Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Melitaea_20cinxia_20[genbank_20GCA_5F000716385.1_202014-07-09] 8,261 sequences; 389,907,520 total letters Query= NC_032255.1 Length=112536 Score E Sequences producing significant alignments: (Bits) Value seq566 215 4e-51 seq5066 116 3e-21 >seq566 Length=99533 Score = 215 bits (238), Expect = 4e-51 Identities = 779/1207 (65%), Gaps = 39/1207 (3%) Strand=Plus/Minus Query 5735 TGTTACCTAACCCTTGATTCATGGAGTTTAACAAGTCGCCGTTGTCCGCGTCGATTTCCC 5794 |||| |||| ||| ||||| | ||| | | || ||||| || ||||| ||||||| Sbjct 71472 TGTTCCCTAGCCCCATGTTCATTGCGTTGAGTAGATCTCCGTTATCAGCGTCTATTTCCC 71413 Query 5795 ATCCAAATAGACCCCCCAGCCCCTTTTGGATGACATATTTTCCCTTGGCCGTCACGGACC 5854 | | |||||||| || || || | | || ||||| || || | | ||||| | Sbjct 71412 AGGCGAATAGACCGCCGAGTTTATTATTTCTCACGTATTTGCCTTTTTCGATGACGGATC 71353 Query 5855 TCTCGTCGTCGTAGGTGACGAGATCGTCGTTGT--GGT----ACACGTAGGGCGCTTGCG 5908 | ||| |||||| || || || || | || ||| ||||||| || ||||| | Sbjct 71352 TAGCGTTGTCGTAAGTTACAAGGTCCCCAGTGGACGGTCTGAACACGTATGGTGCTTGTG 71293 Query 5909 CCACTCCGTCGTAAT-----TCGGGTT------GGG--ATACCGGTTCGTGATGTCTTTG 5955 | || ||||||| || || ||| || || |||| || ||| || Sbjct 71292 CTACGTTATCGTAATGGAATTCCCATTTTCCCTGGGCAATTTCG-TTCGCTATTTCTCTG 71234 Query 5956 TAGTCCACGACACCGTTTTCCCAGGAACCCTTTACGGGACCCGTGGCAGTGCCTGTGAAG 6015 || || || ||||||| || ||||| ||||| || || || || || |||| |||||| Sbjct 71233 TAATCGACTACACCGTCTTGCCAGGTTCCCTTGACTGGTCCTGTTGCGTTGCCAGTGAAG 71174 Query 6016 GGATTGTTGTTGGTGATGTTGTGGATTCCACGCCATCCCCTGCCGTACATGGCCACGCCC 6075 |||||||||| | ||||| ||| ||| || | |||||||| ||||| || Sbjct 71173 GGATTGTTGTCCTCGTACCCGTGGACGCCAGTCCAGCCACGTCCGTACATTGCCACTCCG 71114 Query 6076 ACCACCAATTTGTTTGGGTTCACGCTCTGATTGAGCAGGCGTTGGACGGCGAACGCGGTG 6135 || | | || || |||||||| | ||| | || | || || | || |||| Sbjct 71113 ACGATGATCTTCTTCGGGTTCACACCTTGAGCTAACAAGTATTTTACACCAAAATCGGTA 71054 Query 6136 GTGTACTTTTCGGTGGGGTTCCATGTGGGCGCGTACAGGGGCGTCTGCAGTCCCAGATCG 6195 || || |||| | || |||||| || ||||| | || ||||| | |||||| | Sbjct 71053 GTATAAGTTTCTTTAGGATTCCATTCTGGAGCGTATAAAGGTGTCTGGTGCCCCAGAGTG 70994 Query 6196 GTGTTAGACCAGGCTCCCTTGAAATCGTACGTCATGACGAAAATATGATCCAGATACTCC 