Sbjct 41618 GCCATTTGTATAGTTGTTTTCACTGAAATTTCCCAAACTGTCTTGTATAAGTCCCTTATT 41677 Query 130643 TGTTTGGGTATGCGCGCAATCGATTGAACGCTACCGTTGTTGGCTATAATTTCGTTGCGC 130702 | ||| || || |||| ||| | || |||||| || || || | Sbjct 41678 TTTTTTGGAATCTTTTCAATATTTTGTATAGATCCATTGTTGTGAATTATCAAATTTTTC 41737 Query 130703 ATACTTTTATCGTACAATCCAAGCTGTACAAGATCTTTTACCAAATGATTATTAATGATT 130762 ||| || ||| | || || || | |||| ||| | ||||| |||| | | Sbjct 41738 ATATCTTCATCCCATAAGTCAGCTTGGGTTAAATCTGTTAAGAGATGATGGTTAACAACT 41797 Query 130763 TGAAAATCACCAGCCAGGACGCGTCTAACGTAAATGTTGCTCGTGAACGGTTCAAAGGAT 130822 ||||| ||||||| | || || | ||||||||| || || |||||||| ||| Sbjct 41798 TGAAACTCACCAGATAATACCCGGCGTTGGTAAATGTTTGAAGTAAATGGTTCAAAAGAT 41857 Query 130823 TCGTTGTTGCCGAATATTTGTGCTGTAGTTGCGGTGGGCATGTATGCCACTAATAGAGAA 130882 || || || || | ||| |||||||| | || || ||||| || | || || ||| Sbjct 41858 TCATTATTTCCAAGTATCTGTGCTGTGGAAGCAGTTGGCATTGGAGCTAACAAAAGGGAA 41917 Query 130883 TTACGAAGACCGTGCGTCGTGATTTTTCGCTTCAATTCATCCCAATCCCATAGAGAGGTA 130942 ||||||||||| ||| | | ||||||| || || || ||||||||| ||| ||| Sbjct 41918 TTACGAAGACCATGCTTTGCAATTTTTCTTTT-AAGGCAGTCCAATCCCACAGATCAGTA 41976 Query 130943 GGTTTGACATTGTTCCACATATCAAATTGTAGTATGCCTTTACTGGCGGGACTGGATTCG 131002 || | |||| |||||| ||| |||||| ||||||| ||| || ||||| || Sbjct 41977 GGAGTC---TTGTCCCACATGTCATATTGTAAAATGCCTTGACTTGCAGGACTTCCATCA 42033 Query 131003 -AACGATTCGTAGATTCCTTCGACACGAGCCAGGTCGTTGCTAGCTTCCAAAGCTCCGTA 131061 ||| | ||| | ||||| |||| || |||||||| |||||||| || Sbjct 42034 TAACTAGA-GTAAACACCTTCCTTCTCTGCCAATTCACAACTAGCTTCTAAAGCTCCATA 42092 Query 131062 ATAAATGGTTTCGGCAATTTGTTTATTTAATTGTTTCGCTTGGTTGCTCTCGTAAGGAAA 131121 || || ||||| ||||||| ||| | | | |||| | ||||| || ||||| Sbjct 42093 GTATATAGTTTCAAATATTTGTTGATTAAGTAAAATTGCTTCTTCACTCTCATAGGGAAA 42152 Query 131122 TTTCATTAAAATAAAAGCGTCTGCGAGACCCTGTATCCCAACGCCCACCGGTCTATGTTT 131181 | ||||||| | ||| || ||||| | ||||| | || | ||| | || |||||||| Sbjct 42153 TCTCATTAACACAAATGCATCTGCTAATCCCTGAACACCGATGCCAATAGGCCTATGTTT 42212 Query 131182 TAAATTACATTTACGCGAACATTCGGTG--GGATAAAGGTTAATGTCAATTATTTTGTTT 131239 | ||| | || | | | || ||||| | ||||| ||||| || || ||| Sbjct 42213 CATATTCGAATTCTTTG--CTTCTGGCACTGGATAGAAGTTAACATCAATAATCTTATTT 42270 Query 131240 AAATTGCGCACTACAATTTGTGTGACGCTTTTCAATTTGTCGAAATCAAACGTGCCAGTT 131299 ||||| | ||| ||| || || ||| ||||| | |||| ||| || | || Sbjct 42271 AAATTTTGTGTAACAGTTTTAGTAACCTGTTTTAATTTTTGAAAATTAAAAGTTTTATTT 