Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Melitaea_20cinxia_20[genbank_20GCA_5F000716385.1_202014-07-09] 8,261 sequences; 389,907,520 total letters Query= NC_030656.1 Length=133492 Score E Sequences producing significant alignments: (Bits) Value seq1957 100 2e-16 >seq1957 Length=467265 Score = 100 bits (110), Expect = 2e-16 Identities = 79/95 (83%), Gaps = 0/95 (0%) Strand=Plus/Minus Query 5037 TTAGTTAAATCAACTTCTTCAACAGTCCAAAACGACGCTTCCGCTTTTTTGTACATAGAC 5096 |||| || |||||||||||||||||||||||| || || || |||||||||||||| | Sbjct 418459 TTAGATAGATCAACTTCTTCAACAGTCCAAAAGGAGGCCTCTGCTTTTTTGTACATTTGC 418400 Query 5097 CAAATATCAGGATACTGAATCGGAAGTATGACAAA 5131 || |||||||| ||||| || || | ||| ||||| Sbjct 418399 CATATATCAGGGTACTGGATGGGGAATATAACAAA 418365 Score = 100 bits (110), Expect = 2e-16 Identities = 108/143 (76%), Gaps = 0/143 (0%) Strand=Plus/Minus Query 4842 TACATTTCAGAATGTATATTTTCTATAGCAATCTGAAATCCGTAAAAGCATCTAGCTTCT 4901 ||||| || || |||| |||||| |||||||||||||| || || || || ||||||||| Sbjct 419048 TACATCTCTGAGTGTACATTTTCCATAGCAATCTGAAAGCCATAGAAACACCTAGCTTCT 418989 Query 4902 GTTACTTGAACTTCGTTACAAAATCTTTCTACTAAGTTTTCGTTTACTATACCGTCACTG 4961 || || || ||||| | |||| | ||| || | ||| || || ||||| || || Sbjct 418988 GTCACCTGCACTTCTTGTGAAAAGCGTTCCACAAGGTTCTCATTGACTATGCCATCTGAT 418929 Query 4962 GCTGCAAAAAACGCCAAAACATG 4984 || ||||| ||||| || ||||| Sbjct 418928 GCAGCAAAGAACGCTAATACATG 418906 Score = 98.7 bits (108), Expect = 8e-16 Identities = 164/233 (70%), Gaps = 3/233 (1%) Strand=Plus/Minus Query 4561 AATGCAAACCTTCGTCTCTGCTAATCAGTTCGTTAGAAAACGTTAATCCGGGCATTAAAC 4620 ||| ||||||| | || || |||||| || || || || ||||| ||||| | | Sbjct 419641 AATACAAACCT-CATCCCTTGAAATCAGCTCATTGCTGAAAGTCAATCCTGGCATAAGTC 419583 Query 4621 CTCTCTTTTTAAGCCAAAATATAGCGGCAAATGACCCAGAAAAGAATATGCCTTCTACGG 4680 | ||||| || ||||| ||||| | ||||| ||||| |||||||||||||| || | Sbjct 419582 CCCTCTTCTTGAGCCAGAATATTGATGCAAAGCTTCCAGAGAAGAATATGCCTTCAACTG 419523 Query 4681 CGGCAAACGCTACTAATCGGGACCCGAACG-AGCTGGCTTTGTCTTTAATCCATTTTAAT 4739 | ||||| ||||| | || ||||| | || | | ||| | |||||||| | Sbjct 419522 CAGCAAAAGCTACAATACGTTCACCGAAAGTTGCAGTC-TTGCTTGCAATCCATTGCATA 419464 Query 4740 GCCCAGTTAGCTTTTTTCTTAACGCACGGAATTGTGTATATAGCGTTAAATAA 4792 ||||||| ||| || ||||| || || || | ||| | ||||| ||||| || Sbjct 419463 GCCCAGTCAGCCTTCTTCTTTACACAGGGTAATGTCTCAATAGCATTAAACAA 419411 Score = 86.0 bits (94), Expect = 5e-12 Identities = 143/203 (70%), Gaps = 3/203 (1%) Strand=Plus/Plus Query 4561 AATGCAAACCTTCGTCTCTGCTAATCAGTTCGTTAGAAAACGTTAATCCGGGCATTAAAC 4620 ||| ||||||| | || || |||||| || || || || ||||| ||||| | | Sbjct 418605 AATACAAACCT-CATCCCTTGAAATCAGCTCATTGCTGAAAGTCAATCCTGGCATAAGTC 418663 Query 4621 CTCTCTTTTTAAGCCAAAATATAGCGGCAAATGACCCAGAAAAGAATATGCCTTCTACGG 4680 | ||||| || ||||| ||||| | ||||| ||||| |||||||||||||| || | Sbjct 418664 CCCTCTTCTTGAGCCAGAATATTGATGCAAAGCTTCCAGAGAAGAATATGCCTTCAACTG 418723 Query 4681 CGGCAAACGCTACTAATCGGGACCCGAACG-AGCTGGCTTTGTCTTTAATCCATTTTAAT 4739 | ||||| ||||| | || ||||| | || | | ||| | |||||||| | Sbjct 418724 CAGCAAAAGCTACAATACGTTCACCGAAAGTTGCAGTC-TTGCTTGCAATCCATTGCATA 418782 Query 4740 GCCCAGTTAGCTTTTTTCTTAAC 4762 ||||||| ||| || ||||| || Sbjct 418783 GCCCAGTCAGCCTTCTTCTTTAC 418805 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 427006604245913