Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Melitaea_20cinxia_20[genbank_20GCA_5F000716385.1_202014-07-09] 8,261 sequences; 389,907,520 total letters Query= NC_028091.1 Length=196300 Score E Sequences producing significant alignments: (Bits) Value seq538 105 8e-18 >seq538 Length=46986 Score = 105 bits (116), Expect = 8e-18 Identities = 868/1392 (62%), Gaps = 32/1392 (2%) Strand=Plus/Plus Query 110706 GGTAGATGTTTGTTGTGTATGGTTCAAAGCATTCATTATTACCCAAGATTTGTGCGGTGG 110765 |||| ||||||| || |||||||||| |||||||||| || | || ||||| |||| Sbjct 41826 GGTAAATGTTTGAAGTAAATGGTTCAAAAGATTCATTATTTCCAAGTATCTGTGCTGTGG 41885 Query 110766 AGGCTGTTGGCATTGGTGCCATCAAAAGACTGTTACGAAGACCCTTCTCCTTG-ATGCGT 110824 | || ||||||||||| || | |||||| ||||||||||| | || ||| | | Sbjct 41886 AAGCAGTTGGCATTGGAGCTAACAAAAGGGAATTACGAAGACCATGCT--TTGCAATTTT 41943 Query 110825 TCCTTGAGAACATCCCAGT--CGTAGTTGAGCTTGGTTTCACCTTCCCACATGTCAAACT 110882 || || | || ||| | | || | || | || || |||||||||||| | | Sbjct 41944 TCTTTTAAGGCAGTCCAATCCCACAGATCAG-TAGGAGTC-TTGTCCCACATGTCATATT 42001 Query 110883 GAAGCACCCCTTGGGACGCGGGAGAACCCTCAAAGGTTTCATAGGAACCTTGGGCTTCAG 110942 | | | ||||| || ||| || ||| | | || ||||| || | Sbjct 42002 GTAAAATGCCTTGACTTGCAGGACTTCCATCATAACTAGAGTAAACACCTTCCTTCTCTG 42061 Query 110943 CCAATTCACAGCTCGCCTCCAGGGATGCGTGATACATGGTTTCAAAGATACGAGCATTCA 111002 |||||||||| || || || | | | | | || || |||||||| || | ||| | Sbjct 42062 CCAATTCACAACTAGCTTCTAAAGCTCCATAGTATATAGTTTCAAATATTTGTTGATTAA 42121 Query 111003 TCTCCTTGGCTTCATCTGAATCAAATGCGTAGCGGCACAAAATAAATACATCCGCGAGAC 111062 | ||||| || ||| | | | | || | |||| |||| || | | Sbjct 42122 GTAAAATTGCTTCTTCACTCTCATAGGGAAATCTCATTAACACAAATGCATCTGCTAATC 42181 Query 111063 CTTGAACACCCAAACCAATAGGTCTGTGTCGCATATTAGACTTTCGCGCAGTCT-CAACG 111121 | |||||||| | |||||||| || ||| |||||| || || || ||| || Sbjct 42182 CCTGAACACCGATGCCAATAGGCCTATGTTTCATATTCGAATTCTTTGC-TTCTGGCACT 42240 Query 111122 GGATAAAAATTTCTGTCAATGACTCGGTTTAGATTTTTGGTAACAATCTTTGTGATTTCA 111181 ||||| || || ||||| | |||| ||||| |||||| | || || | | Sbjct 42241 GGATAGAAGTTAACATCAATAATCTTATTTAAATTTTGTGTAACAGTTTTAGTAACCTGT 42300 Query 111182 TGAAGTTTTTCATAATCAAAAGTGCGAGTCTCTTCATTGACATACTTTGGAAGGGCGATT 111241 | | ||||| | ||| |||||| | | |||| ||| || | || || || Sbjct 42301 TTTAATTTTTGAAAATTAAAAGT---TTTATTTTCA---ACAAACATATTAACAGCTATG 42354 Query 111242 GATGCCAAATTGCAAACAGCCGTCTCATCCTTATCTGTGTACTCTAAAATTTCTGTACAT 111301 || || |||||||| || ||| ||||| ||| ||||| | ||||||||| || Sbjct 42355 GACGCTAAATTGCACACTGCCACTTCATCAGGTGATGTATACTCAACAATTTCTGTGCAA 42414 Query 111302 AAGTTGGAACTCTTAATCGTCCCCAAATTCTTTTGGTTACTCTTCTTGTTGCACGCATCC 111361 | |||| | || || || || | ||| ||||| ||||| || ||||||| | ||| Sbjct 42415 AGGTTGCTGCATTTTATAGTGCCAAGATTTTTTTGATTACTTTTTCTGTTGCAAGAATCT 