Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Mengenilla_20moldrzyki_20[genbank_20GCA_5F000281935.1_202012-07-27] 94,953 sequences; 155,727,465 total letters Query= NC_004690.1 Length=113220 Score E Sequences producing significant alignments: (Bits) Value seq18871 143 2e-29 seq47143 132 3e-26 seq87437 114 9e-21 >seq18871 Length=4271 Score = 143 bits (158), Expect = 2e-29 Identities = 170/228 (75%), Gaps = 2/228 (1%) Strand=Plus/Plus Query 15137 CCACCTCTCAATCTTAAAACTAAATGAAGGGTGGAATCTTTTTGTATGTTGTAATCGCTT 15196 ||||||| | | || ||||| ||| |||||||| ||||| || || || ||||| | Sbjct 2533 CCACCTCGTAGCCGTAGAACTAGATGGAGGGTGGATTCTTTCTGAATATTATAATCAGAT 2592 Query 15197 AGAATTCTCGCGTCTTCTAATTGTTTGCCAGCGTATATCAAACGTTGTTGGTCGTTTGGA 15256 | | ||| | ||||| || ||||| |||||| | ||||| |||||||| || |||| Sbjct 2593 AAAGTTCGGCCATCTTCCAACTGTTTACCAGCGAAAATCAACCGTTGTTGATCTGGTGGA 2652 Query 15257 ATTCCTTCTTTGTCACAAATTTTGCTCTTTA-CAATTTCTATGGTATCGCTATTTTCTAC 15315 || |||||||| || |||||| | ||||| | |||| |||||||| | ||| || Sbjct 2653 ATACCTTCTTTATCCTGAATTTT-CGCTTTAACGTTTTCAATGGTATCTGATTGTTCAAC 2711 Query 15316 ATCTAAGGTAATGGTTTTACCTGTCAGAGTTTTTACAAAAATTTGCAT 15363 ||||| || || ||||| || || | |||||||||||||||||||| Sbjct 2712 TTCTAACGTTATTGTTTTTCCAGTTAATGTTTTTACAAAAATTTGCAT 2759 Score = 131 bits (144), Expect = 1e-25 Identities = 164/224 (73%), Gaps = 1/224 (0%) Strand=Plus/Plus Query 15151 TAAAACTAAATGAAGGGTGGAATCTTTTTGTATGTTGTAATCGCTTAGAATTCTCGCGTC 15210 ||| || ||||| || || || || ||||| |||||||| ||| || | | |||| Sbjct 3002 TAATACCAAATGCAGAGTAGATTCCTTTTGGATGTTGTAGTCGGATAACGTACGGCCGTC 3061 Query 15211 TTCTAATTGTTTGCCAGCGTATATCAAACGTTGTTGGTCGTTTGGAATTCCTTCTTTGTC 15270 |||||||||||||||||| | || || |||||||| || ||||||||||||||||| Sbjct 3062 TTCTAATTGTTTGCCAGCAAAAATTAATCGTTGTTGATCTGGCGGAATTCCTTCTTTGTC 3121 Query 15271 ACAAATTTTGCTCTTTACAATTTCTATGGTATCGCTATTTTCTACATCTAAGGTAATGGT 15330 ||||| ||| || |||| || || || || || || || ||||| || Sbjct 3122 CTGGATTTTTGCCTTAACGTTTTCAATTGTGTCAGATGACTCGACTTCCAAAGTAATCGT 3181 Query 15331 TTTACCTGTCAGAGTTTTTACAAAAATTTGCA-TATTTGAAAAT 15373 |||||| || | |||||| ||||| ||||||| | ||||||||| Sbjct 3182 TTTACCAGTTAAAGTTTTCACAAATATTTGCATTCTTTGAAAAT 3225 Score = 95.1 bits (104), Expect = 9e-15 Identities = 160/229 (70%), Gaps = 2/229 (1%) Strand=Plus/Plus Query 15137 CCACCTCTCAATCTTAAAACTAAATGAAGGGTGGAATCTTTTTGTATGTTGTAATCGCTT 15196 ||||| | || | ||||||||| || | ||||| |||||||| || || ||||| | Sbjct 2026 CCACCGCGTAAGCGTAAAACTAAGTGCAAAGTGGATTCTTTTTGAATATTATAATCAGAT 2085 Query 15197 AGAATTCTCGCGTCTTCTAATTGTTTGCCAGCGTATATCAAACGTTGTTGGTCGTTTGGA 15256 | ||| | || || | |||||| ||||| | || ||||| || || || ||| Sbjct 2086 AACGTTCGGCCATCCTCAAGTTGTTTTCCAGCAAAAATTAAACGCTGCTGATCTGGCGGA 2145 Query 15257 ATTCCTTCTTTGTCACAAATTTTGCTCTTT-ACAATTTCTATGGTATCGCTATTTTCTAC 15315 || ||||| ||||| |||||| | |||| ||| |||| || ||||| || || Sbjct 2146 ATACCTTCCTTGTCTTGAATTTT-CGCTTTGACATTTTCAATTGTATCTGAGGCCTCGAC 2204 Query 15316 ATCTAAGGTAATGGTTTTACCTGTCAGAGTTTTTACAAAAATTTGCATA 15364 || || || || ||||| || |||| || || || |||||||||||| Sbjct 