Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Melitaea_20cinxia_20[genbank_20GCA_5F000716385.1_202014-07-09] 8,261 sequences; 389,907,520 total letters Query= NC_028636.1 Length=135952 Score E Sequences producing significant alignments: (Bits) Value seq566 237 1e-57 seq5066 158 1e-33 >seq566 Length=99533 Score = 237 bits (262), Expect = 1e-57 Identities = 784/1209 (65%), Gaps = 20/1209 (2%) Strand=Plus/Minus Query 53362 CCTAAACCCTTGTGTATCGCATTCAAAAGATCTCCGTTGTCCGCGTCGATTTCCCACGCA 53421 |||| ||| ||| || || || | ||||||||||| || ||||| |||||||| || Sbjct 71467 CCTAGCCCCATGTTCATTGCGTTGAGTAGATCTCCGTTATCAGCGTCTATTTCCCAGGCG 71408 Query 53422 AACAATCCACCGAGATCGTTTTCAATCACATACTGGCCCTTGTCTAGCACGGAATCGAT- 53480 || | || ||||| | || | |||| || | ||| || || | ||||| || | Sbjct 71407 AATAGACCGCCGAGTTTATTATTTCTCACGTATTTGCCTTTTTCGATGACGGA-TCTAGC 71349 Query 53481 GCTGTCGTAACTGATTAAATCGCCAGAGTTTTTATTGAATACAAACGCTGCTTTGGCTGT 53540 | |||||||| | | | || |||| | |||| || | | ||||| ||| Sbjct 71348 GTTGTCGTAAGTTACAAGGTCCCCAGTGGACGGTCTGAACACGTATGGTGCTTGTGCTAC 71289 Query 53541 AGTGTCGTAAGTGTAATCGTATTGA---TGGCCAATTTT-TTCGTCAATTTTTCGGTAAT 53596 | |||||| | | || ||| ||| |||||| |||| | |||| || ||||| Sbjct 71288 GTTATCGTAATGGAATTCCCATTTTCCCTGGGCAATTTCGTTCG-CTATTTCTCTGTAAT 71230 Query 53597 CAACGACTCCGTCTTCCCATGTGCCTGTAACAGGGCCAGTTGCCACACCGGTGAACGGAT 53656 | || || ||||||| ||| || || | || || || ||||| || ||||| |||| Sbjct 71229 CGACTACACCGTCTTGCCAGGTTCCCTTGACTGGTCCTGTTGCGTTGCCAGTGAAGGGAT 71170 Query 53657 TGTCATCGCGGTAGCCGCTCACTCCAGTCCAACCGCGCCCGTACATCGCCACTCCGAGAA 53716 ||| || ||| ||| || |||||||| || || |||||||| |||||||||| | Sbjct 71169 TGTTGTCCTCGTACCCGTGGACGCCAGTCCAGCCACGTCCGTACATTGCCACTCCGACGA 71110 Query 53717 CAATTTTTTCCTGTTGAACTTTTTGTTCGAGCAACGCGCGCACGGCAACATCGGCCGTGT 53776 || || | | | | || ||| | | ||| || ||| ||||| || | Sbjct 71109 TGATCTTCTTCGGGTTCACACCTTGAGCTAACAAGTATTTTACACCAAAATCGGTAGTAT 71050 Query 53777 AATGCTCGCTGGGAGACCAAACCGGCGCGTAAATCGCCGTTTGATGTCCCAAATCGGTGT 53836 || || | ||| ||| | || ||||| | | || || || |||| | | || Sbjct 71049 AAGTTTCTTTAGGATTCCATTCTGGAGCGTATAAAGGTGTCTGGTGCCCCAGAGTGTCGT 70990 Query 53837 TTGACCAAGCGCCTTTAAAATCATACGACATTaaaaaaaTTCTGTCCAGGTATTGTTGGG 53896 | |||||||| || || || ||||| ||| | ||||| ||||| ||| | ||||| Sbjct 70989 TAGACCAAGCTCCCTTGAAGTCATAACTCATCAGGAAAATGTGGTCCATGTAGTTTTGGG 70930 Query 53897 CGTCGCGATAGTTGACGACCGCAATTTTATCATTGCCTGCACTGATTGCGCTAGTCAACT 53956 | | || |||| || ||| ||||| || || || ||||| || ||||| | Sbjct 70929 CTTTGCTGTAGTCAACTACCTGGATTTTGTCCCAACCAGCGCTGATAGCTGATGTCAATT 70870 Query 53957 CGAACTTTCGTCCAGTTTCCAATTCCAA--TTGATCCAACATTTGTCGCAACTCTTTTAA 54014 || | || | |||||| | | || || || | ||||| || | || || Sbjct 70869 CGTATTTCCTACCAGTTG--AGTGAGAAAGTTCGTCAAGCATTTCACGGAGTTCCTT--- 70815 Query 54015 CAACACCACAT--ACGTTAAACT-ATCTTTTTGAGGATCGCCCACGGACGGATTGGCACC 54071 || | | |||| || | | | | || || || | || || || || || Sbjct 70814 ---CATGAGGTTGACGTAAACATCACCGTCTTCTGGGCTTCCAAAGGTAGGGTTAGCGCC 70758 Query 54072 GTTTCCGCCAGGAAACTCCCAATCGACGTCGACACCATCAAAAAATTTCCACGTCAATAG 54131 || || ||||| ||||||||||| | ||| |||||||| ||||||||||| || || Sbjct 70757 TTTACCACCAGGGAACTCCCAATCAATGTCAACACCATCGAAAAATTTCCAGGTTTGAAG 70698 Query 54132 GAATTCGCGCACGGAATCCACAAACACTTTGCGTTTGGAAGAATCGTGGAAATGGTAAAA 54191 ||| || || || || || || | | |||| || ||| | | || Sbjct 70697 GAACTCTTTGACTGAGTCAACGAAGCGAGTTCTCTTGGTCTTGTCAGTAAAAAAGAAGAA 