Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Mengenilla_20moldrzyki_20[genbank_20GCA_5F000281935.1_202012-07-27] 94,953 sequences; 155,727,465 total letters Query= NC_004062.1 Length=119217 Score E Sequences producing significant alignments: (Bits) Value seq18871 136 3e-27 seq47143 95.1 9e-15 >seq18871 Length=4271 Score = 136 bits (150), Expect = 3e-27 Identities = 167/228 (73%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 42883 CCTCCACGCAGTCTTAACACCAAATGGATAGTGCTCTCCTTTTGCACATTGTAATCGGAC 42942 || ||||| | | ||| |||||||| | ||| |||||||| | ||||| ||||| Sbjct 2988 CCGCCACGTAAACGTAATACCAAATGCAGAGTAGATTCCTTTTGGATGTTGTAGTCGGAT 3047 Query 42943 AATGTACGTTCGTCGTCCAATTGTTTGCCGGCAAAAATCAATCGCTGTTGATCGGCCGGC 43002 || ||||| |||| || ||||||||||| |||||||| ||||| |||||||| | ||| Sbjct 3048 AACGTACGGCCGTCTTCTAATTGTTTGCCAGCAAAAATTAATCGTTGTTGATCTGGCGGA 3107 Query 43003 ACACCTTCTTTTTCGCTGATCAACTCTTTGACTCTGCCAACTGTGTCGCCAGCCTCGACG 43062 | |||||||| || ||| | || || | ||| |||||| | |||||| Sbjct 3108 ATTCCTTCTTTGTCCTGGATTTTTGCCTTAACGTTTTCAATTGTGTCAGATGACTCGACT 3167 Query 43063 TCTACCGTTATAGTTTTTCCGGTTAGAGTTTTCACAAAAATTTGCATT 43110 || | || || ||||| || |||| |||||||||||| ||||||||| Sbjct 3168 TCCAAAGTAATCGTTTTACCAGTTAAAGTTTTCACAAATATTTGCATT 3215 Score = 129 bits (142), Expect = 4e-25 Identities = 166/228 (73%), Gaps = 1/228 (0%) Strand=Plus/Plus Query 42882 GCCTCCACGCAGTCTTAACACCAAATGGATAGTGCTCTCCTTTTGCACATTGTAATCGGA 42941 ||| || |||| | ||| || ||||| | || | ||||| || | ||||||||| || Sbjct 2760 GCCGCCGCGCAAACGTAATACTAAATGCAAGGT-CGATCCTTCTGAATATTGTAATCAGA 2818 Query 42942 CAATGTACGTTCGTCGTCCAATTGTTTGCCGGCAAAAATCAATCGCTGTTGATCGGCCGG 43001 ||||| || |||| || || |||||||| |||||||| || ||||| ||||| | || Sbjct 2819 TAATGTGCGACCGTCCTCTAACTGTTTGCCAGCAAAAATTAACCGCTGCTGATCTGGTGG 2878 Query 43002 CACACCTTCTTTTTCGCTGATCAACTCTTTGACTCTGCCAACTGTGTCGCCAGCCTCGAC 43061 | ||| ||||| || |||| |||| || | ||| |||||| || ||| || Sbjct 2879 AATACCCTCTTTGTCCTGGATCTTGGCTTTAACATTTTCAATTGTGTCTGAAGACTCCAC 2938 Query 43062 GTCTACCGTTATAGTTTTTCCGGTTAGAGTTTTCACAAAAATTTGCAT 43109 || | |||||||||||||| |||| ||||| |||||||| ||||| Sbjct 2939 TTCCAATGTTATAGTTTTTCCAGTTAACGTTTTTACAAAAATCTGCAT 2986 Score = 109 bits (120), Expect = 4e-19 Identities = 152/213 (71%), Gaps = 0/213 (0%) Strand=Plus/Plus Query 42897 TAACACCAAATGGATAGTGCTCTCCTTTTGCACATTGTAATCGGACAATGTACGTTCGTC 42956 ||| || || || | |||| || ||||| | ||| ||||| || || || || | || Sbjct 2040 TAAAACTAAGTGCAAAGTGGATTCTTTTTGAATATTATAATCAGATAACGTTCGGCCATC 2099 Query 