Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Melitaea_20cinxia_20[genbank_20GCA_5F000716385.1_202014-07-09] 8,261 sequences; 389,907,520 total letters Query= NC_030240.1 Length=128058 Score E Sequences producing significant alignments: (Bits) Value seq566 181 9e-41 >seq566 Length=99533 Score = 181 bits (200), Expect = 9e-41 Identities = 625/963 (65%), Gaps = 15/963 (2%) Strand=Plus/Plus Query 109140 CGCGTACTTTGTCGAATGGGGTGTGTACGGCCGCAATTTTCCCGTGGACAAAGTGCCGTT 109199 ||| || ||||| |||||||| || ||| | || || ||||| || || || | Sbjct 70280 CGCTTATTTTGTGGAATGGGGCGTTTACCCGAGGAAGTTCCCCGTCGATCGCGTACCAAT 70339 Query 109200 GCCCAATTTATCGCATTTGCTGTACGGTTTTATTCCAATATGTGGCGGCGACGGCATCAA 109259 |||||| || | || | ||||| |||||||||||||| ||||| || || ||||| || Sbjct 70340 TCCCAATCTAACTCACCTTCTGTATGGTTTTATTCCAATTTGTGGTGGAGATGGCATTAA 70399 Query 109260 CGACGCCCTCAAAACCATTCCCGGCAGTTTTGACGCTTTGCAACGATCGTGCCGCGGTCG 109319 |||| | || || || ||||| | || | ||||| || ||| | ||||| Sbjct 70400 CGACAGTTTAAAGGAAATCGAAGGAAGTTTCCAAGCACTTCAACGTTCTTGCAGTGGTCG 70459 Query 109320 CGACGATTTCAAAGTGTCCATACACGACATTTGGGCCGCGGTGCAAAAACCGCAAAAAGG 109379 ||| || || ||||| || || ||||| ||||| || | || ||||| || ||||| Sbjct 70460 CGAGGACTTTAAAGTATCTATTCACGATCCCTGGGCAGCCTTACAGAAACCTCAGAAAGG 70519 Query 109380 CGTGACCGCGTGGAACGAGCCGTACAAAGGCAACTTTGGACAATTGATGGCGGCCAAATT 109439 | | | ||||| || || |||||||||||||| || ||| ||||| | ||| Sbjct 70520 TCTATCATCTTGGAATGAACCATACAAAGGCAACTTCGGTCAACTGATGTCATTGAAACA 70579 Query 109440 GGCAAATCCTCACGTTAAAATTCTACCGTCCATAGGCGGGTGGACGTTGTCGGACCCGTT 109499 || | ||| || | || ||||| || || || || || ||||| ||| | || ||||| Sbjct 70580 AGCGAGACCTGACCTGAAGATTCTTCCTTCTATTGGAGGATGGACATTGGCTGATCCGTT 70639 Query 109500 -TTATTTTATGCACGATTCGGCGAAAAGAGCCACATTCGTTGAATCGGTGCGCGAATTTT 109558 || |||| | | || | | || ||| | |||||||| || || || || Sbjct 70640 CTTCTTTTTTAC-TGACAAGACCAAGAGAACTCGCTTCGTTGACTCAGTCAAAGAGTTCC 70698 Query 109559 TACAAGTGTGGAAATTCTTTGACGGCGTCGACATTGATTGGGAGTTTCCGGGCGGCAAGG 109618 | ||| |||||||| || || || || ||||||||||||||||| || || || || | Sbjct 70699 TTCAAACCTGGAAATTTTTCGATGGTGTTGACATTGATTGGGAGTTCCCTGGTGGTAAAG 70758 Query 109619 GTGCCAATCCGAGTCTCGGCGACGCAACGCGCGACAGCAAAACGTACATTGCGTTGTTAA 109678 | || || || | | | || || | ||| | | ||| | | | | Sbjct 70759 GCGCTAACCCTACCTTTG--GAAGC-CCAGAAGACGGTGATGTTTACGTCAACCTCATGA 70815 Query 109679 AAGAGTTGCGCGCCATGTTGGACG-ACTTGCAAACGGCCACCAACAAAACGTACGAATTG 109737 | || | || | ||| | |||| |||| | || | || | | ||||||||| Sbjct 70816 AGGAACTCCGTGAAATGCTTGACGAACTTTCTCAC-TCAACTGGTAGGAAATACGAATTG 70874 Query 109738 ACGAGCGCCATTAGCGCCGGTTACGATAAAATTGACGTGGTCGATTACGCGTCGGCGCAA 109797 || || || ||||| |||| || ||||| | || || || ||| || ||| Sbjct 70875 ACATCAGCTATCAGCGCTGGTTGGGACAAAATCCAGGTAGTTGACTACAGCAAAGCCCAA 70934 Query 109798 CAATATTTGGACAAAATATTTTTAATGACATACGATTTCAAAGGCGCTTGGTCAAAC-AC 109856 | || ||||| | || || | |||| || || ||||| || |||||||| ||| || Sbjct 70935 AACTACATGGACCACATTTTCCTGATGAGTTATGACTTCAAGGGAGCTTGGTCTAACGAC 70994 Query 109857 GGACTTAGGCTATCACACGACTGTGTACGCGCCCACGTGGAATCCAAACGAATTGTACAC 109916 || ||| | || || || | ||||| || |||||||| || ||| || || Sbjct 70995 ACTCTGGGGC-ACCAGACACCTTTATACGCTCCAGAATGGAATCCTAAAGAAACTTATAC 71053 Query 109917 GACCGATGTGGCGGTCAAAGAGCTGTTCAAACAAAAAGTGTCGCCTaaaaaaaTTATAAT 109976 |||||| | | || ||| | |||| ||| ||| || || || || || | Sbjct 71054 TACCGATTTTGGTGTAAAATACTTGTTAGCTCAAGGTGTGAACCCGAAGAAGATCATCGT 71113 Query 109977 TGGCGTAGCGATGTACGGCCGCGGCTGGACGGGCGTCGTGCACG---CCGACGACGCGAA 110033 || || || |||||||| || |||||||| |||||| |||| ||| ||| || Sbjct 71114 CGGAGTGGCAATGTACGGACGTGGCTGGACTGGCGTC---CACGGGTACGAGGACAACAA 71170 Query 110034 TCCGTTTTTGGGCATCGCCTCCGGTCCCGTGGAAGGCACTTGGGAAAACGGCGTGGTGGA 110093 ||| || |||| ||| | || || || | || || ||| || |||| || || || Sbjct 71171 TCCCTTCACTGGCAACGCAACAGGACCAGTCAAGGGAACCTGGCAAGACGGTGTAGTCGA 71230 Query 110094 CTA 110096 || Sbjct 71231 TTA 71233 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 409619554966599