Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Melitaea_20cinxia_20[genbank_20GCA_5F000716385.1_202014-07-09] 8,261 sequences; 389,907,520 total letters Query= NC_033780.1 Length=144510 Score E Sequences producing significant alignments: (Bits) Value seq5066 107 2e-18 >seq5066 Length=19128 Score = 107 bits (118), Expect = 2e-18 Identities = 162/228 (71%), Gaps = 2/228 (1%) Strand=Plus/Minus Query 41636 CCGCCGCGTAGACGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGAG 41695 || || || ||||| | |||| || || || |||||| ||||| |||||||| || Sbjct 19077 CCACCACGGAGACGAAGTACCAAGTGAAGTGTAGACTCCTTTTGAATATTATAGTCTGAT 19018 Query 41696 AGGGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGGA 41755 || || || |||| || || |||||||| || || |||| |||||||| || | |||| Sbjct 19017 AGTGTACGACCGTCTTCAAGTTGCTTGCCAGCAAAGATCAAACGCTGTTGATCTGGGGGA 18958 Query 41756 ACGCTCTCCTTGTCCATGATTTTTTGCTTCAACGACGAC-ACAGTGTCGCTCGACTCCAC 41814 | || || ||||| ||| | ||||||| || | | ||| || | || || Sbjct 18957 ATGCCTTCTTTGTCT-TGAATCTTTGCTTTGACATTCTCGATAGTATCCGAAGGTTCAAC 18899 Query 41815 CTCCACCGTTATCGTTTTACCCGTCAGCGTCTTTACGAAAATCTGCAT 41862 || | |||||| |||||||| || || || || |||||||||||||| Sbjct 18898 TTCGAGCGTTATAGTTTTACCTGTAAGAGTTTTAACGAAAATCTGCAT 18851 Score = 89.7 bits (98), Expect = 5e-13 Identities = 160/231 (69%), Gaps = 2/231 (1%) Strand=Plus/Minus Query 41636 CCGCCGCGTAGACGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGAG 41695 || || || || || | |||||||| | || || || ||||||||||| ||||| Sbjct 18849 CCACCACGAAGCCGGAGAACCAGATGTAAGGTAGATTCTTTTTGAATGTTATAATCGGAT 18790 Query 41696 AGGGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGGA 41755 | ||| || | || || |||||||| || || || |||| || || || || | |||| Sbjct 18789 AAGGTTCGACCATCTTCAAGCTGCTTTCCAGCAAAAATCAAACGTTGCTGATCTGGGGGA 18730 Query 41756 ACGCTCTCCTTGTCCATGATTTTTTGCTTCAACGACGAC-ACAGTGTCGCTCGACTCCAC 41814 | || || |||| | ||| | || |||| |||| | | || ||| | || || Sbjct 18729 ATGCCTTCTTTGT-CTTGAATCTTCGCTTTAACGTTTTCGATGGTATCGGATGGTTCAAC 18671 Query 41815 CTCCACCGTTATCGTTTTACCCGTCAGCGTCTTTACGAAAATCTGCATGTT 41865 || | || || || |||||||| || ||||| |||||||||||||| || Sbjct 18670 TTCTAAAGTAATAGTCTTACCCGTGAGAGTCTTCACGAAAATCTGCATCTT 18620 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 462256261333200