Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Melitaea_20cinxia_20[genbank_20GCA_5F000716385.1_202014-07-09]
8,261 sequences; 389,907,520 total letters
Query= NC_028112.1
Length=178262
Score E
Sequences producing significant alignments: (Bits) Value
seq5066 150 2e-31
seq1291 127 2e-24
>seq5066
Length=19128
Score = 150 bits (166), Expect = 2e-31
Identities = 170/228 (75%), Gaps = 0/228 (0%)
Strand=Plus/Plus
Query 27406 ATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGT 27465
||||| || || || ||||| || || || |||||||||||| | || ||||| ||
Sbjct 18623 ATGCAGATTTTCGTGAAGACTCTCACGGGTAAGACTATTACTTTAGAAGTTGAACCATCC 18682
Query 27466 GATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAG 27525
|||| ||| | ||| | || || || ||||| ||||| || || ||||| ||||| |||
Sbjct 18683 GATACCATCGAAAACGTTAAAGCGAAGATTCAAGACAAAGAAGGCATTCCCCCAGATCAG 18742
Query 27526 CAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAAT 27585
|| ||| | ||||||||||| ||||| || || |||| ||| ||| || | || |||||
Sbjct 18743 CAACGTTTGATTTTTGCTGGAAAGCAGCTTGAAGATGGTCGAACCTTATCCGATTATAAC 18802
Query 27586 GTCCAAAAGGAATCCACTCTTCATCTAGTCTTGCGTCTTCGCGGTGGA 27633
| ||||| ||||| || | ||||| || | || ||||| ||||||
Sbjct 18803 ATTCAAAAAGAATCTACCTTACATCTGGTTCTCCGGCTTCGTGGTGGA 18850
Score = 145 bits (160), Expect = 9e-30
Identities = 169/228 (74%), Gaps = 0/228 (0%)
Strand=Plus/Plus
Query 27405 AATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGG 27464
|||||| || || || || || ||||| || || ||||| || || || ||||| |
Sbjct 18850 AATGCAGATTTTCGTTAAAACTCTTACAGGTAAAACTATAACGCTCGAAGTTGAACCTTC 18909
Query 27465 TGATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCA 27524
|||| || | ||| | || || || ||||| ||||| || || ||||| ||||| ||
Sbjct 18910 GGATACTATCGAGAATGTCAAAGCAAAGATTCAAGACAAAGAAGGCATTCCCCCAGATCA 18969
Query 27525 GCAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAA 27584
|||||| | || |||||||| |||||||| || || | |||||| ||| ||||||||||
Sbjct 18970 ACAGCGTTTGATCTTTGCTGGCAAGCAACTTGAAGACGGTCGTACACTATCAGACTATAA 19029
Query 27585 TGTCCAAAAGGAATCCACTCTTCATCTAGTCTTGCGTCTTCGCGGTGG 27632
| | |||||||| || || ||||| | || | ||||| || |||||
Sbjct 19030 TATTCAAAAGGAGTCTACACTTCACTTGGTACTTCGTCTCCGTGGTGG 19077
>seq1291
Length=99781
Score = 127 bits (140), Expect = 2e-24
Identities = 102/123 (83%), Gaps = 0/123 (0%)
Strand=Plus/Plus
Query 27406 ATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGT 27465
||||| || || |||||||| || || |||||||| || ||||||||||| ||| | |
Sbjct 93216 ATGCAGATTTTCGTCAAGACCCTCACGGGCAAGACCATCACTCTTGAGGTCGAGCCGTCT 93275
Query 27466 GATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAG 27525
|||| ||| | |||| |||||||||||||||| ||||| |||||||| ||||| ||||||
Sbjct 93276 GATACCATCGAAAATGTGAAGGCTAAAATTCAAGACAAAGAGGGAATCCCTCCCGACCAG 93335
Query 27526 CAG 27528
|||
Sbjct 93336 CAG 93338
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 570251508322320
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |