Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Melitaea_20cinxia_20[genbank_20GCA_5F000716385.1_202014-07-09]
8,261 sequences; 389,907,520 total letters
Query= NC_029997.1
Length=105667
Score E
Sequences producing significant alignments: (Bits) Value
seq5066 149 4e-31
>seq5066
Length=19128
Score = 149 bits (164), Expect = 4e-31
Identities = 161/211 (76%), Gaps = 2/211 (1%)
Strand=Plus/Plus
Query 23610 AATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCAC 23669
||||||||||||||||||||| || || || ||||| || || ||||||||||| | |
Sbjct 18850 AATGCAGATTTTCGTTAAAACTCTTACAGGTAAAACTATAACGCTCGAAGTTGAACCTTC 18909
Query 23670 GGACACTGTTGA-AATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATC 23728
||| ||| | || ||| | ||| | ||| ||| ||||||||||| | || |||||||
Sbjct 18910 GGATACTATCGAGAATGTCAAAGC-AAAGATTCAAGACAAAGAAGGCATTCCCCCAGATC 18968
Query 23729 AACAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACA 23788
|||||||||| || ||||| ||||| ||||| ||||||| || || || || || |
Sbjct 18969 AACAGCGTTTGATCTTTGCTGGCAAGCAACTTGAAGACGGTCGTACACTATCAGACTATA 19028
Query 23789 ACATACAAAAAGAGTCCACATTACATTTAGT 23819
| || ||||| ||||| ||| | || || ||
Sbjct 19029 ATATTCAAAAGGAGTCTACACTTCACTTGGT 19059
Score = 129 bits (142), Expect = 4e-25
Identities = 167/231 (72%), Gaps = 0/231 (0%)
Strand=Plus/Plus
Query 23608 AAAATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCC 23667
|| |||||||||||||| || || |||||||| || || || ||| | |||||||| |
Sbjct 18620 AAGATGCAGATTTTCGTGAAGACTCTCACGGGTAAGACTATTACTTTAGAAGTTGAACCA 18679
Query 23668 ACGGACACTGTTGAAATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGAT 23727
| || || | |||| | ||| || ||| ||||||||||| | || ||||||
Sbjct 18680 TCCGATACCATCGAAAACGTTAAAGCGAAGATTCAAGACAAAGAAGGCATTCCCCCAGAT 18739
Query 23728 CAACAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTAC 23787
|| || ||||| || ||||| || || || || ||||| | || || ||| ||||||
Sbjct 18740 CAGCAACGTTTGATTTTTGCTGGAAAGCAGCTTGAAGATGGTCGAACCTTATCCGATTAT 18799
Query 23788 AACATACAAAAAGAGTCCACATTACATTTAGTTTTAAGGTTGCGAGGAGGA 23838
||||| |||||||| || || |||||| | ||| | || | || || |||
Sbjct 18800 AACATTCAAAAAGAATCTACCTTACATCTGGTTCTCCGGCTTCGTGGTGGA 18850
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 337975568876588
| Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |