Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Melitaea_20cinxia_20[genbank_20GCA_5F000716385.1_202014-07-09] 8,261 sequences; 389,907,520 total letters Query= NC_031033.1 Length=217124 Score E Sequences producing significant alignments: (Bits) Value seq538 697 0.0 seq1957 134 2e-26 >seq538 Length=46986 Score = 697 bits (772), Expect = 0.0 Identities = 1231/1781 (69%), Gaps = 20/1781 (1%) Strand=Plus/Plus Query 76766 TTTATTCTTATCCAATGTAAACTGAATTGGAGAAGATGCGGGTTTTGTACGTAGATAGTA 76825 |||| ||||||| | ||||| ||||| | | || || ||||| ||||||| |||||| Sbjct 41434 TTTAGTCTTATCAACAGTAAATTGAATAGCATTAGCAGCTGGTTTAGTACGTAAATAGTA 41493 Query 76826 CATACCAGTTTTTAGACCCAGACTCCATCCGTAGAAATGCATGCTTGTCAGTTTGGAATA 76885 ||| |||||||| | |||| |||| | |||||||| || ||| | ||| ||| Sbjct 41494 CATTCCAGTTTTCAATCCCATCTTCCAAGCATAGAAATGTATAGATGTTAATTTTCCATA 41553 Query 76886 ACTAGGATCGGCTATATGAATATTCATCGACTGACTTTGATCGATGAAAGCTCCTCTATC 76945 | | || || |||| ||||||||| | |||||||| ||||| || || ||||||||||| Sbjct 41554 ATTTGGTTCAGCTACATGAATATTAAATGACTGACTCTGATCAATAAACGCTCCTCTATC 41613 Query 76946 AGCCGCCATTTTTATAATGGTCTTTTGAGGAATTTCCCAAATAGTTTTGAAAACTTGTTT 77005 || ||||||| |||| | || || | ||||||||||| || ||| | | | | Sbjct 41614 TGCAGCCATTTGTATAGTTGTTTTCACTGAAATTTCCCAAACTGTCTTGTATAAGTCCCT 41673 Query 77006 GATATCATCTGGAAGGTTTG---TATTTTGAATGGAACCACCATC-TGATATAATTGTAT 77061 || | | ||||| ||| ||||||| || || ||| | ||| || || || Sbjct 41674 TATTTTTTTTGGAATCTTTTCAATATTTTGTATAGATCCATTGTTGTGA-ATTATCAAAT 41732 Query 77062 TCTTTATATCATCATTCCACAATTTCCTCTCTGTTAAAACTCTAAGGAGATGAGGATTAA 77121 | || ||||| |||| ||| || | | |||||| || | | ||||||| | |||| Sbjct 41733 TTTTCATATCTTCATCCCATAAGTCAGCTTGGGTTAAATCTGTTAAGAGATGATGGTTAA 41792 Query 77122 CTATTTGAAATTCTCCAGACAATACTCTACGAGTGTAAATATTACTGGTATATGGTTCCA 77181 | | |||||| || ||||| ||||| | || |||||| || ||| ||||||| | Sbjct 41793 CAACTTGAAACTCACCAGATAATACCCGGCGTTGGTAAATGTTTGAAGTAAATGGTTCAA 41852 Query 77182 CAGATTCATTGTTTCCCAAAATTTGAGCAGTAGAAGCAGTTGGCATAGGTGCCACCAATA 77241 ||||||||| ||||| | || || || || |||||||||||||| || || | ||| | Sbjct 41853 AAGATTCATTATTTCCAAGTATCTGTGCTGTGGAAGCAGTTGGCATTGGAGCTAACAAAA 41912 Query 77242 AACTATTTCTGAGACCATGTGTTCTGATTTTATCTTTTAGATATTTCCAATCCCAAAGAT 77301 ||| | |||||||| || ||||| ||||||| |||||||||| |||| Sbjct 41913 GGGAATTACGAAGACCATGCTTTGCAATTTT-TCTTTTAAGGCAGTCCAATCCCACAGAT 41971 Query 77302 CTGAAGGTACAACATCCCAAAGATCGTATTGTAGAATTCCGTTACTAGCATATGATCCAT 77361 | | ||| ||||| | || ||||||| ||| || | ||| ||| ||||| Sbjct 41972 CAGTAGGAGTCTTGTCCCACATGTCATATTGTAAAATGCCTTGACTTGCAGGACTTCCAT 42031 Query 77362 TATATGTTTCATAAGGTCCTTCTGTTTCAGCTAGTTCACAACTCGCTTCCAATGCTCCGT 77421 ||| | ||| ||||| | || || | ||||||||| ||||| || ||||| | Sbjct 42032 CATAACTAGAGTAAACACCTTCCTTCTCTGCCAATTCACAACTAGCTTCTAAAGCTCCAT 42091 Query 77422 AATAAATTGTTTCGAAAATCTTCTTATTGAGATCTTGTGCTTCAATACTATCAAACGGAT 77481 | || || ||||| || || | | ||| || |||||| ||| ||| | ||| Sbjct 42092 