Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Melitaea_20cinxia_20[genbank_20GCA_5F000716385.1_202014-07-09] 8,261 sequences; 389,907,520 total letters Query= NC_028093.1 Length=182309 Score E Sequences producing significant alignments: (Bits) Value seq538 98.7 1e-15 >seq538 Length=46986 Score = 98.7 bits (108), Expect = 1e-15 Identities = 595/946 (63%), Gaps = 17/946 (2%) Strand=Plus/Minus Query 104320 TCACGCAACACCAACCCTCTTCAATGCTGGTACACCAAGACCCCAAATGTCCAGTTGCTT 104379 ||| |||| ||||| | || ||||| || |||||||| ||| |||| ||| || Sbjct 43101 TCATGCAAGCCCAACAATGTTTTCTGCTGCGACTCCAAGACCTCAATTGTCTTCTTGTTT 43042 Query 104380 CCTTATCGCCAACAAGGAGGACTCAATCAACGGTATCTATGGAACTCTTACGGAGTGTGC 104439 |||| | || | || || ||| ||| | || || |||| || || | | ||||| Sbjct 43041 CCTTGTAGCTATGAAAGATGACAGTATCGAAGGAATATATGATACACTAAAACAATGTGC 42982 Query 104440 GCAAATCTCAAAGTGGGCTGGGGGTATTGGGATGCACATCCATGATGTGAGAGCCAATAA 104499 ||| || |||| ||||| ||||| || | || | ||| | ||||| || Sbjct 42981 ATTAATTTCCAAGTCAGCTGGAGGTATCGGTGTTCATGTGCATTGCATAAGAGCTAAAGG 42922 Query 104500 ATCTCGTATTCGGGGGACAAATGGTCAATCAGATGGTATTATTCCAATGCTTCGCGTATT 104559 | || |||| || |||||||| || ||||| || |||| ||| | | || | Sbjct 42921 AACTTATATTGCTGGTACAAATGGGATTTCCAATGGTCTTGTTCCTATGTTAAGAGTCTA 42862 Query 104560 TAACGCCACAGCGCGCTATGTAAATCAAGCTGGGCGTCGAAAG----GGATCTATCGCAG 104615 ||| ||| || | ||||| |||||| ||| | || | ||| | | |||| Sbjct 42861 TAATAACACTGCCAGATATGTGGATCAAGG-GGGTAACAAACGCCCTGGAGCATTTGCAG 42803 Query 104616 TCTATCTTGAGCCATGGCACGCGGATATCATGGAGTTCCTTGAGTTGCGTCTCAACCAAG 104675 | ||| | || || |||||||| ||| || | || || | || || || | Sbjct 42802 TGTATTTGGAACCTTGGCACGCAGATGTCTTTGAATTTTTAGATTTAAAAAAGAATACTG 42743 Query 104676 GTGACGAGGAGGCGCGGTGCCGCGATCTCTTCTCCGCTCTCTGGATTCCAGATCTCTTCA 104735 || | || || | || | || | |||| ||| | ||||| |||||| | || | Sbjct 42742 GTAAAGAAGAAGTACGAGCAAGAGAATTATTCTATGCTTTATGGATACCAGATTTGTTTA 42683 Query 104736 TGAAGAGAGTTGAGGAGAGTGGCAATTGGTCTCTCTTTTGTCCAGACAAGGCACCTGGTC 104795 |||| | || || | | || |||||| ||| | ||||| |||| ||||| Sbjct 42682 TGAAACGGGTAGAAAAAAATGAAAATTGGAGTCTTATGTGTCCTCACAACTGCCCTGGAT 42623 Query 104796 TCTCCGATGCCGTGGGTGAGGAGTTTGAAGCCCTTTACACAAAGTACGAGGAAGAAGGTC 104855 | | ||| |||||| || |||||||| | || |||||| || ||||| | Sbjct 42622 TGGCTGATTGTTGGGGTGAAGAATTTGAAGCTTTATATGAAAAGTATGAACAAGAAAAAC 42563 Query 104856 GGGCGAC-TGCGACG-GTGCCAGCTGCCGATGTGTGGAAAGCTATTCTCAAGTCTCAAAC 104913 | | | | || || | || | | |||||||||| || | | | ||| Sbjct 42562 G--CTATGTAAAACAAGTTCGTGCACAGGTTTTGTGGAAAGCAATAATAGAAGCACAAGT 42505 Query 104914 CGAGACTGGTACACCATACATGCTTTACAAAGACGCCTGTAACCAAAAGAGTAATCAAAA 104973 || || || |||||||| ||| | || ||||| | || ||| ||| ||||||||||| Sbjct 42504 TGAAACAGGAACACCATATATGTTGTATAAAGATTCTTGCAACAGAAAAAGTAATCAAAA 42445 Query 104974 GAATTTGGGTGTGATCAAGAGTTCCAATCTCTGTACAGAAATCTTGGAATTTACAGACAA 105033 ||| | || || || | ||| || || |||||||| | || | |||| Sbjct 42444 AAATCTTGGCACTATAAAATGCAGCAACCTTTGCACAGAAATTGTTGAGTATACATCACC 42385 Query 105034 AGATGAGACGGCTGTGTGTAACCTCGCATCAATCGCTCTCCCCAAGTATGTGGATCCAGA 105093 ||||| ||| ||||| || | || || || ||| | | || ||| || | Sbjct 42384 TGATGAAGTGGCAGTGTGCAATTTAGCGTCCATAGCTGTTAATATGTTTGTTGA-----A 42330 Query 105094 GACAAAGACATTTGATTATGAAAAACTCCACGAAGTTACGAAAACTGTCACCAAAAACCT 105153 | ||| || ||| ||| | ||||| | | | ||||| |||||||| || |||| | Sbjct 42329 AATAAA-ACTTTTAATTTTCAAAAATTAAAACAGGTTACTAAAACTGTTACACAAAATTT 42271 Query 105154 AAACAGAGTTATTGATAGAAATTTTTACCCCGT-TGAGACTGCTCGTAAATCTAATATGA 105212 ||| | |||||||| || || || || || ||| || || || ||||||| Sbjct 42270 AAATAAGATTATTGATGTTAACTTCTATCCAGTGCCAGA-AGCAAAGAATTCGAATATGA 42212 Query 105213 GACACCGTCCAATTGGTCTCGGTGTTCAGGGTCTCGCGGATGTATT 105258 ||| | || ||||| ||||||||||||| | || |||| ||| Sbjct 42211 AACATAGGCCTATTGGCATCGGTGTTCAGGGATTAGCAGATGCATT 42166 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 583200571031640