Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Melitaea_20cinxia_20[genbank_20GCA_5F000716385.1_202014-07-09] 8,261 sequences; 389,907,520 total letters Query= NC_029692.1 Length=362276 Score E Sequences producing significant alignments: (Bits) Value seq5066 154 3e-32 seq1291 95.1 3e-14 >seq5066 Length=19128 Score = 154 bits (170), Expect = 3e-32 Identities = 169/225 (75%), Gaps = 0/225 (0%) Strand=Plus/Minus Query 210893 ACGAAGTCTTAGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGT 210952 |||||| | || || || || | || || |||||||| ||||||||||| | | ||| Sbjct 18844 ACGAAGCCGGAGAACCAGATGTAAGGTAGATTCTTTTTGAATGTTATAATCGGATAAGGT 18785 Query 210953 CCTTCCATCTTCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCC 211012 | |||||||| |||||||| || || || || | ||||| || || || |||| || Sbjct 18784 TCGACCATCTTCAAGCTGCTTTCCAGCAAAAATCAAACGTTGCTGATCTGGGGGAATGCC 18725 Query 211013 TTCCTTGTCCTGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAG 211072 ||| ||||| || ||||| ||| |||||||||||||| || || |||||| || | Sbjct 18724 TTCTTTGTCTTGAATCTTCGCTTTAACGTTTTCGATGGTATCGGATGGTTCAACTTCTAA 18665 Query 211073 AGTGATCGTCTTTCCCGTGAGAGTCTTTACAAACACCTGCATTTT 211117 ||| || ||||| |||||||||||||| || || | |||||| || Sbjct 18664 AGTAATAGTCTTACCCGTGAGAGTCTTCACGAAAATCTGCATCTT 18620 >seq1291 Length=99781 Score = 95.1 bits (104), Expect = 3e-14 Identities = 96/125 (77%), Gaps = 0/125 (0%) Strand=Plus/Minus Query 210993 TGTTGGTCAGGAGGAACTCCTTCCTTGTCCTGGATCTTTTGTTTCACGTTTTCGATGGTG 211052 || ||||| ||||| | ||| || ||||| || || || ||||| ||||||||||| Sbjct 93337 TGCTGGTCGGGAGGGATTCCCTCTTTGTCTTGAATTTTAGCCTTCACATTTTCGATGGTA 93278 Query 211053 TCAGAGCTTTCAACCTCGAGAGTGATCGTCTTTCCCGTGAGAGTCTTTACAAACACCTGC 211112 ||||| || ||||| |||||||| ||||| |||||||| ||||| || || | |||| Sbjct 93277 TCAGACGGCTCGACCTCAAGAGTGATGGTCTTGCCCGTGAGGGTCTTGACGAAAATCTGC 93218 Query 211113 ATTTT 211117 || || Sbjct 93217 ATCTT 93213 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1159029310643265