AGTATATAGTTTCAAATATTTGTTGATTAAGTAAAATTGCTTCTTCACTCTCATAGGGA- 42150 Query 77482 AATGTAAAAGA-ATAAAGGCATCTGCTAATCCCTGAACTCCAATACCAATAGGTCTATGT 77540 ||| | | | | ||| |||||||||||||||||||| || || |||||||| |||||| Sbjct 42151 AATCTCATTAACACAAATGCATCTGCTAATCCCTGAACACCGATGCCAATAGGCCTATGT 42210 Query 77541 CTCTTATTGGAAATTTTAGCTTCTGGAATAGGATAATAATTAATGTCTATAATTTTATTG 77600 || |||| ||| | || |||||||| | ||||| | |||| || ||||| ||||| Sbjct 42211 TTCATATTCGAATTCTTTGCTTCTGGCACTGGATAGAAGTTAACATCAATAATCTTATTT 42270 Query 77601 AGATTTCTAACAACTACTTTAACCACGTCCTTTAGTTTAAGAAAATCAAATCTTCCATCT 77660 | |||| ||| |||| || | |||| ||| |||||| ||| || || | Sbjct 42271 AAATTTTGTGTAACAGTTTTAGTAACCTGTTTTAATTTTTGAAAATTAAAAGTTTTATTT 42330 Query 77661 ATAACAAACATGTTCAAAGCTATAGATGCTAGATTACAAACTGCTACCTCATTAGCGTTG 77720 ||||||||| || | |||||| || |||| ||| || ||||| || |||| || Sbjct 42331 TCAACAAACATATTAACAGCTATGGACGCTAAATTGCACACTGCCACTTCATCAGGTGAT 42390 Query 77721 GCATATTGTATTATCTCGGTACATAGATTACTACATTTGATAGTGCCCAGATTTTGTTGG 77780 | ||| | | || || || || || || || ||||| |||||||| ||||||| ||| Sbjct 42391 GTATACTCAACAATTTCTGTGCAAAGGTTGCTGCATTTTATAGTGCCAAGATTTTTTTGA 42450 Query 77781 TTGCTCTTTTTATTGCATGAGTCCTTATAAAGAATAAACGGAGTCCCGGTTTCAATCTGT 77840 || || ||| | ||||| || || ||||| | ||| | || || || ||||||| ||| Sbjct 42451 TTACTTTTTCTGTTGCAAGAATCTTTATACAACATATATGGTGTTCCTGTTTCAACTTGT 42510 Query 77841 GATTCGATAATAGATTTCCAGACGACTCTAGCTTTTATCATAGATTTGTATCGCCTCTCT 77900 | ||| || || | |||||| | || || | | | ||| || || | | | Sbjct 42511 GCTTCTATTATTGCTTTCCACAAAACCTGTGCACGAA--CTTGTTTTACATAGCGTTTTT 42568 Query 77901 CT--TTCATA--TTGAGTATATAGCCGTTCAAATTCATCTCCCCAAACATCATCCAATCC 77956 || |||||| || |||| ||| ||||||||| || |||||| |||| ||||||| Sbjct 42569 CTTGTTCATACTTTTCATATAAAGC--TTCAAATTCTTCACCCCAACAATCAGCCAATCC 42626 Query 77957 AGGGCATTCATTTGGGCACATCAATGACCAGTCACCATCTTCCTTAACTCGTTTCATAAA 78016 |||||| | | || ||||| | ||| | ||| || | || ||||||||||| Sbjct 42627 AGGGCAGTTGTGAGGACACATAAGACTCCAATTTTCATTTTTTTCTACCCGTTTCATAAA 42686 Query 78017 GAGATCAGGTATCCATAGAGCAATAAATAGATCTCGGGTTCTATGTTCTTCATTTCCTGT 78076 | ||| |||||||||| |||| |||| |||| | || |||||| || || || Sbjct 42687 CAAATCTGGTATCCATAAAGCATAGAATAATTCTCTTGCTCGTACTTCTTCTTTACCAGT 42746 Query 78077 ATTCTTTTTAAGATCGAGAAACTCCATAATATCAGAATGCCATGGTTCTAGATATATTGC 78136 ||||||||| | ||| | ||| || | | ||| | ||||| ||||| | ||| | ||| Sbjct 42747 ATTCTTTTTTAAATCTAAAAATTCAAAGACATCTGCGTGCCAAGGTTCCAAATACACTGC 42806 Query 78137 CATAACTCCAGGTCGTTTATTACCTCCCTGATCTATATATCTGGCGGTGTTATTATAAAC 78196 | ||||||| ||||| ||||| || ||||| | ||||||||| ||||||||||| || Sbjct 42807 AAATGCTCCAGGGCGTTTGTTACCCCCTTGATCCACATATCTGGCAGTGTTATTATAGAC 42866 Query 78197 TCTCAACATTGGAATAATACCGTTAGATGTTCCATTTGTTCCAGAAATATAACTTCCACT 78256 ||| ||||| |||| || ||| || || | |||||||| |||| ||||||| |||| | Sbjct 42867 TCTTAACATAGGAACAAGACCATTGGAAATCCCATTTGTACCAGCAATATAAGTTCCTTT 42926 Query 78257 TGCGCGAAT--ATTACTAATGGATATCCCTATTCCTCCTGCCATCTTAGATATTAGAGCG 78314 || | || | | | ||| | | || || ||||| || ||| || |||| || Sbjct 42927 AGCTCTTATGCAATGCACATGAACA--CCGATACCTCCAGCTGACTTGGAAATTAATGCA 42984 Query 78315 CAACGTTTCAATGTATCGTAGATACCCTCTATACTGTCATCCATCATGTTAAGAAGAAAA 78374 || |||| | |||||| || || || || ||||||||||| |||| | ||| ||| Sbjct 42985 CATTGTTTTAGTGTATCATATATTCCTTCGATACTGTCATCTTTCATAGCTACAAGGAAA 43044 Query 78375 CAGCTAGACATTTGATGATGAACAGTTCCTGCATTAAATAATGTCGGAGATGCATGCGTA 78434 || ||||| |||| | ||| | ||| ||| | ||| || |||||| ||| Sbjct 43045 CAAGAAGACAATTGAGGTCTTGGAGTCGCAGCAGAAAACATTGTTGGGCTTGCATGAGTA 43104 Query 78435 AACCATTTTTCAGAAAGTAGATTGTATGTTTCAATAGCTGATTCTATGTCCCATTGATGA 78494 || |||||||||| | | |||||| || | ||||||| ||||| || || Sbjct 43105 AAATATTTTTCAGATAACAAATTGTAAGTGTTTATAGCTGCATCTATATCTTCCCCGTGT 43164 Query 78495 ATTCCTACCGCTACACGCATCAACATATGCTGAGGTCTTTC 78535 || || || || |||||||||| ||||||||| |||| ||| Sbjct 43165 ATGCCAACAGCAACACGCATCAGCATATGCTGGGGTCGTTC 43205 Score = 89.7 bits (98), Expect = 7e-13 Identities = 93/122 (76%), Gaps = 0/122 (0%) Strand=Plus/Plus Query 78542 CTTATTATTTATTTTCAACAAGTATGATTTTTCCAAAGTTTTAAAACCAAAATAGTTGTA 78601 ||| || |||||||||||||| |||||| |||| | ||| || || |||||||| ||||| Sbjct 43749 CTTGTTGTTTATTTTCAACAAATATGATCTTTCTAGAGTCTTGAATCCAAAATAATTGTA 43808 Query 78602 TGAAAAGTCTCTCTCGTAAATAATAACAGAATTTAGTTTATCTTTGTATTTGGTAACAAT 78661 | ||| || | || |||| ||| |||| | ||| | ||||| | ||| ||||||| Sbjct 43809 TTTAAAATCACGATCATAAACAATCGCAGAGTCGAGTCTGTCTTTATGTTTCATAACAAT 43868 Query 78662 AT 78663 || Sbjct 43869 AT 43870 >seq1957 Length=467265 Score = 134 bits (148), Expect = 2e-26 Identities = 140/184 (76%), Gaps = 0/184 (0%) Strand=Plus/Minus Query 48410 GTAAGTATCTATTAAAAGACTATACATTTCGGAGTGAATATTTTCAATTGCCATCTGAAA 48469 ||||||||| ||||| | | ||||| || ||||| | |||||| || || |||||||| Sbjct 419070 GTAAGTATCAATTAACAAAGAGTACATCTCTGAGTGTACATTTTCCATAGCAATCTGAAA 419011 Query 48470 TCCGTAAAAACATCTCGCTTCTGTGATCTGTACCTCCGTACAAAATCGTTCAGCCAAATT 48529 || || ||||| || |||||||| | ||| || || |||| ||||| | | || Sbjct 419010 GCCATAGAAACACCTAGCTTCTGTCACCTGCACTTCTTGTGAAAAGCGTTCCACAAGGTT 418951 Query 48530 CTCATTTACTATTCCATCACTAGCAGCAAAAAATGCTAATACATGTTTAATAAAATATTT 48589 |||||| ||||| ||||| |||||||| || ||||||||||| ||||| |||| ||| Sbjct 418950 CTCATTGACTATGCCATCTGATGCAGCAAAGAACGCTAATACATGCTTAATGAAATGTTT 418891 Query 48590 TTCG 48593 |||| Sbjct 418890 TTCG 418887 Score = 104 bits (114), Expect = 3e-17 Identities = 80/95 (84%), Gaps = 0/95 (0%) Strand=Plus/Minus Query 48627 TTTGATATATCTACTTCTTCAGCTGTCCAAAATGATGCCTCTGCTTTTTTATACATATTC 48686 || |||| ||| ||||||||| | |||||||| || |||||||||||||| ||||| | | Sbjct 418459 TTAGATAGATCAACTTCTTCAACAGTCCAAAAGGAGGCCTCTGCTTTTTTGTACATTTGC 418400 Query 48687 CATATATCACTGTATTGGATTGGGAAAATAACAAA 48721 ||||||||| ||| ||||| ||||| |||||||| Sbjct 418399 CATATATCAGGGTACTGGATGGGGAATATAACAAA 418365 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 694597066763040