6255 ||||||||| ||||||||||| || || |||| | |||||| || |||| || | Sbjct 70993 TCGTTAGACCAAGCTCCCTTGAAGTCATAACTCATCAGGAAAATGTGGTCCATGTAGTTT 70934 Query 6256 TGCACCGCACCGTATTCTACAACGTTTATTTTGTCGTAGCCCCCGCTGATGGCGCTTGTG 6315 || | | ||| || || || | |||||||| | || ||||||| || ||| Sbjct 70933 TGGGCTTTGCTGTAGTCAACTACCTGGATTTTGTCCCAACCAGCGCTGATAGCTGATGTC 70874 Query 6316 AGCAGATACTTGCGACCCGTGCGAGT-CTCCAGACCGTCCAGCATGGACCTGAGGTCGCC 6374 | || || | ||| || |||| || |||| ||||| | ||| || Sbjct 70873 AATTCGTATTTCCTACCAGT-TGAGTGAGAAAGTTCGTCAAGCATTTCACGGAGTTCCTT 70815 Query 6375 CAAGAGCGCTTGA--TAGGTGACGCCGTCGACTGTGACGTTTCCTAAGGCAGGATTGGCT 6432 || || | |||| || | ||||| ||| | |||| |||| ||| || || Sbjct 70814 CATGA--GGTTGACGTAAACATCACCGTCTTCTG---GGCTTCCAAAGGTAGGGTTAGCG 70760 Query 6433 CCCTTGCCTCCGGGAAATTCCCAATCTATGTCCACGCCGTCGAAGAACTTCCAAGTTTCC 6492 || || || || || || |||||||| ||||| || || ||||| || ||||| |||| Sbjct 70759 CCTTTACCACCAGGGAACTCCCAATCAATGTCAACACCATCGAAAAATTTCCAGGTTTGA 70700 Query 6493 AGAAATTCTTCGACGCTCTCTACGAACACCTTTCTTTTAATCGTGTCGTTGAGCTGGTAA 6552 || || |||| ||| || ||||| |||| || || |||| | | | | Sbjct 70699 AGGAACTCTTTGACTGAGTCAACGAAGCGAGTTCTCTTGGTCTTGTCAGTAAAAAAGAAG 70640 Query 6553 AAGGGATCGCTCAGCGTCCACCCACCGATCGAGGGCAGGATGGTCAGATGCGGATTGTGT 6612 || ||||| || ||||| || || || || || || || |||| | || | | Sbjct 70639 AACGGATCAGCCAATGTCCATCCTCCAATAGAAGGAAGAATCTTCAGGTCAGGTCTCGCT 70580 Query 6613 TTTCGTATGGCCATAAGCTGACCGAAATTACCCTTGTA-----CATTTCCGAGTAGGCCT 6667 | | | | ||| || |||||||| || || ||||| || |||| || | | Sbjct 70579 TGTTTCAATGACATCAGTTGACCGAAGTTGCCTTTGTATGGTTCA-TTCCAAGATG--AT 70523 Query 6668 CGACGCCCTTCTGGGGTTTTTGTAGTGCGCCCCATATATCGTGTATGGACACCTTGAAGT 6727 || || ||||| ||||| |||| || |||| |||||| || || || || |||| Sbjct 70522 AGA--CCTTTCTGAGGTTTCTGTAAGGCTGCCCAGGGATCGTGAATAGATACTTTAAAGT 70465 Query 6728 CGTCTCGTCCCTCGCACGATCGCTGCAGAGCTTCGAACGAGCCCGGCACCTGTTTCAGAG 6787 | || || || ||| || || || || |||| ||| || | | || | | Sbjct 70464 CCTCGCGACCACTGCAAGAACGTTGAAGTGCTTGGAAACTTCCTTCGATTTCCTTTAAAC 70405 Query 6788 CGTCGTTGATACCATCCCCTCCGCACATGGGCACGAATCCGTACAGCAGATGTGTGAGAT 6847 |||||| || ||||| || || || || || | || || ||||| || || || |||| Sbjct 