Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Melitaea_20cinxia_20[genbank_20GCA_5F000716385.1_202014-07-09] 8,261 sequences; 389,907,520 total letters Query= NC_029996.1 Length=134272 Score E Sequences producing significant alignments: (Bits) Value seq272 114 1e-20 >seq272 Length=55764 Score = 114 bits (126), Expect = 1e-20 Identities = 401/611 (66%), Gaps = 34/611 (6%) Strand=Plus/Minus Query 14410 CGAGCAAAAAATTGAATTTGACGACATACTGCTAGACGAAGACGGCGGTGTGCCGGTGAT 14469 ||| ||| ||||| ||||| || || | || || || || || | || || || Sbjct 19496 CGAACAAGAAATTCAATTTCCGGATATTATTCTCGATGATGATAAAGGAATACCTGTTAT 19437 Query 14470 AATTTTGACTGAATGTAACTTGCTGGATATGATAATTTTTAA--AAATAAA-------GA 14520 |||| | ||||||| || |||||||| | || |||||| | ||| ||| || Sbjct 19436 AATTCTAACTGAATTAAATTTGCTGGACAAAATTATTTTTCATAAAACAAACGACGATGA 19377 Query 14521 --AAATG----CTTC---TTTTAGCAAATTTAATTCAACAATGCAGTGTCCGCTATTTTT 14571 || || || | ||| | ||||| || ||||||||| | ||||| |||||||| Sbjct 19376 TGAAGTGTCGTCTGCCAGTTTCAATAAATTCAAATCAACAATGGATTGTCCACTATTTTT 19317 Query 14572 GCTGAATAACATTGAACTGGCGCAGTCGATTGGGTATTACTATACTTTGGACTCTTTCAA 14631 | |||| ||| || | | ||||| || || | || || ||| | || ||| Sbjct 19316 GTTGAACGACAAAGATGTCAGTGAATCGATCGGCTACTTTTACACATTGAATGTTTACAA 19257 Query 14632 ACAAATGTTGGATCACCACAATTTT-ACGGAGCCTCGCACACGCAAACCTTTTTATGGGG 14690 |||| ||||||| | ||| | || ||||| || ||||| | ||| ||| |||| | Sbjct 19256 ACAATTGTTGGAGAAT-ACAGTAAAGACAGAGCCGCGTACACGAAGACCATTTCATGGTG 19198 Query 14691 GATTAATTTTGACTGAA-ACCCAGA--AATTTGATAGCTACAACGATTACGTGGTGGCGG 14747 | || | | || | | |||| ||||||| | || ||||| ||| | | | | Sbjct 19197 GCCTAGTACT---TGTAGATTCAGATGAATTTGACAAGTATAACGACTACATTTTATCAG 19141 Query 14748 CGACATATTTTGACGGAAAGAAGGTGAACTACAACAGCGGTTTGTTTTACTATGTTCTGT 14807 | || |||||||| || || ||||| ||||| | || || ||||| | || |||| Sbjct 19140 CAACGTATTTTGAATCCAAAAAAGTGAATTACAATATTGGATTATTTTATTTCGTCCTGT 19081 Query 14808 GGAAA--TTGTGCAGCGCCAAAAAGTGGATGAACCAAAATGTGCTTGACCAATTTTGGAA 14865 ||||| || || || | || || |||||| | | ||||| | || |||| ||| Sbjct 19080 GGAAAAATTCTG-AGAGAAAAGAA-TGGATGGATAATAATGTTGTGGAAAGATTTAAGAA 19023 Query 14866 ATACGTTAAACTTCGCTTACAAAAC-ACTACATGCAAGCTAGGTCTTTCGTCGCTTCCTA 14924 ||| || | | || | |||||| || | ||| || | ||| | || || | || Sbjct 19022 ATATGTCATGCGACGTAT-CAAAACGACAATATGTAAAATTGGTTTGTCATCATTACCGC 18964 Query 14925 TGGACCCGCCCATGAAAACATCACTACTAACAGCCCTGTGGTACTGTGTTGAGTTGTCGT 14984 | || || || ||||||||||| ||||| || |||||||||| ||||| || || | Sbjct 18963 TAGATCCCCCTGAAAAAACATCACTGCTAACTGCGTTGTGGTACTGCGTTGAATTATCTT 18904 Query 14985 CCGACATATTT 14995 | | |||||| Sbjct 18903 C--ATATATTT 18895 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 429502352946293