2205 TTCCAACGTTATCGTTTTTCCCGTCAACGTCTTCACGAAAATTTGCATA 2253 Score = 95.1 bits (104), Expect = 9e-15 Identities = 159/229 (69%), Gaps = 1/229 (0%) Strand=Plus/Plus Query 15135 TGCCACCTCTCAATCTTAAAACTAAATGAAGGGTGGAATCTTTTTGTATGTTGTAATCGC 15194 |||| || | ||| | ||| |||||||| | ||| || || || || || |||||||| Sbjct 2759 TGCCGCCGCGCAAACGTAATACTAAATGCAAGGTCGA-TCCTTCTGAATATTGTAATCAG 2817 Query 15195 TTAGAATTCTCGCGTCTTCTAATTGTTTGCCAGCGTATATCAAACGTTGTTGGTCGTTTG 15254 || | | |||| ||||| ||||||||||| | || || || || || || || Sbjct 2818 ATAATGTGCGACCGTCCTCTAACTGTTTGCCAGCAAAAATTAACCGCTGCTGATCTGGTG 2877 Query 15255 GAATTCCTTCTTTGTCACAAATTTTGCTCTTTACAATTTCTATGGTATCGCTATTTTCTA 15314 |||| || |||||||| || ||| || ||| |||| || || || | || | Sbjct 2878 GAATACCCTCTTTGTCCTGGATCTTGGCTTTAACATTTTCAATTGTGTCTGAAGACTCCA 2937 Query 15315 CATCTAAGGTAATGGTTTTACCTGTCAGAGTTTTTACAAAAATTTGCAT 15363 | || || || || ||||| || || | |||||||||||||| ||||| Sbjct 2938 CTTCCAATGTTATAGTTTTTCCAGTTAACGTTTTTACAAAAATCTGCAT 2986 >seq47143 Length=13737 Score = 132 bits (146), Expect = 3e-26 Identities = 174/237 (73%), Gaps = 3/237 (1%) Strand=Plus/Plus Query 15136 GCCACCTCTCAATCTTAAAACTAAATGAAGGGTGGAATCTTTTTGTATGTTGTAATCGCT 15195 |||||| | || | ||| |||||||| | ||||| ||||| || || || || || | Sbjct 813 GCCACCGCGTAAACGTAAGACTAAATGCAACGTGGATTCTTTCTGAATATTATAGTCATT 872 Query 15196 TAGAATTCTCGCGTCTTCTAATTGTTTGCCAGCGTATATCAAACGTTGTTGGTCGTTTGG 15255 | |||| | ||||||| |||||| || ||| |||| || |||||||| || || Sbjct 873 CAACGTTCTTCCATCTTCTAGTTGTTTTCCGGCGAATATTAACCGTTGTTGATCTGGAGG 932 Query 15256 AATTCCTTCTTTGTCACAAATTTTGCTCTTTA-CAATTTCTATGGTATCGCTATTTTCTA 15314 ||| ||||| || || |||||| | ||||| || |||| || |||||| || | Sbjct 933 AATACCTTCCTTATCTTGAATTTT-CGCTTTAACATTTTCAATCGTATCGGATGGCTCGA 991 Query 15315 CATCTAAGGTAATGGTTTTACCTGTCAGAGTTTTTACAAAAATTTGCATATTTGAAA 15371 | || | |||||||||||||| || | |||||| |||||||||||||| ||||||| Sbjct 992 CTTCAAGCGTAATGGTTTTACCAGTTAAAGTTTTCACAAAAATTTGCAT-TTTGAAA 1047 >seq87437 Length=6430 Score = 114 bits (126), Expect = 9e-21 Identities = 171/239 (72%), Gaps = 3/239 (1%) Strand=Plus/Minus Query 15136 GCCACCTCTCAATCTTAAAACTAAATGAAGGGTGGAATCTTTTTGTATGTTGTAATCGCT 15195 |||||| | || | |||||||| ||| | || || || || || || || ||||| || Sbjct 526 GCCACCGCGTAAGCGTAAAACTAGATGCAATGTCGATTCCTTCTGAATATTATAATCACT 467 Query 15196 TAGAATTCTCGCGTCTTCTAATTGTTTGCCAGCGTATATCAAACGTTGTTGGTCGTTTGG 15255 || ||| |||| ||||||||||| ||||| |||| || || || ||||| || Sbjct 466 TAACGTTCGACCGTCCTCTAATTGTTTTCCAGCAAATATTAAGCGCTGCTGGTCTGGAGG 407 Query 15256 AATTCCTTCTTTGTCACAAAT-TTTGCTCTTTACAATTTCTATGGTATCGCTATTTTCTA 15314 ||||||||| || || ||| ||||| ||| ||| |||| || ||||| || | Sbjct 406 AATTCCTTCCTTATCTTGAATCTTTGC-CTTAACATTTTCAATTGTATCTGATGACTCGA 348 Query 15315 CATCTAAGGTAATGGTTTTACCTGTCAGAGTTTTTACAAAAATTTGCATATTTGAAAAT 15373 | || | ||||| |||||||| || | ||||| || ||||| ||||| ||||| ||| Sbjct 347 CCTCAAGCGTAATTGTTTTACCAGTTAACGTTTTCACGAAAATCTGCAT-TTTGACAAT 290 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 361760071855773