Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Melitaea_20cinxia_20[genbank_20GCA_5F000716385.1_202014-07-09] 8,261 sequences; 389,907,520 total letters Query= NC_028491.1 Length=98392 Score E Sequences producing significant alignments: (Bits) Value seq2668 141 6e-29 seq5066 118 7e-22 >seq2668 Length=134947 Score = 141 bits (156), Expect = 6e-29 Identities = 195/273 (71%), Gaps = 0/273 (0%) Strand=Plus/Minus Query 47093 CATCCTCAATATTCATCTGAAGCTGCTCGTTTGAACACTTTTAAAGATTGGCCTCGTGGT 47152 || |||| ||| | || || || ||||| || ||| ||||| |||||||| || || Sbjct 31173 CACCCTCGGTATGCTTCAGAGGCCGCTCGATTACGCACCTTTAAGGATTGGCCCCGCAGT 31114 Query 47153 TTGCGTCAGAGACCAAAAGAGTTAGCGGACGCGGGCTTCTTTTATACTGGTGAAGGTGAT 47212 || || | ||| | || | || || || ||||| || ||||| ||| | || ||| Sbjct 31113 ATGAAACAAAAACCCGAGGAACTTGCCGAAGCTGGCTTTTTCTATACCGGTAACGGAGAT 31054 Query 47213 AAAACGAAGTGTTATTATTGTGATGGTGGTCTGAGAGATTGGAACGAAGAAGATATACCT 47272 || ||| ||| | ||||||||| || ||||| || |||||| | | || ||| |||| Sbjct 31053 AAGACGTTGTGCTTTTATTGTGACGGGGGTCTTAGGGATTGGGAGAACGACGATGTACCG 30994 Query 47273 TGGGAGGAGCACGCTCGTTGGTTTGATCGTTGTGTCTACGTTAAATTGGTAAAAGGAGAA 47332 |||||| | || ||||||||||| ||||| || | ||| || || | |||||||| Sbjct 30993 TGGGAGCAACATGCTCGTTGGTTCGATCGCTGCGCCTATGTACAACTCGTAAAAGGGCGG 30934 Query 47333 GATTTTATTCAAAGAGTTAAATCGGAAGCGTGT 47365 |||| | |||| ||||| |||||||| ||| Sbjct 30933 GATTACGTACAAAAAGTTATTTCGGAAGCTTGT 30901 Score = 111 bits (122), Expect = 1e-19 Identities = 102/129 (79%), Gaps = 0/129 (0%) Strand=Plus/Minus Query 46868 AACGGATTTTATTATCTTGGAAGAGGTGATGAAGTTCGATGCGCCTTTTGCAAGGTTGAG 46927 ||||||||||||||||| ||| |||| || || || ||||||| || || ||||| || Sbjct 31422 AACGGATTTTATTATCTCGGACGAGGAGACGAGGTGAGATGCGCGTTCTGTAAGGTGGAA 31363 Query 46928 ATCATGCGTTGGGAAGAGGGTGATGATCCTGCCGAAGACCATAAACGTTGGGCTCCTCAG 46987 |||||| |||| || ||||| |||||||| |||||||| | || ||||| || ||| Sbjct 31362 ATCATGAAGTGGGTGGAAGGTGACGATCCTGCGAAAGACCATCAGCGATGGGCGCCGCAG 31303 Query 46988 TGTCCGTTC 46996 ||||| ||| Sbjct 31302 TGTCCTTTC 31294 >seq5066 Length=19128 Score = 118 bits (130), Expect = 7e-22 Identities = 159/219 (73%), Gaps = 2/219 (1%) Strand=Plus/Minus Query 34489 AGACGCAACACCAAATGGAGAGTGCTCTCCTTTTGAATGTTATAATCTGAAAGTGTTCGC 34548 ||||| | ||||| || || || |||||||||||| ||||| ||||| ||||| || Sbjct 19068 AGACGAAGTACCAAGTGAAGTGTAGACTCCTTTTGAATATTATAGTCTGATAGTGTACGA 19009 Query 34549 TCGTCTTCAAGTTGTTTACCGGCAAATATTAAACGCTGTTGGTCCGGCGGCACTCCCTCC 34608 ||||||||||||| || || ||||| || ||||||||||| || || || | || || Sbjct 19008 CCGTCTTCAAGTTGCTTGCCAGCAAAGATCAAACGCTGTTGATCTGGGGGAATGCCTTCT 18949 Query 34609 TTGTCTGTGATCTTTTGTTTTAACGAT-AAAATTGTGTCTTCGCTCTCCACTTCCACGGT 34667 |||||| ||| |||| ||| || | || || || || ||||| | || Sbjct 18948 TTGTCT-TGAATCTTTGCTTTGACATTCTCGATAGTATCCGAAGGTTCAACTTCGAGCGT 18890 Query 34668 TATCGTTTTACCGGTTAACGTTTTCACAAAAATCTGCAT 34706 ||| |||||||| || | ||||| || ||||||||||| Sbjct 18889 TATAGTTTTACCTGTAAGAGTTTTAACGAAAATCTGCAT 18851 Score = 87.8 bits (96), Expect = 1e-12 Identities = 139/197 (71%), Gaps = 2/197 (1%) Strand=Plus/Minus Query 34516 TCCTTTTGAATGTTATAATCTGAAAGTGTTCGCTCGTCTTCAAGTTGTTTACCGGCAAAT 34575 || ||||||||||||||||| || | ||||| | |||||||| || || || ||||| Sbjct 18813 TCTTTTTGAATGTTATAATCGGATAAGGTTCGACCATCTTCAAGCTGCTTTCCAGCAAAA 18754 Query 34576 ATTAAACGCTGTTGGTCCGGCGGCACTCCCTCCTTGTCTGTGATCTTTTGTTTTAACG-A 34634 || ||||| || || || || || | || || |||||| ||| || | ||||||| Sbjct 18753 ATCAAACGTTGCTGATCTGGGGGAATGCCTTCTTTGTCT-TGAATCTTCGCTTTAACGTT 18695 Query 34635 TAAAATTGTGTCTTCGCTCTCCACTTCCACGGTTATCGTTTTACCGGTTAACGTTTTCAC 34694 | || || || || ||||| | || || || ||||| || | || ||||| Sbjct 18694 TTCGATGGTATCGGATGGTTCAACTTCTAAAGTAATAGTCTTACCCGTGAGAGTCTTCAC 18635 Query 34695 AAAAATCTGCATGTTGA 34711 ||||||||||| |||| Sbjct 18634 GAAAATCTGCATCTTGA 18618 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 314697912728813