Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Mengenilla_20moldrzyki_20[genbank_20GCA_5F000281935.1_202012-07-27] 94,953 sequences; 155,727,465 total letters Query= NC_002520.1 Length=232392 Score E Sequences producing significant alignments: (Bits) Value seq18871 122 1e-22 seq87437 98.7 1e-15 >seq18871 Length=4271 Score = 122 bits (134), Expect = 1e-22 Identities = 100/122 (82%), Gaps = 0/122 (0%) Strand=Plus/Plus Query 146066 AATACCAAATGTAAAGTAGATTCTTTAGATATATTATAATCTGAAAGAGTTCTGCTATCA 146125 || || ||||| || || |||||||| |||||| ||||| |||||||||| || ||| Sbjct 2269 AACACTAAATGCAACGTCGATTCTTTCTGTATATTGTAATCCGAAAGAGTTCGGCCATCT 2328 Query 146126 TCTAATTGTTTTCCAGCAAAAATCAATCTTTGCTGATCCGGAGGAATTCCTTCTTTATCT 146185 || |||||||| ||||||||||| |||| ||||||||| || ||||| ||||| ||||| Sbjct 2329 TCCAATTGTTTACCAGCAAAAATTAATCGTTGCTGATCAGGCGGAATACCTTCCTTATCC 2388 Query 146186 TG 146187 || Sbjct 2389 TG 2390 Score = 114 bits (126), Expect = 2e-20 Identities = 158/229 (69%), Gaps = 0/229 (0%) Strand=Plus/Plus Query 146049 TTCCACCTCTAAGTCTTAATACCAAATGTAAAGTAGATTCTTTAGATATATTATAATCTG 146108 ||||||||| || | || || | ||| | || |||||||| ||||||||||| | Sbjct 2531 TTCCACCTCGTAGCCGTAGAACTAGATGGAGGGTGGATTCTTTCTGAATATTATAATCAG 2590 Query 146109 AAAGAGTTCTGCTATCATCTAATTGTTTTCCAGCAAAAATCAATCTTTGCTGATCCGGAG 146168 | | ||||| || ||| || || ||||| ||||| |||||||| | ||| ||||| || | Sbjct 2591 ATAAAGTTCGGCCATCTTCCAACTGTTTACCAGCGAAAATCAACCGTTGTTGATCTGGTG 2650 Query 146169 GAATTCCTTCTTTATCTTGNNNNNNNNNNNNNNNNNNNNNNNNAGTATCTGAACTTTCTA 146228 |||| ||||||||||| || |||||||| ||| | Sbjct 2651 GAATACCTTCTTTATCCTGAATTTTCGCTTTAACGTTTTCAATGGTATCTGATTGTTCAA 2710 Query 146229 CTTCTAGTGTGATTGTTTTACCTGTTAATGTTTTAATGAATATTTGCAT 146277 |||||| || |||||||| || ||||||||||| | || |||||||| Sbjct 2711 CTTCTAACGTTATTGTTTTTCCAGTTAATGTTTTTACAAAAATTTGCAT 2759 Score = 105 bits (116), Expect = 1e-17 Identities = 109/140 (78%), Gaps = 2/140 (1%) Strand=Plus/Plus Query 146049 TTCCACCTC-TAAGTCTTAATACCAAATGTAAAGTAGATTCTTTAGATATATTATAATCT 146107 ||||||| | |||| | ||| || || || ||||| |||||||| ||||||||||| Sbjct 2024 TTCCACCGCGTAAG-CGTAAAACTAAGTGCAAAGTGGATTCTTTTTGAATATTATAATCA 2082 Query 146108 GAAAGAGTTCTGCTATCATCTAATTGTTTTCCAGCAAAAATCAATCTTTGCTGATCCGGA 146167 || | |||| || ||| || | |||||||||||||||||| || | |||||||| || Sbjct 2083 GATAACGTTCGGCCATCCTCAAGTTGTTTTCCAGCAAAAATTAAACGCTGCTGATCTGGC 2142 Query 146168 GGAATTCCTTCTTTATCTTG 146187 ||||| ||||| || ||||| Sbjct 2143 GGAATACCTTCCTTGTCTTG 2162 Score = 100 bits (110), Expect = 4e-16 Identities = 96/123 (78%), Gaps = 0/123 (0%) Strand=Plus/Plus Query 146065 TAATACCAAATGTAAAGTAGATTCTTTAGATATATTATAATCTGAAAGAGTTCTGCTATC 146124 |||||||||||| | ||||||||| || || || || || || | || | || || Sbjct 3002 TAATACCAAATGCAGAGTAGATTCCTTTTGGATGTTGTAGTCGGATAACGTACGGCCGTC 3061 Query 146125 ATCTAATTGTTTTCCAGCAAAAATCAATCTTTGCTGATCCGGAGGAATTCCTTCTTTATC 146184 ||||||||||| ||||||||||| |||| ||| ||||| || |||||||||||||| || Sbjct 3062 TTCTAATTGTTTGCCAGCAAAAATTAATCGTTGTTGATCTGGCGGAATTCCTTCTTTGTC 3121 Query 146185 TTG 146187 || Sbjct 3122 CTG 3124 >seq87437 Length=6430 Score = 98.7 bits (108), Expect = 1e-15 Identities = 157/231 (68%), Gaps = 2/231 (1%) Strand=Plus/Minus Query 146051 CCACCTC-TAAGTCTTAATACCAAATGTAAAGTAGATTCTTTAGATATATTATAATCTGA 146109 ||||| | |||| | ||| || | ||| || || ||||| || ||||||||||| Sbjct 525 CCACCGCGTAAG-CGTAAAACTAGATGCAATGTCGATTCCTTCTGAATATTATAATCACT 467 Query 146110 AAGAGTTCTGCTATCATCTAATTGTTTTCCAGCAAAAATCAATCTTTGCTGATCCGGAGG 146169 | |||| | || |||||||||||||||||||| || || | ||||| || ||||| Sbjct 466 TAACGTTCGACCGTCCTCTAATTGTTTTCCAGCAAATATTAAGCGCTGCTGGTCTGGAGG 407 Query 146170 AATTCCTTCTTTATCTTGNNNNNNNNNNNNNNNNNNNNNNNNAGTATCTGAACTTTCTAC 146229 ||||||||| |||||||| |||||||| || || Sbjct 406 AATTCCTTCCTTATCTTGAATCTTTGCCTTAACATTTTCAATTGTATCTGATGACTCGAC 347 Query 146230 TTCTAGTGTGATTGTTTTACCTGTTAATGTTTTAATGAATATTTGCATTTT 146280 || || || ||||||||||| ||||| ||||| | ||| || |||||||| Sbjct 346 CTCAAGCGTAATTGTTTTACCAGTTAACGTTTTCACGAAAATCTGCATTTT 296 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 742643899221760