Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Mengenilla_20moldrzyki_20[genbank_20GCA_5F000281935.1_202012-07-27] 94,953 sequences; 155,727,465 total letters Query= NC_001993.1 Length=236120 Score E Sequences producing significant alignments: (Bits) Value seq64532 181 2e-40 seq18871 172 8e-38 seq47143 163 4e-35 seq87437 145 1e-29 seq73680 140 5e-28 >seq64532 Length=2006 Score = 181 bits (200), Expect = 2e-40 Identities = 252/347 (73%), Gaps = 7/347 (2%) Strand=Plus/Minus Query 205441 TTAGTTAAATGTGCAATCATATAAGTCAATAAACTATAACTAGCAACATTAAATGGTACA 205500 ||||||| ||| || | ||||||||| |||||| || || |||| ||| || || || Sbjct 1380 TTAGTTATATGAGCTACCATATAAGTTAATAAAGCGTAGCTTGCAATATTGAAAGGAACT 1321 Query 205501 CCTAAACCCATATCAGCTGATCTTTGATACATTTGACATGTAAGATATTTATTATTAATT 205560 ||||| ||||| ||||| || | |||||||| |||||| | | |||| |||| | Sbjct 1320 CCTAAGCCCATGTCAGCGGAACGTTGATACAATTGACACGATAAATATCCATTAGC---T 1264 Query 205561 ACATGAAATTGTACAAAACAATGACAAGGTGGTATAACCATATTTT-CAACATCTATAGG 205619 |||| ||| || || || ||||| || || || | |||| | | |||| | || || Sbjct 1263 ACATAAAACTGCACCAAGCAATGGCATGGAGGAAGCGCCATTTCTGGCAACTGC-ATCGG 1205 Query 205620 ATTCCAGGCTGTTAATATTATATTTCTAGATTCAGGtttattttttattttatttatAAT 205679 ||||||||||| | |||||| ||||| | || ||||| || || ||| |||| Sbjct 1204 ATTCCAGGCTGACATTATTATCCTTCTATCATTTGGATTATTCTTAATGGTATCAATAAC 1145 Query 205680 ATGTGTTAATTGATCAAATCCTTGATTTGTATAATTTGTATC-CATATCAATATATTTAG 205738 || | ||||||||||| ||||| ||| ||||||| | || ||| || ||| || | Sbjct 1144 ATTTTGTAATTGATCAATTCCTTTATTATCATAATTT-TCTCGCATTCCACAATACTTGG 1086 Query 205739 CACCAAAATGACGCCATTGAAAACCATAAACTGGACCTAAATCACCT 205785 | ||||| || | ||||||||| ||||||| || |||||||||||| Sbjct 1085 CGCCAAAGTGCCTCCATTGAAATCCATAAATAGGGCCTAAATCACCT 1039 >seq18871 Length=4271 Score = 172 bits (190), Expect = 8e-38 Identities = 180/235 (77%), Gaps = 1/235 (0%) Strand=Plus/Minus Query 124539 ATGCAAATATTTATAAAGACACTAACAGGCAAAACTATAACTATAGAGATTGAAGCAAAT 124598 |||||||| || | ||||| | || || ||||| ||||| | || | || || Sbjct 2252 ATGCAAATTTTCGTGAAGACGTTGACGGGAAAAACGATAACGTTGGAAGTCGAGGCCTCA 2193 Query 124599 GATACAATTTCTAATTTAAAACAGAAAATTCAAGATAAAGAAGGTATACCACCTGATCAA 124658 ||||||||| ||| | ||| |||||||||||| || |||||||| || || ||||| Sbjct 2192 GATACAATTGAAAATGTCAAAGCGAAAATTCAAGACAAGGAAGGTATTCCGCCAGATCAG 2133 Query 124659 CAAAGGCTTATTTTTGCAGGAAAACAATTAGAGGATAGTCGAACATTAGAAGATTATAAT 124718 || | | |||||||| ||||||||| | |||||| | ||||| ||| ||||||||| Sbjct 2132 CAGCGTTTAATTTTTGCTGGAAAACAACTTGAGGATGGCCGAACGTTATCTGATTATAAT 2073 Query 124719 ATTCAAAAAGAATCAACTTTGCATTTGGTTTTACGTTTACGAGGTGGTAT-TAAA 124772 |||||||||||||| |||||||| || |||||||| ||||| ||||| || |||| Sbjct 2072 ATTCAAAAAGAATCCACTTTGCACTTAGTTTTACGCTTACGCGGTGGAATCTAAA 2018 Score = 172 bits (190), Expect = 8e-38 Identities = 176/230 (77%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 124539 ATGCAAATATTTATAAAGACACTAACAGGCAAAACTATAACTATAGAGATTGAAGCAAAT 124598 |||||||| ||| |||| ||| |||| || ||||| ||||| |||| ||||| | Sbjct 2759 ATGCAAATTTTTGTAAAAACATTAACTGGAAAAACAATAACGTTAGAAGTTGAACAATCA 2700 Query 124599 GATACAATTTCTAATTTAAAACAGAAAATTCAAGATAAAGAAGGTATACCACCTGATCAA 124658 ||||| ||| || | ||| ||||||||| |||||||||||||| ||||| |||||| Sbjct 2699 GATACCATTGAAAACGTTAAAGCGAAAATTCAGGATAAAGAAGGTATTCCACCAGATCAA 2640 Query 124659 CAAAGGCTTATTTTTGCAGGAAAACAATTAGAGGATAGTCGAACATTAGAAGATTATAAT 124718 ||| || | ||||| || || ||||| || || ||| | ||||| ||| ||||||||| Sbjct 2639 CAACGGTTGATTTTCGCTGGTAAACAGTTGGAAGATGGCCGAACTTTATCTGATTATAAT 2580 Query 124719 ATTCAAAAAGAATCAACTTTGCATTTGGTTTTACGTTTACGAGGTGGTAT 124768 ||||| |||||||| || | ||| | ||| |||| |||||||||| || Sbjct 2579 ATTCAGAAAGAATCCACCCTCCATCTAGTTCTACGGCTACGAGGTGGAAT 2530 Score = 141 bits (156), Expect = 1e-28 Identities = 172/232 (74%), Gaps = 2/232 (1%) Strand=Plus/Minus Query 124538 AATGCAAATATTTATAAAGACACTAACAGGCAAAACTATAACTATAGAGATTGAAGCAAA 124597 ||||||||||||| | || || |||| || ||||| || ||| | || | || || Sbjct 3215 AATGCAAATATTTGTGAAAACTTTAACTGGTAAAACGATTACTTTGGAAGTCGAGTCATC 3156 Query 124598 TGATACAATTTCTAAT-TTAAAACAGAAAATTCAAGATAAAGAAGGTATACCACCTGATC 124656 ||| |||||| || |||| || ||||| || || |||||||| || || || |||| Sbjct 3155 TGACACAATTGAAAACGTTAAGGCA-AAAATCCAGGACAAAGAAGGAATTCCGCCAGATC 3097 Query 124657 AACAAAGGCTTATTTTTGCAGGAAAACAATTAGAGGATAGTCGAACATTAGAAGATTATA 124716 ||||| | | |||||||| || ||||||||||| || | || || ||| || || | Sbjct 3096 AACAACGATTAATTTTTGCTGGCAAACAATTAGAAGACGGCCGTACGTTATCCGACTACA 3037 Query 124717 ATATTCAAAAAGAATCAACTTTGCATTTGGTTTTACGTTTACGAGGTGGTAT 124768 | || ||||| ||||| ||| |||||||||| ||||||||||| || || || Sbjct 3036 ACATCCAAAAGGAATCTACTCTGCATTTGGTATTACGTTTACGTGGCGGGAT 2985 Score = 132 bits (146), Expect = 7e-26 Identities = 173/238 (73%), Gaps = 1/238 (0%) Strand=Plus/Minus Query 124539 ATGCAAATATTTATAAAGACACTAACAGGCAAAACTATAACTATAGAGATTGAAGCAAAT 