Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Melitaea_20cinxia_20[genbank_20GCA_5F000716385.1_202014-07-09] 8,261 sequences; 389,907,520 total letters Query= NC_031761.1 Length=131855 Score E Sequences producing significant alignments: (Bits) Value seq2668 172 5e-38 seq5066 95.1 1e-14 >seq2668 Length=134947 Score = 172 bits (190), Expect = 5e-38 Identities = 214/293 (73%), Gaps = 0/293 (0%) Strand=Plus/Minus Query 104975 ATGCCCGGCCCTATACACCCTAAATACGGCTCCGAGTCTGCACGTTTAAAAACTTTTGAG 105034 ||||||||||| |||||||| || | || ||| | || || ||| || ||| || Sbjct 31188 ATGCCCGGCCCAGTACACCCTCGGTATGCTTCAGAGGCCGCTCGATTACGCACCTTTAAG 31129 Query 105035 GATTGGCCACTTAGTTTAAAACAAAGGCCAGAGCAATTGGCCGAAGCCGGTTTTTACTAC 105094 |||||||| | ||| | ||||||| || ||| || | |||||||| || |||| ||| Sbjct 31128 GATTGGCCCCGCAGTATGAAACAAAAACCCGAGGAACTTGCCGAAGCTGGCTTTTTCTAT 31069 Query 105095 ACCGGCAAAGGTGATAAAGTCAAATGTTTTTATTGCGACGGCGGCCTTAAGGATTGGGCA 105154 ||||| || || ||||| || |||||||| ||||| || |||| |||||||| Sbjct 31068 ACCGGTAACGGAGATAAGACGTTGTGCTTTTATTGTGACGGGGGTCTTAGGGATTGGGAG 31009 Query 105155 AACGCCGACGAACCGTGGGAGGAACATGCACGTTGGTTTGATCGCTGTTCGTTCGTAAAA 105214 |||| ||| | |||||||||| ||||||| |||||||| |||||||| | | ||| || Sbjct 31008 AACGACGATGTACCGTGGGAGCAACATGCTCGTTGGTTCGATCGCTGCGCCTATGTACAA 30949 Query 105215 CTGGTCAAAGGACACGACTACGTGCAGCGGGTGATTAGCGAAGCATGCGTCAT 105267 || || ||||| | || ||||| || || ||| ||||| || ||||| Sbjct 30948 CTCGTAAAAGGGCGGGATTACGTACAAAAAGTTATTTCGGAAGCTTGTGTCAT 30896 Score = 87.8 bits (96), Expect = 2e-12 Identities = 96/128 (75%), Gaps = 0/128 (0%) Strand=Plus/Minus Query 104735 AACGGGTTCTACTATTTGGGGCGCGCGGACGAAGTGCGCTGCGCGTTCTGCAAAGTGGAA 104794 ||||| || || ||| | || || | ||||| ||| | ||||||||||| || |||||| Sbjct 31422 AACGGATTTTATTATCTCGGACGAGGAGACGAGGTGAGATGCGCGTTCTGTAAGGTGGAA 31363 Query 104795 ATAATGCGCTGGTTGGAGGGCGACGACCCGGCCGTAGATCATAAACGATGGGCGCCACAG 104854 || ||| ||| |||| || ||||| || || ||| ||| | ||||||||||| ||| Sbjct 31362 ATCATGAAGTGGGTGGAAGGTGACGATCCTGCGAAAGACCATCAGCGATGGGCGCCGCAG 31303 Query 104855 TGCCCGTT 104862 || || || Sbjct 31302 TGTCCTTT 31295 >seq5066 Length=19128 Score = 95.1 bits (104), Expect = 1e-14 Identities = 160/230 (70%), Gaps = 4/230 (2%) Strand=Plus/Plus Query 111099 AATGCAAATTTTTGTCAAAACGTTGACCGGCAAAACCATTACCGTGGAAACGGAACCCAG 111158 |||||| ||||| || ||||| | || || ||||| || || | ||| ||||| Sbjct 18850 AATGCAGATTTTCGTTAAAACTCTTACAGGTAAAACTATAACGCTCGAAGTTGAACCTTC 18909 Query 111159 CGATTCTGTTGGCCAGGTAAAACAAAAAATTGCCGACAAAGAAGGCGTTCCCGTCGATCA 111218 ||| || | | | || ||| ||| ||| |||||||||||| ||||| ||||| Sbjct 18910 GGATACTATCGAGAATGTCAAAGCAAAGATTCAAGACAAAGAAGGCATTCCCCCAGATCA 18969 Query 111219 ACAAAGGCTTATTTATGCGGGCAAACAATTGGAAGA--TTCTAAAACTATGGCCGATTAT 111276 ||| | | || | ||| ||||| ||| | ||||| || | ||||| | || ||| Sbjct 18970 ACAGCGTTTGATCTTTGCTGGCAAGCAACTTGAAGACGGTCGTACACTAT--CAGACTAT 19027 Query 111277 AATATACAAAAAGAATCTACACTACATTTAGTGTTGCGTCTGCGCGGTGG 111326 ||||| ||||| || |||||||| || || || | ||||| || ||||| Sbjct 19028 AATATTCAAAAGGAGTCTACACTTCACTTGGTACTTCGTCTCCGTGGTGG 19077 Score = 91.5 bits (100), Expect = 1e-13 Identities = 168/245 (69%), Gaps = 1/245 (0%) Strand=Plus/Plus Query 111083 TTTATAAGAGTTTAAAA-ATGCAAATTTTTGTCAAAACGTTGACCGGCAAAACCATTACC 111141 ||||| | ||||| || ||||| ||||| || || || | || || || || ||||| Sbjct 18605 TTTATTACAGTTTTCAAGATGCAGATTTTCGTGAAGACTCTCACGGGTAAGACTATTACT 18664 Query 111142 GTGGAAACGGAACCCAGCGATTCTGTTGGCCAGGTAAAACAAAAAATTGCCGACAAAGAA 111201 | ||| ||||| |||| | | | | || ||| || ||| ||||||||| Sbjct 18665 TTAGAAGTTGAACCATCCGATACCATCGAAAACGTTAAAGCGAAGATTCAAGACAAAGAA 18724 Query 111202 GGCGTTCCCGTCGATCAACAAAGGCTTATTTATGCGGGCAAACAATTGGAAGATTCTAAA 111261 ||| ||||| ||||| ||| | | |||| ||| || || || | |||||| | | Sbjct 18725 GGCATTCCCCCAGATCAGCAACGTTTGATTTTTGCTGGAAAGCAGCTTGAAGATGGTCGA 18784 Query 111262 ACTATGGCCGATTATAATATACAAAAAGAATCTACACTACATTTAGTGTTGCGTCTGCGC 111321 || | |||||||||| || |||||||||||||| ||||| | || | || || || Sbjct 18785 ACCTTATCCGATTATAACATTCAAAAAGAATCTACCTTACATCTGGTTCTCCGGCTTCGT 18844 Query 111322 GGTGG 111326 ||||| Sbjct 18845 GGTGG 18849 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 421768731652936