70404 TGTCGTTAATGCCATCTCCACCACAAATTGGAATAAAACCATACAGAAGGTGAGTTAGAT 70345 Query 6848 TGGGAATGGGGATTCTGTCGGCGGGAAACTGTCTGTCGTAAACACCCCACTCCACGAAGT 6907 ||||||| || | | ||| |||| |||| || |||||| ||||| ||||| || | Sbjct 70344 TGGGAATTGGTACGCGATCGACGGGGAACTTCCTCGGGTAAACGCCCCATTCCACAAAAT 70285 Query 6908 AAGCTCC 6914 |||| || Sbjct 70284 AAGCGCC 70278 >seq5066 Length=19128 Score = 116 bits (128), Expect = 3e-21 Identities = 145/194 (75%), Gaps = 6/194 (3%) Strand=Plus/Minus Query 44147 TCCTTTTGGATGTTGTAATCGGCGA--GTTGGCGCTCGTCGTCCAGCTGCTTCCCGGCAA 44204 || ||||| ||||| ||||||| | ||| || | || || |||||||| || |||| Sbjct 18813 TCTTTTTGAATGTTATAATCGGATAAGGTT--CGACCATCTTCAAGCTGCTTTCCAGCAA 18756 Query 44205 AGATCAAACGCTGCTGATCTGAAGGCACACCTTCCTTTTCCGTTATCTTCTGCTTCAATG 44264 | |||||||| |||||||||| || | ||||| || || |||||| |||| || | Sbjct 18755 AAATCAAACGTTGCTGATCTGGGGGAATGCCTTCTTTGTCTTGAATCTTC-GCTTTAACG 18697 Query 44265 TTC-CTATGGTGTCGGCGGATTCCACCTCCACCGTAATCGTCTTTCCCGTGAGGGTCTTC 44323 || | ||||| |||| | ||| || || | ||||| ||||| |||||||| |||||| Sbjct 18696 TTTTCGATGGTATCGGATGGTTCAACTTCTAAAGTAATAGTCTTACCCGTGAGAGTCTTC 18637 Query 44324 ACGAAGATTTGCAT 44337 ||||| || ||||| Sbjct 18636 ACGAAAATCTGCAT 18623 Score = 93.3 bits (102), Expect = 3e-14 Identities = 148/210 (70%), Gaps = 2/210 (1%) Strand=Plus/Minus Query 44129 ACCAGGTGAAGCGTGCTCTCCTTTTGGATGTTGTAATCGGCGAGTTGGCGCTCGTCGTCC 44188 |||| |||||| || ||||||||| || || || || | ||| || |||| || Sbjct 19059 ACCAAGTGAAGTGTAGACTCCTTTTGAATATTATAGTCTGATAGTGTACGACCGTCTTCA 19000 Query 44189 AGCTGCTTCCCGGCAAAGATCAAACGCTGCTGATCTGAAGGCACACCTTCCTTTTCCGTT 44248 || ||||| || ||||||||||||||||| ||||||| || | ||||| || || Sbjct 18999 AGTTGCTTGCCAGCAAAGATCAAACGCTGTTGATCTGGGGGAATGCCTTCTTTGTCTTGA 18940 Query 44249 ATCTTCTGCTTCAATGTTC-CTATGGTGTCGGCGGATTCCACCTCCACCGTAATCGTCTT 44307 ||||| ||||| | ||| | || || || | | ||| || || | ||| || || || Sbjct 18939 ATCTT-TGCTTTGACATTCTCGATAGTATCCGAAGGTTCAACTTCGAGCGTTATAGTTTT 18881 Query 44308 TCCCGTGAGGGTCTTCACGAAGATTTGCAT 44337 || || || || || ||||| || ||||| Sbjct 18880 ACCTGTAAGAGTTTTAACGAAAATCTGCAT 18851 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 359954155829037