Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Melitaea_20cinxia_20[genbank_20GCA_5F000716385.1_202014-07-09] 8,261 sequences; 389,907,520 total letters Query= NC_032111.1 Length=163005 Score E Sequences producing significant alignments: (Bits) Value seq1957 100 3e-16 >seq1957 Length=467265 Score = 100 bits (110), Expect = 3e-16 Identities = 133/185 (72%), Gaps = 0/185 (0%) Strand=Plus/Minus Query 23779 ATATATGTATCAATTAGTAAACTATACATTTCAGAATGAATATTTTCAATAGCAATCTGA 23838 || || |||||||||| ||| ||||| || || || | |||||| |||||||||||| Sbjct 419072 ATGTAAGTATCAATTAACAAAGAGTACATCTCTGAGTGTACATTTTCCATAGCAATCTGA 419013 Query 23839 AACCCATAAAAACATCTAGCTTCAGACAATTGAACATCATTAAAAAATCTTTTAGCTAAA 23898 || ||||| ||||| |||||||| | || || || || | |||| | || | | Sbjct 419012 AAGCCATAGAAACACCTAGCTTCTGTCACCTGCACTTCTTGTGAAAAGCGTTCCACAAGG 418953 Query 23899 TTTTCGTTAACAATACCATCACTAGCAGCAAAGAAAGCAAGAACATATTTTATAAAATGT 23958 || || || || || ||||| ||||||||||| || | |||| || || |||||| Sbjct 418952 TTCTCATTGACTATGCCATCTGATGCAGCAAAGAACGCTAATACATGCTTAATGAAATGT 418893 Query 23959 CTTTC 23963 |||| Sbjct 418892 TTTTC 418888 Score = 100 bits (110), Expect = 3e-16 Identities = 159/227 (70%), Gaps = 1/227 (0%) Strand=Plus/Minus Query 23533 TCATCCCTACTAATCAATTCATTAGAAAATGTTAATCCTGGCATTAATCCTCGTTTTTTA 23592 |||||||| ||||| ||||| || || ||||||||||| | ||| | || || Sbjct 419631 TCATCCCTTGAAATCAGCTCATTGCTGAAAGTCAATCCTGGCATAAGTCCCCTCTTCTTG 419572 Query 23593 ATCCAAAATATTGCAGCAAATGATCCGGAAAAGAAAATACCCTCAACAGCCGCAAAGGCC 23652 | ||| ||||||| ||||| ||| || ||||| || || ||||| || ||||| || Sbjct 419571 AGCCAGAATATTGATGCAAAGCTTCCAGAGAAGAATATGCCTTCAACTGCAGCAAAAGCT 419512 Query 23653 ACAAGACGTGTACCAAATGTTGCATTATAATCAGAAATCCAtttttttGTCCAATTAGCC 23712 |||| |||| ||| || |||||| | | | |||||||| | | ||| | |||| Sbjct 419511 ACAATACGTTCACCGAAAGTTGCAGTCTTGCTTGCAATCCATTGCATAGCCCAGTCAGCC 419452 Query 23713 TTCAATTTTACACACTCAATTGTTTCAATTGCTTTTAAGAGAAAAGT 23759 ||| |||||||| | ||| ||||| || || || | |||||| Sbjct 419451 TTCTTCTTTACACAGGGTAATGTCTCAATAGCATTAAACA-AAAAGT 419406 Score = 87.8 bits (96), Expect = 2e-12 Identities = 134/191 (70%), Gaps = 0/191 (0%) Strand=Plus/Plus Query 23533 TCATCCCTACTAATCAATTCATTAGAAAATGTTAATCCTGGCATTAATCCTCGTTTTTTA 23592 |||||||| ||||| ||||| || || ||||||||||| | ||| | || || Sbjct 418615 TCATCCCTTGAAATCAGCTCATTGCTGAAAGTCAATCCTGGCATAAGTCCCCTCTTCTTG 418674 Query 23593 ATCCAAAATATTGCAGCAAATGATCCGGAAAAGAAAATACCCTCAACAGCCGCAAAGGCC 23652 | ||| ||||||| ||||| ||| || ||||| || || ||||| || ||||| || Sbjct 418675 AGCCAGAATATTGATGCAAAGCTTCCAGAGAAGAATATGCCTTCAACTGCAGCAAAAGCT 418734 Query 23653 ACAAGACGTGTACCAAATGTTGCATTATAATCAGAAATCCAtttttttGTCCAATTAGCC 23712 |||| |||| ||| || |||||| | | | |||||||| | | ||| | |||| Sbjct 418735 ACAATACGTTCACCGAAAGTTGCAGTCTTGCTTGCAATCCATTGCATAGCCCAGTCAGCC 418794 Query 23713 TTCAATTTTAC 23723 ||| ||||| Sbjct 418795 TTCTTCTTTAC 418805 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 521434149845400