Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Melitaea_20cinxia_20[genbank_20GCA_5F000716385.1_202014-07-09] 8,261 sequences; 389,907,520 total letters Query= NC_031038.1 Length=222832 Score E Sequences producing significant alignments: (Bits) Value seq538 691 0.0 seq1957 113 6e-20 >seq538 Length=46986 Score = 691 bits (766), Expect = 0.0 Identities = 1239/1793 (69%), Gaps = 36/1793 (2%) Strand=Plus/Plus Query 75361 TTTATTCTTATCCAACGTGAACTGAATGGGAGAGGATGCTGGTTTTGTACGTAGATAGTA 75420 |||| ||||||| | || || ||||| | | | |||||||| ||||||| |||||| Sbjct 41434 TTTAGTCTTATCAACAGTAAATTGAATAGCATTAGCAGCTGGTTTAGTACGTAAATAGTA 41493 Query 75421 CATACCAGTTTTTAGACCCAGACTCCATCCGTAGAAATGCATGCTTGTTAGTTTGGAATA 75480 ||| |||||||| | |||| |||| | |||||||| || ||||| ||| ||| Sbjct 41494 CATTCCAGTTTTCAATCCCATCTTCCAAGCATAGAAATGTATAGATGTTAATTTTCCATA 41553 Query 75481 ACTCGGATCGGCTATATGAATATTCATCGACTGACTTTGATCGATGAAAGCTCCTCTATC 75540 | | || || |||| ||||||||| | |||||||| ||||| || || ||||||||||| Sbjct 41554 ATTTGGTTCAGCTACATGAATATTAAATGACTGACTCTGATCAATAAACGCTCCTCTATC 41613 Query 75541 AGCCGCCATTTTTATAATGGTCTTTTGAGGAATTTCCCAAATAGTTTTGAAAACTTGTTT 75600 || ||||||| |||| | || || | ||||||||||| || ||| | | | | Sbjct 41614 TGCAGCCATTTGTATAGTTGTTTTCACTGAAATTTCCCAAACTGTCTTGTATAAGTCCCT 41673 Query 75601 GATATCATCTGGAAGATTTG---TATTTTGAATGGATCCGCCATCAGATAT-AATTGT-- 75654 || | | ||||| ||| ||||||| || ||||| || | | | |||| | Sbjct 41674 TATTTTTTTTGGAATCTTTTCAATATTTTGTATAGATCC---ATT-GTTGTGAATTATCA 41729 Query 75655 -ATTCTTGATCTCATCATTCCACAATTTTCTCTCGGTTAAAACTCTAAGGAGATGAGGAT 75713 ||| || || || |||| ||| || | | ||||||| || | | ||||||| | | Sbjct 41730 AATTTTTCATATCTTCATCCCATAAGTCAGCTTGGGTTAAATCTGTTAAGAGATGATGGT 41789 Query 75714 TAACAATTTGAAATTCTCCAGACAATACTCTTCGAGTGTAAATATTACTGGTATATGGTT 75773 |||||| |||||| || ||||| ||||| | || |||||| || ||| |||||| Sbjct 41790 TAACAACTTGAAACTCACCAGATAATACCCGGCGTTGGTAAATGTTTGAAGTAAATGGTT 41849 Query 75774 CCACAGATTCATTGTTTCCCAAAATTTGAGCAGTTGAAGCAGTCGGCATAGGTGCCACCA 75833 | | ||||||||| ||||| | || || || || |||||||| ||||| || || | || Sbjct 41850 CAAAAGATTCATTATTTCCAAGTATCTGTGCTGTGGAAGCAGTTGGCATTGGAGCTAACA 41909 Query 75834 ATAAACTATTTCTGAGACCATGTGTTCTGATTTTATCTTTTAGATATTTCCAATCCCAAA 75893 | | ||| | |||||||| || ||||| ||||||| |||||||||| | Sbjct 41910 AAAGGGAATTACGAAGACCATGCTTTGCAATTTT-TCTTTTAAGGCAGTCCAATCCCACA 41968 Query 75894 GATCTGATGGTACAACATCCCAGAGATCGTATTGTAGAATTCCGTTGCTAGCATATGATC 75953 |||| | || ||||| | || ||||||| ||| || | || ||| || Sbjct 41969 GATCAGTAGGAGTCTTGTCCCACATGTCATATTGTAAAATGCCTTGACTTGCAGGACTTC 42028 Query 75954 CATTATATGTTTCGTAAGTCCCGTCCTTTTCAGCTAGTTCGCAACTCGCCTCTAACGCAC 76013 ||| ||| | |||| || ||||| || || | ||| ||||| || ||||| || | Sbjct 42029 CATCATAACTAGAGTAAACACCTTCCTTCTCTGCCAATTCACAACTAGCTTCTAAAGCTC 42088 Query 76014 CGTAATAAATTGTTTCGAAAATCTTCTTATTAAG--ATCTTGCGCTTCAAGACTATCAAA 76071 | || || || ||||| || || | | |||||| | |||| ||| ||| ||| | Sbjct 42089 CATAGTATATAGTTTCAAATATTTGTTGATTAAGTAAAATTGC--TTCTTCACTCTCATA 42146 Query 76072 AGGATAATGTAAAAGA-ATAAATGCATCTGCTAGTCCCTGAACTCCAATACCAATAGGTC 76130 ||| ||| | | | | |||||||||||||| ||||||||| || || |||||||| | Sbjct 42147 GGGA-AATCTCATTAACACAAATGCATCTGCTAATCCCTGAACACCGATGCCAATAGGCC 42205 Query 76131 TATGTCTCTTATTGGAAATTTCAGCTTCTGGAATAGGGTAATAATTAATATCTATAATTT 76190 ||||| || |||| ||| | | |||||||| | || || | |||| ||| ||||| | Sbjct 42206 TATGTTTCATATTCGAATTCTTTGCTTCTGGCACTGGATAGAAGTTAACATCAATAATCT 42265 Query 76191 TATTGAGATTTCTGACAACTACTTTAACCACGTCCTTTAGTTTGAGAAAATCAAATTTTC 76250 |||| | |||| ||| |||| || | |||| ||| |||||| ||| || Sbjct 42266 TATTTAAATTTTGTGTAACAGTTTTAGTAACCTGTTTTAATTTTTGAAAATTAAAAGTTT 42325 Query 76251 CATCTATCACAAACATATTAAGAGCTATAGATGCTAGATTACAAACGGCTACCTCATTAG 76310 || | ||||||||||||| |||||| || |||| ||| || || || || |||| || Sbjct 42326 TATTTTCAACAAACATATTAACAGCTATGGACGCTAAATTGCACACTGCCACTTCATCAG 42385 Query 76311 CATTGGCATATTGTATTATCTCCGTGCATAGATTACTACACTTGATAGTTCCAAGATTTT 76370 | ||| | | || || ||||| || || || || || ||||| |||||||||| Sbjct 42386 GTGATGTATACTCAACAATTTCTGTGCAAAGGTTGCTGCATTTTATAGTGCCAAGATTTT 42445 Query 76371 GTTGGTTGCTCTTTTTGTTACATGAGTCCTTATAAAGAACAAACGGAGTTCCAGTTTCAA 76430 ||| || || ||| |||| || || || ||||| | | | | || ||||| ||||||| Sbjct 42446 TTTGATTACTTTTTCTGTTGCAAGAATCTTTATACAACATATATGGTGTTCCTGTTTCAA 42505 Query 76431 TCTGTGATTCGATAATAGATTTCCAGACGA------CTCTAGCTTTTATTATAGATTTGT 76484 |||| ||| || || | |||||| | | | | | ||| | ||| | | Sbjct 