Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Melitaea_20cinxia_20[genbank_20GCA_5F000716385.1_202014-07-09] 8,261 sequences; 389,907,520 total letters Query= NC_030230.1 Length=372707 Score E Sequences producing significant alignments: (Bits) Value seq5066 136 9e-27 seq8261 129 1e-24 >seq5066 Length=19128 Score = 136 bits (150), Expect = 9e-27 Identities = 165/225 (73%), Gaps = 0/225 (0%) Strand=Plus/Minus Query 225492 ACGAAGTCTCAGGACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGT 225551 |||||| | || || || || | || ||||||||||| | || ||||||| || || Sbjct 18844 ACGAAGCCGGAGAACCAGATGTAAGGTAGATTCTTTTTGAATGTTATAATCGGATAAGGT 18785 Query 225552 TCTCCCATCTTCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACC 225611 || |||||||| |||||||| ||||| || || | ||||| || || || ||||| || Sbjct 18784 TCGACCATCTTCAAGCTGCTTTCCAGCAAAAATCAAACGTTGCTGATCTGGGGGAATGCC 18725 Query 225612 TTCCTTGTCTTGGATCTTTTGCTTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAA 225671 ||| |||||||| ||||| || || ||||||||| || || | ||| || ||||| Sbjct 18724 TTCTTTGTCTTGAATCTTCGCTTTAACGTTTTCGATGGTATCGGATGGTTCAACTTCTAA 18665 Query 225672 CGTGATCGTCTTGCCCGTCAAAGTTTTTATGAACACTTGCATTTT 225716 || || ||||| ||||| | ||| || | ||| | ||||| || Sbjct 18664 AGTAATAGTCTTACCCGTGAGAGTCTTCACGAAAATCTGCATCTT 18620 >seq8261 Length=15171 Score = 129 bits (142), Expect = 1e-24 Identities = 133/174 (76%), Gaps = 0/174 (0%) Strand=Plus/Plus Query 7552 CAACTTTACAACGTTATTATTACGGCGCATGCCTTTGTTATGATTTTCTTTTTTGTTATG 7611 ||| ||||||| ||| |||| || ||||| ||| |||| ||||| ||| | ||||| Sbjct 1603 CAAATTTACAATACTATCGTTACTGCTCATGCTTTTATTATAATTTTTTTTATAGTTATA 1662 Query 7612 CCGGTTATGATAGGCGGTTTCGGAAATTGATTCGTTCCTTTAATGATTGGTGCTCCTGAT 7671 || |||| || || || || ||||||||||| |||| ||||| | || ||||||||| Sbjct 1663 CCTATTATAATTGGAGGATTTGGAAATTGATTAATTCCATTAATATTAGGAGCTCCTGAT 1722 Query 7672 ATGGCTTTTCCAAGGCTTAACAATATAAGTTTTTGATTACTACCGCCTTCCTTA 7725 ||||| ||||| | | || |||||||| ||||||||||| || || || ||| Sbjct 1723 ATGGCATTTCCCCGAATAAATAATATAAGATTTTGATTACTTCCCCCATCATTA 1776 Score = 84.2 bits (92), Expect = 5e-11 Identities = 79/101 (78%), Gaps = 0/101 (0%) Strand=Plus/Minus Query 370672 TTCAGGATGACCAAAAAATCAGAATAAATGTTGATAAAGGATAGGATCGCCTCCGCCTGA 370731 ||| ||||| ||||||||||| |||| |||||||| | |||||||| ||||| || | Sbjct 2175 TTCTGGATGGCCAAAAAATCAAAATAGGTGTTGATATAAAATAGGATCTCCTCCTCCGGC 2116 Query 370732 TGGATCAAAAAAGCTAGTATTAAAATTTCTATCAGTTAAAA 370772 ||||||||||| || |||| ||| | ||| ||||||| Sbjct 2115 AGGATCAAAAAATGAGGTGTTAATATTACGATCGGTTAAAA 2075 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1192404977653134