Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Melitaea_20cinxia_20[genbank_20GCA_5F000716385.1_202014-07-09]
8,261 sequences; 389,907,520 total letters
Query= NC_028491.1
Length=98392
Score E
Sequences producing significant alignments: (Bits) Value
seq2668 141 6e-29
seq5066 118 7e-22
>seq2668
Length=134947
Score = 141 bits (156), Expect = 6e-29
Identities = 195/273 (71%), Gaps = 0/273 (0%)
Strand=Plus/Minus
Query 47093 CATCCTCAATATTCATCTGAAGCTGCTCGTTTGAACACTTTTAAAGATTGGCCTCGTGGT 47152
|| |||| ||| | || || || ||||| || ||| ||||| |||||||| || ||
Sbjct 31173 CACCCTCGGTATGCTTCAGAGGCCGCTCGATTACGCACCTTTAAGGATTGGCCCCGCAGT 31114
Query 47153 TTGCGTCAGAGACCAAAAGAGTTAGCGGACGCGGGCTTCTTTTATACTGGTGAAGGTGAT 47212
|| || | ||| | || | || || || ||||| || ||||| ||| | || |||
Sbjct 31113 ATGAAACAAAAACCCGAGGAACTTGCCGAAGCTGGCTTTTTCTATACCGGTAACGGAGAT 31054
Query 47213 AAAACGAAGTGTTATTATTGTGATGGTGGTCTGAGAGATTGGAACGAAGAAGATATACCT 47272
|| ||| ||| | ||||||||| || ||||| || |||||| | | || ||| ||||
Sbjct 31053 AAGACGTTGTGCTTTTATTGTGACGGGGGTCTTAGGGATTGGGAGAACGACGATGTACCG 30994
Query 47273 TGGGAGGAGCACGCTCGTTGGTTTGATCGTTGTGTCTACGTTAAATTGGTAAAAGGAGAA 47332
|||||| | || ||||||||||| ||||| || | ||| || || | ||||||||
Sbjct 30993 TGGGAGCAACATGCTCGTTGGTTCGATCGCTGCGCCTATGTACAACTCGTAAAAGGGCGG 30934
Query 47333 GATTTTATTCAAAGAGTTAAATCGGAAGCGTGT 47365
|||| | |||| ||||| |||||||| |||
Sbjct 30933 GATTACGTACAAAAAGTTATTTCGGAAGCTTGT 30901
Score = 111 bits (122), Expect = 1e-19
Identities = 102/129 (79%), Gaps = 0/129 (0%)
Strand=Plus/Minus
Query 46868 AACGGATTTTATTATCTTGGAAGAGGTGATGAAGTTCGATGCGCCTTTTGCAAGGTTGAG 46927
||||||||||||||||| ||| |||| || || || ||||||| || || ||||| ||
Sbjct 31422 AACGGATTTTATTATCTCGGACGAGGAGACGAGGTGAGATGCGCGTTCTGTAAGGTGGAA 31363
Query 46928 ATCATGCGTTGGGAAGAGGGTGATGATCCTGCCGAAGACCATAAACGTTGGGCTCCTCAG 46987
|||||| |||| || ||||| |||||||| |||||||| | || ||||| || |||
Sbjct 31362 ATCATGAAGTGGGTGGAAGGTGACGATCCTGCGAAAGACCATCAGCGATGGGCGCCGCAG 31303
Query 46988 TGTCCGTTC 46996
||||| |||
Sbjct 31302 TGTCCTTTC 31294
>seq5066
Length=19128
Score = 118 bits (130), Expect = 7e-22
Identities = 159/219 (73%), Gaps = 2/219 (1%)
Strand=Plus/Minus
Query 34489 AGACGCAACACCAAATGGAGAGTGCTCTCCTTTTGAATGTTATAATCTGAAAGTGTTCGC 34548
||||| | ||||| || || || |||||||||||| ||||| ||||| ||||| ||
Sbjct 19068 AGACGAAGTACCAAGTGAAGTGTAGACTCCTTTTGAATATTATAGTCTGATAGTGTACGA 19009
Query 34549 TCGTCTTCAAGTTGTTTACCGGCAAATATTAAACGCTGTTGGTCCGGCGGCACTCCCTCC 34608
||||||||||||| || || ||||| || ||||||||||| || || || | || ||
Sbjct 19008 CCGTCTTCAAGTTGCTTGCCAGCAAAGATCAAACGCTGTTGATCTGGGGGAATGCCTTCT 18949
Query 34609 TTGTCTGTGATCTTTTGTTTTAACGAT-AAAATTGTGTCTTCGCTCTCCACTTCCACGGT 34667
|||||| ||| |||| ||| || | || || || || ||||| | ||
Sbjct 18948 TTGTCT-TGAATCTTTGCTTTGACATTCTCGATAGTATCCGAAGGTTCAACTTCGAGCGT 18890
Query 34668 TATCGTTTTACCGGTTAACGTTTTCACAAAAATCTGCAT 34706
||| |||||||| || | ||||| || |||||||||||
Sbjct 18889 TATAGTTTTACCTGTAAGAGTTTTAACGAAAATCTGCAT 18851
Score = 87.8 bits (96), Expect = 1e-12
Identities = 139/197 (71%), Gaps = 2/197 (1%)
Strand=Plus/Minus
Query 34516 TCCTTTTGAATGTTATAATCTGAAAGTGTTCGCTCGTCTTCAAGTTGTTTACCGGCAAAT 34575
|| ||||||||||||||||| || | ||||| | |||||||| || || || |||||
Sbjct 18813 TCTTTTTGAATGTTATAATCGGATAAGGTTCGACCATCTTCAAGCTGCTTTCCAGCAAAA 18754
Query 34576 ATTAAACGCTGTTGGTCCGGCGGCACTCCCTCCTTGTCTGTGATCTTTTGTTTTAACG-A 34634
|| ||||| || || || || || | || || |||||| ||| || | |||||||
Sbjct 18753 ATCAAACGTTGCTGATCTGGGGGAATGCCTTCTTTGTCT-TGAATCTTCGCTTTAACGTT 18695
Query 34635 TAAAATTGTGTCTTCGCTCTCCACTTCCACGGTTATCGTTTTACCGGTTAACGTTTTCAC 34694
| || || || || ||||| | || || || ||||| || | || |||||
Sbjct 18694 TTCGATGGTATCGGATGGTTCAACTTCTAAAGTAATAGTCTTACCCGTGAGAGTCTTCAC 18635
Query 34695 AAAAATCTGCATGTTGA 34711
||||||||||| ||||
Sbjct 18634 GAAAATCTGCATCTTGA 18618
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 314697912728813
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |