Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Melitaea_20cinxia_20[genbank_20GCA_5F000716385.1_202014-07-09] 8,261 sequences; 389,907,520 total letters Query= NC_031465.1 Length=360610 Score E Sequences producing significant alignments: (Bits) Value seq5066 122 2e-22 seq1291 89.7 1e-12 >seq5066 Length=19128 Score = 122 bits (134), Expect = 2e-22 Identities = 159/218 (73%), Gaps = 4/218 (2%) Strand=Plus/Minus Query 151892 GAGGACAAGATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTTCTCCCATC 151951 ||| || ||||| | ||||| |||||||| ||||| ||||||| ||| |||| ||||| Sbjct 18835 GAGAACCAGATGTAAGGTAGATTCTTTTTGAATGTTATAATCGGATAAGGTTCGACCATC 18776 Query 151952 TTCTAG--GCTTTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCTTCCTTT 152009 ||| || ||||| || || || || | | ||||| || | | || ||||| || Sbjct 18775 TTCAAGCTGCTTT--CCAGCAAAAATCAAACGTTGCTGATCTGGGGGAATGCCTTCTTTG 18718 Query 152010 TCTTGAATTTTTTGTTTGACAGTCTCTACGCTGTCTGAACTCTCTACTTCAAGAGTAATA 152069 |||||||| || ||| || | || | | | || || || ||||| | ||||||| Sbjct 18717 TCTTGAATCTTCGCTTTAACGTTTTCGATGGTATCGGATGGTTCAACTTCTAAAGTAATA 18658 Query 152070 GTTTTGCCCGTGAGAGTCTTCACGAAGACCTGCATTTT 152107 || || |||||||||||||||||||| | |||||| || Sbjct 18657 GTCTTACCCGTGAGAGTCTTCACGAAAATCTGCATCTT 18620 >seq1291 Length=99781 Score = 89.7 bits (98), Expect = 1e-12 Identities = 97/129 (75%), Gaps = 0/129 (0%) Strand=Plus/Minus Query 151979 CCTCTGCTGGTCCGCCGAGATTCCTTCCTTTTCTTGAATTTTTTGTTTGACAGTCTCTAC 152038 |||||||||||| | | |||||| || || ||||||||||| || ||| | || | Sbjct 93341 CCTCTGCTGGTCGGGAGGGATTCCCTCTTTGTCTTGAATTTTAGCCTTCACATTTTCGAT 93282 Query 152039 GCTGTCTGAACTCTCTACTTCAAGAGTAATAGTTTTGCCCGTGAGAGTCTTCACGAAGAC 152098 | | || || ||| || |||||||| || || ||||||||||| ||||| ||||| | Sbjct 93281 GGTATCAGACGGCTCGACCTCAAGAGTGATGGTCTTGCCCGTGAGGGTCTTGACGAAAAT 93222 Query 152099 CTGCATTTT 152107 |||||| || Sbjct 93221 CTGCATCTT 93213 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1153698674919131