42506 CTTGTGCTTCTATTATTGCTTTCCACAAAACCTGTGCACGAACTTGTTTTACA------T 42559 Query 76485 ATCGCTTCTCTCTTTCATATTGTGTATATAACCGTTCAAATTCATCTCCCCAAACATCAT 76544 | || || ||| |||||| | | |||||| ||||||||| || |||||| |||| Sbjct 42560 AGCGTTTTTCTTGTTCATACTTTTCATATAAAGCTTCAAATTCTTCACCCCAACAATCAG 42619 Query 76545 CCAAACCAGGACATTCATTCGGACACATCAATGACCACTCACCATCTTCCTTAACCCGTT 76604 |||| ||||| || | | |||||||| | ||| | ||| || | ||||||| Sbjct 42620 CCAATCCAGGGCAGTTGTGAGGACACATAAGACTCCAATTTTCATTTTTTTCTACCCGTT 42679 Query 76605 TCATAAAGAGATCAGGTATCCATAGAGCAATAAATAGATCTCGGGTTC-TACGTTCTTCA 76663 ||||||| | ||| |||||||||| |||| |||| |||| | || ||| |||||| Sbjct 42680 TCATAAACAAATCTGGTATCCATAAAGCATAGAATAATTCTCTTGCTCGTAC-TTCTTCT 42738 Query 76664 TTTCCTGTATTCTTTTTAAGATCTAGGAACTCCATAATATCAGAATGCCATGGTTCTAGA 76723 || || ||||||||||| | ||||| || || | | ||| | ||||| ||||| | | Sbjct 42739 TTACCAGTATTCTTTTTTAAATCTAAAAATTCAAAGACATCTGCGTGCCAAGGTTCCAAA 42798 Query 76724 TATATCGCCATAACACCCGGTCGTTTATTACCTCCCTGATCTATATATCTGGCAGTGTTA 76783 || | || | | || || ||||| ||||| || ||||| | |||||||||||||||| Sbjct 42799 TACACTGCAAATGCTCCAGGGCGTTTGTTACCCCCTTGATCCACATATCTGGCAGTGTTA 42858 Query 76784 TTATAAACTCTCAACATTGGAATAATGCCGTTAGATGTACCATTTGTTCCAGAAATATAA 76843 ||||| ||||| ||||| |||| || || || || | |||||||| |||| ||||||| Sbjct 42859 TTATAGACTCTTAACATAGGAACAAGACCATTGGAAATCCCATTTGTACCAGCAATATAA 42918 Query 76844 CTTCCACATGCACGAAT--ATTACTAATAGATAGGCCTATTCCTCCTGCCATTTTAGAGA 76901 |||| || | || | | | || || | || || ||||| || || || | Sbjct 42919 GTTCCTTTAGCTCTTATGCAATGCACAT-GA-ACACCGATACCTCCAGCTGACTTGGAAA 42976 Query 76902 TTAGAGCACAGCGTTTCAATGTGTCATAGATGCCCTCTATACTATCATCCATCATGTTAA 76961 ||| ||||| |||| | ||| ||||| || || || ||||| ||||| |||| | Sbjct 42977 TTAATGCACATTGTTTTAGTGTATCATATATTCCTTCGATACTGTCATCTTTCATAGCTA 43036 Query 76962 GAAGAAAACAGCTAGACATTTGATGATGAACAGTTCCTGCATTAAACAATGTAGGAGATG 77021 ||| ||||| ||||| |||| | ||| | ||| ||||| ||| || || Sbjct 43037 CAAGGAAACAAGAAGACAATTGAGGTCTTGGAGTCGCAGCAGAAAACATTGTTGGGCTTG 43096 Query 77022 CATGAGTGAACCATTTTTCAGAAAGTAGATTGTATGTTTCAATAACTGCTTCTATATCCC 77081 ||||||| || |||||||||| | | |||||| || | ||| |||| |||||||| Sbjct 43097 CATGAGTAAAATATTTTTCAGATAACAAATTGTAAGTGTTTATAGCTGCATCTATATCTT 