70638 Query 54192 CGGATCCGATAACGTCCAACCGCCGATTGACGGTAATACTTTGACGTTGGGATTCGCTTT 54251 |||||| | || ||||| || || || || || | | || | || || |||||| Sbjct 70637 CGGATCAGCCAATGTCCATCCTCCAATAGAAGGAAGAATCTTCAGGTCAGGTCTCGCTTG 70578 Query 54252 TTTCACGGCCATAATCTGTCCAAAATTGCCTTTATACGGTTCGTTCCAGGCGGAGACGCC 54311 ||||| | ||| | || || || |||||||| || ||||| ||||| | || | || Sbjct 70577 TTTCAATGACATCAGTTGACCGAAGTTGCCTTTGTATGGTTCATTCCAAGATGATAGACC 70518 Query 54312 TTTTTGCGGTTTTTGCACCGCCGCCCAAGGATCATGGATGGCTACTTTAAAATCCGACCG 54371 ||| || ||||| || | || ||||| ||||| || || | ||||||||| ||| || Sbjct 70517 TTTCTGAGGTTTCTGTAAGGCTGCCCAGGGATCGTGAATAGATACTTTAAAGTCCTCGCG 70458 Query 54372 GCCAGCGCAAGATCTTTGTAGAGCTTCAAAACTGCCCGGTATAGTTTTTAAACTGTCATT 54431 ||| |||||| | ||| || |||| ||||| || || ||||||||||| || Sbjct 70457 ACCACTGCAAGAACGTTGAAGTGCTTGGAAACTTCCTTCGATTTCCTTTAAACTGTCGTT 70398 Query 54432 TATTCCGTCGCCGCCGCAAATTGGCACAAAACCGTACAAAAGATGCGTCAAATTAGGCAC 54491 || || || || || |||||||| | |||||| |||| ||| || || | ||| || | Sbjct 70397 AATGCCATCTCCACCACAAATTGGAATAAAACCATACAGAAGGTGAGTTAGATTGGGAAT 70338 Query 54492 GGGCACTTTGTCCATTGGAAAATTTCGTCCGTACACTCCCCATTCTACAAAATAGGCGGC 54551 || || || | || || || | ||| || |||||||| |||||||| ||| | Sbjct 70337 TGGTACGCGATCGACGGGGAACTTCCTCGGGTAAACGCCCCATTCCACAAAATAAGCGCC 70278 Query 54552 CACAACTTT 54560 || ||||| Sbjct 70277 AACTACTTT 70269 >seq5066 Length=19128 Score = 158 bits (174), Expect = 1e-33 Identities = 173/230 (75%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 26988 ATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTCC 27047 |||||||| || || |||||||| || || || |||| || || ||||| ||||| || Sbjct 18851 ATGCAGATTTTCGTTAAAACTCTTACAGGTAAAACTATAACGCTCGAAGTTGAACCTTCG 18910 Query 27048 GACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCAA 27107 || | || |||| |||||| ||| |||||||||||||||||||| || || |||||| Sbjct 18911 GATACTATCGAGAATGTCAAAGCAAAGATTCAAGACAAAGAAGGCATTCCCCCAGATCAA 18970 Query 27108 CAGCGTTTAATATACGCCGGCAAACAATTGGAAGACAGTTCGACCGTTTCCGATTACAAC 27167 |||||||| || | || ||||| ||| | |||||| || || | || || || || Sbjct 18971 CAGCGTTTGATCTTTGCTGGCAAGCAACTTGAAGACGGTCGTACACTATCAGACTATAAT 19030 Query 27168 ATTCAAAAGGAGTCGACCTTACATTTGGTTTTGCGTTTGCGGGGTGGCAT 27217 |||||||||||||| || | || ||||| | ||| | || ||||| || Sbjct 19031 ATTCAAAAGGAGTCTACACTTCACTTGGTACTTCGTCTCCGTGGTGGTAT 19080 Score = 154 bits (170), Expect = 1e-32 Identities = 172/230 (75%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 26988 ATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTCC 27047 |||||||| || || || ||||| || || ||| |||||||| | ||||| ||||| ||| Sbjct 18623 ATGCAGATTTTCGTGAAGACTCTCACGGGTAAGACTATTACTTTAGAAGTTGAACCATCC 18682 Query 27048 GACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCAA 27107 || | || || | || ||| || |||||||||||||||||||| || || ||||| Sbjct 18683 GATACCATCGAAAACGTTAAAGCGAAGATTCAAGACAAAGAAGGCATTCCCCCAGATCAG 18742 Query 27108 CAGCGTTTAATATACGCCGGCAAACAATTGGAAGACAGTTCGACCGTTTCCGATTACAAC 27167 || ||||| || | || || || || | ||||| || ||| | |||||||| ||| Sbjct 18743 CAACGTTTGATTTTTGCTGGAAAGCAGCTTGAAGATGGTCGAACCTTATCCGATTATAAC 18802 Query 27168 ATTCAAAAGGAGTCGACCTTACATTTGGTTTTGCGTTTGCGGGGTGGCAT 27217 |||||||| || || ||||||||| ||||| | || | || ||||| || Sbjct 18803 ATTCAAAAAGAATCTACCTTACATCTGGTTCTCCGGCTTCGTGGTGGAAT 18852 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 434873489238720