42330 Query 131300 TCGAGGTTTACAAATTGATTTACACATATTGACGCCAGATTACAAACTGCCGTTTCGTCA 131359 || | |||| ||| ||| ||| ||||| | ||| || |||||| ||| ||| Sbjct 42331 TCAA------CAAACATATTAACAGCTATGGACGCTAAATTGCACACTGCCACTTCATCA 42384 Query 131360 --TAATCGCAATACTGAACAATTTCGGCGCACAAATTACTGCTCTTTATGGTGCCCAAAT 131417 | || ||||| ||||||||| | ||| | || |||| ||||| ||||| | || Sbjct 42385 GGTGATGT--ATACTCAACAATTTCTGTGCAAAGGTTGCTGCATTTTATAGTGCCAAGAT 42442 Query 131418 TTTGTTGATTGCTTTTAGCATTCACATGGTCCTTGTACATCATGTAGGGCGTGCCCGTTT 131477 ||| |||||| ||||| || | || || |||| ||| || || || || |||| Sbjct 42443 TTTTTTGATTACTTTTTCTGTTGCAAGAATCTTTATACAACATATATGGTGTTCCTGTTT 42502 Query 131478 CGACTTGAGTTTCAATAATG--TATCGAAAGAGTTTTCGAGCAGACAATTGATATTTGTA 131535 | ||||| | ||| || || | || | | | | | ||| | ||| | || | Sbjct 42503 CAACTTGTGCTTCTATTATTGCTTTCCACAAAACCT--GTGCACGAACTTGTT--TTACA 42558 Query 131536 TTGGCCGCGTTT----TTCGTAATTTTCGTACAACGTTTCAAAGTTTTGGCCA-AACGAA 131590 | | || ||| ||| || ||||| || || | |||||| | || || ||| | Sbjct 42559 TAG--CGTTTTTCTTGTTCATACTTTTCATATAAAGCTTCAAATTCTTCACCCCAACAAT 42616 Query 131591 CTGTCCAAATTGGGACATTCGCTGGGACACATTAGCGACCACACGCCGTTCTGTTCAACT 131650 | | |||| || || | | |||||||| || ||| | || | ||| || Sbjct 42617 CAG-CCAATCCAGGGCAGTTGTGAGGACACATAAGACTCCAATTTTCATTTTTTTCTACC 42675 Query 131651 CGCTTCATAAACAAATCCGGCACCCATAACGCGTACAACAGATCTCTAGCTTTTTTCTCT 131710 || |||||||||||||| || | |||||| || || || | ||||| ||| | ||| Sbjct 42676 CGTTTCATAAACAAATCTGGTATCCATAAAGCATAGAATAATTCTCTTGCTCGTACTTCT 42735 Query 131711 TCTGTACCCATAAtttttttCAAATTTAAAAAGTCCAAAATGTCCGCATGCCAGGGTTCC 131770 ||| |||| || | ||||| |||| |||||| || || | || || ||||| |||||| Sbjct 42736 TCTTTACCAGTATTCTTTTTTAAATCTAAAAATTCAAAGACATCTGCGTGCCAAGGTTCC 42795 Query 131771 AAATACACTGCCATTGCGCCTTTGCG---CTTACCGCCTTGATTAACATGACGAACCATG 131827 ||||||||||| | ||| || ||| ||||| ||||||| |||| | | || Sbjct 42796 AAATACACTGCAAATGCTCCAGGGCGTTTGTTACCCCCTTGATCCACATATCTGGCAGTG 42855 Query 131828 TTGTTGTATACGCGCAACATGGGCTCCAAACCGTTGGCGTTTCCATTGGTGCTCTTAATG 131887 || || || || | ||||| || | | ||| |||| | ||||| || | ||| Sbjct 42856 TTATTATAGACTCTTAACATAGGAACAAGACCATTGGAAATCCCATTTGTACCAGCAATA 42915 Query 131888 TAGCTGCCATTGGCTCTGATTTTGTGAACGTTGAGTCCAATACCTCCGCCGTATTTAGAG 131947 || | || || ||||| || || || | | || |||||||| | | || || Sbjct 42916 TAAGTTCCTTTAGCTCTTATGCAATGCACATGAACACCGATACCTCCAGCTGACTTGGAA 42975 Query 131948 