Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Melitaea_20cinxia_20[genbank_20GCA_5F000716385.1_202014-07-09] 8,261 sequences; 389,907,520 total letters Query= NC_029304.1 Length=111246 Score E Sequences producing significant alignments: (Bits) Value seq5066 86.0 4e-12 >seq5066 Length=19128 Score = 86.0 bits (94), Expect = 4e-12 Identities = 160/235 (68%), Gaps = 10/235 (4%) Strand=Plus/Plus Query 27787 AAAATGCAAATTTTTGTGAAAACTCTTACTGGGAAATGTATTACAATTGATGTCGAAAGC 27846 || ||||| ||||| ||||| ||||| || || || |||||| | || || ||| Sbjct 18620 AAGATGCAGATTTTCGTGAAGACTCTCACGGGTAAGACTATTACTTTAGAAGTTGAACCA 18679 Query 27847 ACCGACGATGTACAATCG-----GTCAAACAAAAAATAGCCGACAAAGAAGGTGTTCCGA 27901 |||| ||| |||| || ||| || || ||||||||||| |||| Sbjct 18680 TCCGA-----TACCATCGAAAACGTTAAAGCGAAGATTCAAGACAAAGAAGGCATTCCCC 18734 Query 27902 TGGAGCAGCAACGGTTAATTTTTGCCGGAAAACAATTGGACGACGAACGCAGCTTGTCCG 27961 || |||||||| || |||||||| ||||| || | || || | || | ||| |||| Sbjct 18735 CAGATCAGCAACGTTTGATTTTTGCTGGAAAGCAGCTTGAAGATGGTCGAACCTTATCCG 18794 Query 27962 ATTACAACATCCAAAAAGAGAGCACTTTGCATTTGGTTTTGCGTTTGCGTGGCGG 28016 |||| ||||| |||||||| || || ||| ||||| | || | ||||| || Sbjct 18795 ATTATAACATTCAAAAAGAATCTACCTTACATCTGGTTCTCCGGCTTCGTGGTGG 18849 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 355826571439947