124598 ||||| || ||| |||| || |||| || ||||||||||| | || | || | Sbjct 2986 ATGCAGATTTTTGTAAAAACGTTAACTGGAAAAACTATAACATTGGAAGTGGAGTCTTCA 2927 Query 124599 GATACAATTTCTAATTTAAAACAGAAAATTCAAGATAAAGAAGGTATACCACCTGATCAA 124658 || |||||| ||| | ||| || || || || ||||| ||||| ||||| ||||| Sbjct 2926 GACACAATTGAAAATGTTAAAGCCAAGATCCAGGACAAAGAGGGTATTCCACCAGATCAG 2867 Query 124659 CAAAGGCTTATTTTTGCAGGAAAACAATTAGAGGATAGTCGAACATTAGAAGATTATAAT 124718 || || | |||||||| || ||||| |||||||| |||| |||||| ||||| ||| Sbjct 2866 CAGCGGTTAATTTTTGCTGGCAAACAGTTAGAGGACGGTCGCACATTATCTGATTACAAT 2807 Query 124719 ATTCAAAAAGAATCAACTTTGCATTTGGTTTTACGTTTACGAGGTGGTATTAAAAATT 124776 |||| | ||| ||| || |||||||| || |||||||| || || || || ||| || Sbjct 2806 ATTC-AGAAGGATCGACCTTGCATTTAGTATTACGTTTGCGCGGCGGCATGCAAATTT 2750 >seq47143 Length=13737 Score = 163 bits (180), Expect = 4e-35 Identities = 173/228 (76%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 124538 AATGCAAATATTTATAAAGACACTAACAGGCAAAACTATAACTATAGAGATTGAAGCAAA 124597 ||||||||| ||| | || || |||| || ||||| || || | || | || || Sbjct 1041 AATGCAAATTTTTGTGAAAACTTTAACTGGTAAAACCATTACGCTTGAAGTCGAGCCATC 982 Query 124598 TGATACAATTTCTAATTTAAAACAGAAAATTCAAGATAAAGAAGGTATACCACCTGATCA 124657 ||||| ||| ||| | ||| ||||||||||||||| |||||||| || || ||||| Sbjct 981 CGATACGATTGAAAATGTTAAAGCGAAAATTCAAGATAAGGAAGGTATTCCTCCAGATCA 922 Query 124658 ACAAAGGCTTATTTTTGCAGGAAAACAATTAGAGGATAGTCGAACATTAGAAGATTATAA 124717 |||| || | || || || ||||||||| |||| ||| | |||| || | || ||||| Sbjct 921 ACAACGGTTAATATTCGCCGGAAAACAACTAGAAGATGGAAGAACGTTGAATGACTATAA 862 Query 124718 TATTCAAAAAGAATCAACTTTGCATTTGGTTTTACGTTTACGAGGTGG 124765 |||||| |||||||| || |||||||| || ||||||||||| ||||| Sbjct 861 TATTCAGAAAGAATCCACGTTGCATTTAGTCTTACGTTTACGCGGTGG 814 >seq87437 Length=6430 Score = 145 bits (160), Expect = 1e-29 Identities = 171/229 (75%), Gaps = 2/229 (1%) Strand=Plus/Plus Query 124538 AATGCAAATATTTATAAAGACACTAACAGGCAAAACTATAACTATAGAGATTGAAGCAAA 124597 |||||| || || | || || |||| || ||||| || || | ||| | || || Sbjct 298 AATGCAGATTTTCGTGAAAACGTTAACTGGTAAAACAATTACGCTTGAGGTCGAGTCATC 357 Query 124598 TGATACAATTTCTAAT-TTAAAACAGAAAATTCAAGATAAAGAAGGTATACCACCTGATC 124656 ||||||||| ||| |||| || || ||||||||||| ||||| || || || || | Sbjct 358 AGATACAATTGAAAATGTTAAGGCA-AAGATTCAAGATAAGGAAGGAATTCCTCCAGACC 416 Query 124657 AACAAAGGCTTATTTTTGCAGGAAAACAATTAGAGGATAGTCGAACATTAGAAGATTATA 124716 | || | | || ||||| ||||||||||||||||| ||||||| ||| ||||||| Sbjct 417 AGCAGCGCTTAATATTTGCTGGAAAACAATTAGAGGACGGTCGAACGTTAAGTGATTATA 476 Query 124717 ATATTCAAAAAGAATCAACTTTGCATTTGGTTTTACGTTTACGAGGTGG 124765 ||||||| || ||||| || |||||| | |||||||| ||||| ||||| Sbjct 477 ATATTCAGAAGGAATCGACATTGCATCTAGTTTTACGCTTACGCGGTGG 525 >seq73680 Length=8834 Score = 140 bits (154), Expect = 5e-28 Identities = 350/533 (66%), Gaps = 10/533 (2%) Strand=Plus/Minus Query 202862 ATACAT-CCAACATATCCATTTGGATCACGTCCATCTATAAAATATTTATCATTTAAATN 202920 |||||| |||||||| ||||| |||||| | ||||| | || | ||| |||||| Sbjct 7887 ATACATACCAACATAACCATTGGGATCATGGCCATCCAAGCTGTAATAATCGTTTAAAAA 7828 Query 202921 NNNNNNNNNNNNNAATGCTTCTTCTGGTGATTTTGTCCATTCTAATAtttttttAGCCCA 202980 | |||||||| || || | ||||||| || |||||||||||||| Sbjct 7827 AATTGCAATTTTAATAGCTTCTTCGGGCGAACTGCTCCATTCCAAAATTTTTTTAGCCCA 7768 Query 202981 ATACATTCTTAAATATCCATGCATTTTACCATAGATAATCATTTGTTTTTGTGATGCATT 203040 |||||||| | | ||||| ||||| || | | | || ||||| | |||| Sbjct 7767 ATACATTCGCATGAAACCATGTATTTTGCCCCGTTTTAGTAGTTCATTTTGCGCACCATT 7708 Query 203041 CCATAAATTGTCATGAGTTAATGCATTTTCAAGTTGATATAAACTATATATATGTTTTCT 203100 ||||||| || || ||| |||| |||||| ||| | | |||| | || | | Sbjct 7707 CCATAAAGGATCGTGCGTTTTTGCACTTTCAAATTGTTTAAGTGTATACAAATACTCGCG 7648 Query 203101 AGTATCATTTTTATGTTCATTTAGTGTTTTTATTGCCCAATTATTAGCACCATTTATATT 203160 |||| || ||| ||||| | ||| || ||||| | |||||||| ||| Sbjct 7647 TTTATCCTTCCGATGATCATTCAATGTCTTCTGAGCCCAGTCTGGAGCACCATCAATAGA 7588 Query 203161 ATCGTAATTTTCATTATAATAACAAAAATTATCACATAGTTCTTTACGAATAATAGCTTC 203220 |||||||| |||||| |||||||| ||||||| | ||||| || | ||| || Sbjct 7587 ATCGTAATGTTCATTGTAATAACAGTAATTATCGGACAGTTCACGTCGCACTATACACTC 7528 Query 203221 TTCACAAAAAACTTC-------TACCGATTTAGGATATAATTTTTTATATTTGTTAATTT 203273 ||| | ||| | | | || |||| | || | |||| || |||| || |||| Sbjct 7527 TTCCCGAAACGCCGCAGCACCTTTCCCATTTCGAATTTTATTTGGTA-ATTTATTTATTT 7469 Query 203274 CTAATATTATTCTTTGAGTTGAAATTTGACCAAAATGTATCCATGGTGATAAATTACTTA 203333 | || || |||||| |||| ||| || ||||| | ||| ||||| | ||| | Sbjct 7468 CCAAAATACATCTTTGCACAGAAACTTGGCCGAAATGGAGCCAAGGTGACAGATTTGACA 7409 Query 203334 TTGCATTAGCATTTGGATCATTTCtttttttAGCATAATCTTTTAATCTATTT 203386 ||||| ||| || |||||||||||| | |||||| ||| ||| | ||| Sbjct 7408 CCGCATTTGCACAAGGGTCATTTCTTTTTGTTGCATAA-GTTTCAATATTTTT 7357 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 754559339830400