42957 GTCCAATTGTTTGCCGGCAAAAATCAATCGCTGTTGATCGGCCGGCACACCTTCTTTTTC 43016 || | |||||| || |||||||| || ||||| ||||| | ||| | |||||| || || Sbjct 2100 CTCAAGTTGTTTTCCAGCAAAAATTAAACGCTGCTGATCTGGCGGAATACCTTCCTTGTC 2159 Query 43017 GCTGATCAACTCTTTGACTCTGCCAACTGTGTCGCCAGCCTCGACGTCTACCGTTATAGT 43076 || | ||||||| | ||| ||| || |||||||| || | |||||| || Sbjct 2160 TTGAATTTTCGCTTTGACATTTTCAATTGTATCTGAGGCCTCGACTTCCAACGTTATCGT 2219 Query 43077 TTTTCCGGTTAGAGTTTTCACAAAAATTTGCAT 43109 |||||| || | || ||||| ||||||||||| Sbjct 2220 TTTTCCCGTCAACGTCTTCACGAAAATTTGCAT 2252 Score = 98.7 bits (108), Expect = 8e-16 Identities = 160/228 (70%), Gaps = 2/228 (1%) Strand=Plus/Plus Query 42883 CCTCCACGCAGTCTTAACACCAAATGGATAGTGCTCTCCTTTTGCACATTGTAATCGGAC 42942 || || || || | || || | ||||| ||| || || || | ||| ||||| || Sbjct 2533 CCACCTCGTAGCCGTAGAACTAGATGGAGGGTGGATTCTTTCTGAATATTATAATCAGAT 2592 Query 42943 AATGTACGTTCGTCGTCCAATTGTTTGCCGGCAAAAATCAATCGCTGTTGATCGGCCGGC 43002 || || || | || ||||| ||||| || || |||||||| || |||||||| | || Sbjct 2593 AAAGTTCGGCCATCTTCCAACTGTTTACCAGCGAAAATCAACCGTTGTTGATCTGGTGGA 2652 Query 43003 ACACCTTCTTTTTCGCTGA-TCAACTCTTTGACTCTGCCAACTGTGTCGCCAGCCTCGAC 43061 | ||||||||| || |||| | | |||| || | ||| || || || || Sbjct 2653 ATACCTTCTTTATC-CTGAATTTTCGCTTTAACGTTTTCAATGGTATCTGATTGTTCAAC 2711 Query 43062 GTCTACCGTTATAGTTTTTCCGGTTAGAGTTTTCACAAAAATTTGCAT 43109 |||| |||||| |||||||| |||| ||||| |||||||||||||| Sbjct 2712 TTCTAACGTTATTGTTTTTCCAGTTAATGTTTTTACAAAAATTTGCAT 2759 >seq47143 Length=13737 Score = 95.1 bits (104), Expect = 9e-15 Identities = 160/232 (69%), Gaps = 0/232 (0%) Strand=Plus/Plus Query 42881 CGCCTCCACGCAGTCTTAACACCAAATGGATAGTGCTCTCCTTTTGCACATTGTAATCGG 42940 |||| || || | | ||| || ||||| | ||| || || || | ||| || || Sbjct 812 CGCCACCGCGTAAACGTAAGACTAAATGCAACGTGGATTCTTTCTGAATATTATAGTCAT 871 Query 42941 ACAATGTACGTTCGTCGTCCAATTGTTTGCCGGCAAAAATCAATCGCTGTTGATCGGCCG 43000 ||| || | | | || || | |||||| ||||| || || || || |||||||| | | Sbjct 872 TCAACGTTCTTCCATCTTCTAGTTGTTTTCCGGCGAATATTAACCGTTGTTGATCTGGAG 931 Query 43001 GCACACCTTCTTTTTCGCTGATCAACTCTTTGACTCTGCCAACTGTGTCGCCAGCCTCGA 43060 | | |||||| || || || | |||| || | ||| || ||| | ||||| Sbjct 932 GAATACCTTCCTTATCTTGAATTTTCGCTTTAACATTTTCAATCGTATCGGATGGCTCGA 991 Query 43061 CGTCTACCGTTATAGTTTTTCCGGTTAGAGTTTTCACAAAAATTTGCATTTT 43112 | || | ||| || ||||| || |||| |||||||||||||||||||||||| Sbjct 992 CTTCAAGCGTAATGGTTTTACCAGTTAAAGTTTTCACAAAAATTTGCATTTT 1043 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 380928263963274