43156 Query 77082 ATTGATGAATTCCTACAGCGACACGCATCAACATATGCTGAGGTCGTTCTACA 77134 || || || ||||| |||||||||| ||||||||| ||||||||| || Sbjct 43157 CCCCGTGTATGCCAACAGCAACACGCATCAGCATATGCTGGGGTCGTTCTGCA 43209 Score = 89.7 bits (98), Expect = 7e-13 Identities = 93/122 (76%), Gaps = 0/122 (0%) Strand=Plus/Plus Query 77137 CTTATTATTTATTTTCAACAAGTATGATTTTTCCAAAGTTTTAAAACCAAAATAGTTGTA 77196 ||| || |||||||||||||| |||||| |||| | ||| || || |||||||| ||||| Sbjct 43749 CTTGTTGTTTATTTTCAACAAATATGATCTTTCTAGAGTCTTGAATCCAAAATAATTGTA 43808 Query 77197 TGAAAAGTCTCTTTCGTAAATAATAACCGAATTTAGTTTGTCCTTATATTTGGTAACAAT 77256 | ||| || | || |||| ||| | || | ||| |||| |||| ||| ||||||| Sbjct 43809 TTTAAAATCACGATCATAAACAATCGCAGAGTCGAGTCTGTCTTTATGTTTCATAACAAT 43868 Query 77257 AT 77258 || Sbjct 43869 AT 43870 >seq1957 Length=467265 Score = 113 bits (124), Expect = 6e-20 Identities = 143/193 (74%), Gaps = 9/193 (5%) Strand=Plus/Minus Query 46690 CCAGGCATTAGTCCACGCTTTTTGAGCCAAAATATAGCCGCGAAAGATCCAGAAAAGAAT 46749 || ||||| ||||| | ||| |||||||| ||||| | || || |||||| |||||| Sbjct 419595 CCTGGCATAAGTCCCCTCTTCTTGAGCCAGAATATTGATGCAAAGCTTCCAGAGAAGAAT 419536 Query 46750 ATGCCTTCTACAGCCGCGAATGCGACAAGTCTCTCTCCGTAACTGGCA-TCAT--TATGA 46806 |||||||| || || || || || |||| | || ||| || | ||| || | | | Sbjct 419535 ATGCCTTCAACTGCAGCAAAAGCTACAATACGTTCACCGAAAGTTGCAGTCTTGCTTGCA 419476 Query 46807 ATCCACCTTTG---AGCCCAATCAGCCTTTTTCTTTACACAAGGCATTGTTTCTATAGCA 46863 ||||| ||| |||||| |||||||| ||||||||||| || | ||| || |||||| Sbjct 419475 ATCCA---TTGCATAGCCCAGTCAGCCTTCTTCTTTACACAGGGTAATGTCTCAATAGCA 419419 Query 46864 TTAAAGAGAAAGT 46876 ||||| | ||||| Sbjct 419418 TTAAACAAAAAGT 419406 Score = 95.1 bits (104), Expect = 2e-14 Identities = 78/95 (82%), Gaps = 0/95 (0%) Strand=Plus/Minus Query 47116 TTTGATATATCTACTTCTTCAGCTGTCCAGAATGACGCCTCTGCTTTTTTATACATATTC 47175 || |||| ||| ||||||||| | ||||| || || |||||||||||||| ||||| | | Sbjct 418459 TTAGATAGATCAACTTCTTCAACAGTCCAAAAGGAGGCCTCTGCTTTTTTGTACATTTGC 418400 Query 47176 CATATATCACGATATTGGATCGGAAAAATAACAAA 47210 ||||||||| | || ||||| || || |||||||| Sbjct 418399 CATATATCAGGGTACTGGATGGGGAATATAACAAA 418365 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 712860780611520