ATTAGTGCGCATTTGGTTAGAGTGTTATAGATACCTTCCACGCTGTCCGCGGCAATGTCG 132007 |||| ||| |||| |||| || | ||| || ||||| | ||||| | || | Sbjct 42976 ATTAATGCACATTGTTTTAGTGTATCATATATTCCTTCGATACTGTCATCTTTCATAGCT 43035 Query 132008 ACTAAAAAGCAAGAGGACAACT--GTTGGTGAAATGTGCCGGCTGAAAACAATGTGGGGC 132065 || | || ||||| ||||| | | | || | || | || ||||||| ||| |||| Sbjct 43036 ACAAGGAAACAAGAAGACAATTGAGGTCTTGGA--GTCGCAGCAGAAAACATTGTTGGGC 43093 Query 132066 TGGCGTGTGTAAAAAGTTTTT 132086 | || || |||||| ||||| Sbjct 43094 TTGCATGAGTAAAATATTTTT 43114 >seq5066 Length=19128 Score = 107 bits (118), Expect = 2e-18 Identities = 160/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 27021 CCTCCGCGCAACCGCAATACCAAATGTAACGTAGAGTCTTTTTGAATATTGTAGTCGCTC 27080 || || || | ||| | |||| |||||| ||||| ||||||||||| || || ||| Sbjct 18849 CCACCACGAAGCCGGAGAACCAGATGTAAGGTAGATTCTTTTTGAATGTTATAATCGGAT 18790 Query 27081 ATGTTGCGCTCGTCTTCGAGCTGTTTACCGGCGTAAATGAGACGCTGTTGATCCGGCGGC 27140 | | | || | ||||| ||||| || || || |||| | ||| || ||||| || || Sbjct 18789 AAGGTTCGACCATCTTCAAGCTGCTTTCCAGCAAAAATCAAACGTTGCTGATCTGGGGGA 18730 Query 27141 ACACCCTCTTTATCGGCGATCTTGTTTTTCAGGGTTTCTACAGTGTCTGTGGCTTCAACT 27200 | || ||||| || ||||| ||| | | |||| | || || | | ||||||| Sbjct 18729 ATGCCTTCTTTGTCTTGAATCTTCGCTTTAACGTTTTCGATGGTATCGGATGGTTCAACT 18670 Query 27201 TCTAGAGTTATAGATTTGCCCGTCAGAGTTTTCACAAAGATTTGCAT 27247 |||| ||| |||| || ||||| ||||| ||||| || || ||||| Sbjct 18669 TCTAAAGTAATAGTCTTACCCGTGAGAGTCTTCACGAAAATCTGCAT 18623 Score = 98.7 bits (108), Expect = 8e-16 Identities = 150/211 (71%), Gaps = 2/211 (1%) Strand=Plus/Minus Query 27038 TACCAAATGTAACGTAGAGTCTTTTTGAATATTGTAGTC-GCTCATGTTGCGCTCGTCTT 27096 |||||| || | ||||| || ||||||||||| ||||| | | ||| || |||||| Sbjct 19060 TACCAAGTGAAGTGTAGACTCCTTTTGAATATTATAGTCTGATAGTGTA-CGACCGTCTT 19002 Query 27097 CGAGCTGTTTACCGGCGTAAATGAGACGCTGTTGATCCGGCGGCACACCCTCTTTATCGG 27156 | || || || || || | || | |||||||||||| || || | || ||||| || Sbjct 19001 CAAGTTGCTTGCCAGCAAAGATCAAACGCTGTTGATCTGGGGGAATGCCTTCTTTGTCTT 18942 Query 27157 CGATCTTGTTTTTCAGGGTTTCTACAGTGTCTGTGGCTTCAACTTCTAGAGTTATAGATT 27216 ||||| ||| | | || | ||| || | | ||||||||| || ||||||| || Sbjct 18941 GAATCTTTGCTTTGACATTCTCGATAGTATCCGAAGGTTCAACTTCGAGCGTTATAGTTT 18882 Query 27217 TGCCCGTCAGAGTTTTCACAAAGATTTGCAT 27247 | || || |||||||| || || || ||||| Sbjct 18881 TACCTGTAAGAGTTTTAACGAAAATCTGCAT 18851 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 424891617206232