42474 Query 111362 TTGTAGAGCATGTAGGGCGTCCCCGTCTCCGTCTGTGATTTGAGAATAGCCTTCCAAACA 111421 || || | ||| || || || || || || |||| || | || || ||||| | | Sbjct 42475 TTATACAACATATATGGTGTTCCTGTTTCAACTTGTGCTTCTATTATTGCTTTCCACAAA 42534 Query 111422 TCGGCGGCTG-GTACAATGGCGTTGGCC----CGTCCCTCCGCCTCGTACTTTGTGTAGA 111476 | ||| | || | ||| | ||| || || |||||| || | Sbjct 42535 AC-----CTGTGCACGAACTTGTTTTACATAGCGTTTTTCTTGTTCATACTTTTCATATA 42589 Query 111477 GGGCTTCAAACTCCTCACCCACCGCGTCGGAGAGACCTGGTGCCTTGTCTGGACAGAAAA 111536 |||||||| || |||||| || | | || || |||| ||||| | || Sbjct 42590 AAGCTTCAAATTCTTCACCCCAACAATCAGCCAATCCAGGGCAGTTGTGAGGACACATAA 42649 Query 111537 GAGACCATTGACCACCTTCCTCAACCCGCTTCATGAAAAGGTCTGGAATCCACAGGGATG 111596 || ||| | || || || ||||| ||||| || | ||||| ||||| | | Sbjct 42650 GACTCCAATTTTCATTTTTTTCTACCCGTTTCATAAACAAATCTGGTATCCATAAAGCAT 42709 Query 111597 AAAAGAGATCTCTACACCGAGCCTCTTCGTCACCTTGGTTGAGTCGTAACTCAAGGAACT 111656 | || | ||||| || | ||||| | ||| || | ||| || | || | Sbjct 42710 AGAATAATTCTCTTGCTCGTACTTCTTCTTTACCAGTATTCTTTTTTAAATCTAAAAATT 42769 Query 111657 CCATGATATCCGCGTGCCATGGCTCAAGATAGACTGCGATAGATCC----CTTTCGACGC 111712 | | || ||| |||||||| || || | ||| ||||| | | ||| | || | | Sbjct 42770 CAAAGACATCTGCGTGCCAAGGTTCCAAATACACTGCAAATGCTCCAGGGCGTTTGTTAC 42829 Query 111713 CCAGCTTGATTTACATAGCGCGCTGTGGCGTTAAATACGCGAAGCATTGGAATAATACCA 111772 || |||||| ||||| | || ||| ||| | || | | ||| |||| || |||| Sbjct 42830 CC-CCTTGATCCACATATCTGGCAGTGTTATTATAGACTCTTAACATAGGAACAAGACCA 42888 Query 111773 TCTGATTGACCATTTGTCCCCCGAATACGAGATTTATTGGCTCTCACATCATGGATGTGC 111832 | || |||||||| || |||| || | || ||||| | ||| | || Sbjct 42889 TTGGAAATCCCATTTGTACCAGCAATATAAGTTCCTTTAGCTCTTATGCAATGCACATGA 42948 Query 111833 ATCCCAATACCCCCAGCCCACTTTGAGATTTGCGCACACTCCGTAAGAGTTCCATAGATA 111892 | || ||||| ||||| |||| || ||| ||||| | | || || |||| || Sbjct 42949 ACACCGATACCTCCAGCTGACTTGGAAATTAATGCACATTGTTTTAGTGTATCATATATT 43008 Query 111893 CCGTTGATTGAGTCCTCCTTGTTGGCGATAAGGAAGCAACTGGACATCTGCGGTCTTGGT 111952 || | ||| ||| || || | || | |||||| ||| |||| || |||||||| Sbjct 43009 CCTTCGATACTGTCATCTTTCATAGCTACAAGGAAACAAGAAGACAATTGAGGTCTTGGA 43068 Query 111953 GTACCAGCATTGAAGAGGGTTGGTGTTGCGTGAATGAACATA-CCTTGGGACATCTTGTC 112011 || ||||| || | ||||| |||| ||| | || ||| || || | | | Sbjct 43069 GTCGCAGCAGAAAACATTGTTGGGCTTGCATGAGT-AAAATATTTTTCAGATAACAAATT 43127 Query 112012 GTATGTCTCCAAGACAGAATCAATGTCTTCCCCGTGGATGCCGATTGCGACCCGCATGAA 112071 ||| || | | | | ||| || ||||||||||| ||||| | || || ||||| | Sbjct 43128 GTAAGTGTTTATAGCTGCATCTATATCTTCCCCGTGTATGCCAACAGCAACACGCATCAG 43187 Query 112072 CATGTACTGTGG 112083 ||| | ||| || Sbjct 43188 CATATGCTGGGG 43199 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 627967147845600