Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Mengenilla_20moldrzyki_20[genbank_20GCA_5F000281935.1_202012-07-27] 94,953 sequences; 155,727,465 total letters Query= NC_005038.1 Length=99657 Score E Sequences producing significant alignments: (Bits) Value seq18871 109 3e-19 seq87437 91.5 9e-14 seq10102 89.7 3e-13 seq47143 86.0 4e-12 >seq18871 Length=4271 Score = 109 bits (120), Expect = 3e-19 Identities = 163/230 (71%), Gaps = 6/230 (3%) Strand=Plus/Plus Query 33143 CCGCCTCTTAACCGCAACACCAAATGCAATGTCGACTCTTTTTGTATATTGTAATCAGAC 33202 || || | ||| || || || || ||||| || || |||||||| ||||| |||||||| Sbjct 2026 CCACCGCGTAAGCGTAAAACTAAGTGCAAAGTGGATTCTTTTTGAATATTATAATCAGAT 2085 Query 33203 AAATTGAGTTGGTCATCC---AATTGCTTTCCACTAAATATTAAACGTTGCTGGTCCGTG 33259 || | | || ||||| | ||| |||||| ||| |||||||| ||||| || | Sbjct 2086 AACGT---TCGGCCATCCTCAAGTTGTTTTCCAGCAAAAATTAAACGCTGCTGATCTGGC 2142 Query 33260 GGTATGCCTTCTTTTTCGCTAATCGCCTGTTTTACTGTTTGAATCGTGTCGTTGGGTTGA 33319 || || ||||| || || ||| | ||| || ||| ||| || || || | Sbjct 2143 GGAATACCTTCCTTGTCTTGAATTTTCGCTTTGACATTTTCAATTGTATCTGAGGCCTCG 2202 Query 33320 ACGTCCAGAGTTATCGTTTTTCCCGTAAGAGTTTTTACGAAAATTTGCAT 33369 || |||| ||||||||||||||||| | || || |||||||||||||| Sbjct 2203 ACTTCCAACGTTATCGTTTTTCCCGTCAACGTCTTCACGAAAATTTGCAT 2252 Score = 95.1 bits (104), Expect = 8e-15 Identities = 158/227 (70%), Gaps = 1/227 (0%) Strand=Plus/Plus Query 33143 CCGCCTCTTAACCGCAACACCAAATGCAATGTCGACTCTTTTTGTATATTGTAATCAGAC 33202 ||||| | || || || || |||||||| ||||| || || || |||||||||||||| Sbjct 2761 CCGCCGCGCAAACGTAATACTAAATGCAAGGTCGA-TCCTTCTGAATATTGTAATCAGAT 2819 Query 33203 AAATTGAGTTGGTCATCCAATTGCTTTCCACTAAATATTAAACGTTGCTGGTCCGTGGGT 33262 || || | ||| || || || || ||| ||| ||||| || ||||| || | || Sbjct 2820 AATGTGCGACCGTCCTCTAACTGTTTGCCAGCAAAAATTAACCGCTGCTGATCTGGTGGA 2879 Query 33263 ATGCCTTCTTTTTCGCTAATCGCCTGTTTTACTGTTTGAATCGTGTCGTTGGGTTGAACG 33322 || || ||||| || ||| ||| || ||| ||| ||||| | | || Sbjct 2880 ATACCCTCTTTGTCCTGGATCTTGGCTTTAACATTTTCAATTGTGTCTGAAGACTCCACT 2939 Query 33323 TCCAGAGTTATCGTTTTTCCCGTAAGAGTTTTTACGAAAATTTGCAT 33369 |||| ||||| |||||||| || | |||||||| ||||| ||||| Sbjct 2940 TCCAATGTTATAGTTTTTCCAGTTAACGTTTTTACAAAAATCTGCAT 2986 Score = 91.5 bits (100), Expect = 9e-14 Identities = 98/129 (76%), Gaps = 8/129 (6%) Strand=Plus/Plus Query 33152 AACCGCAACACCAAATGCAATGTCGACTCTTTTTGTATATTGTAATCAGACAAATTGAGT 33211 || |||||||| |||||||| ||||| ||||| |||||||||||||| || | |||| Sbjct 2263 AAACGCAACACTAAATGCAACGTCGATTCTTTCTGTATATTGTAATCCGAAA----GAGT 2318 Query 33212 TGG----TCATCCAATTGCTTTCCACTAAATATTAAACGTTGCTGGTCCGTGGGTATGCC 33267 | | || |||||||| || ||| ||| ||||| |||||||| || | || || || Sbjct 2319 TCGGCCATCTTCCAATTGTTTACCAGCAAAAATTAATCGTTGCTGATCAGGCGGAATACC 2378 Query 33268 TTCTTTTTC 33276 ||| || || Sbjct 2379 TTCCTTATC 2387 Score = 89.7 bits (98), Expect = 3e-13 Identities = 163/238 (68%), Gaps = 2/238 (1%) Strand=Plus/Plus Query 33135 AATCTTCA--CCGCCTCTTAACCGCAACACCAAATGCAATGTCGACTCTTTTTGTATATT 33192 ||||| || || |||| || ||| | || | ||| | || || ||||| || ||||| Sbjct 2523 AATCTGCATTCCACCTCGTAGCCGTAGAACTAGATGGAGGGTGGATTCTTTCTGAATATT 2582 Query 33193 GTAATCAGACAAATTGAGTTGGTCATCCAATTGCTTTCCACTAAATATTAAACGTTGCTG 33252 |||||||| ||| | | || ||||| || || ||| || || || ||||| || Sbjct 2583 ATAATCAGATAAAGTTCGGCCATCTTCCAACTGTTTACCAGCGAAAATCAACCGTTGTTG 2642 Query 33253 GTCCGTGGGTATGCCTTCTTTTTCGCTAATCGCCTGTTTTACTGTTTGAATCGTGTCGTT 33312 || | || || |||||||| || ||| | ||| || ||| ||| || || Sbjct 2643 ATCTGGTGGAATACCTTCTTTATCCTGAATTTTCGCTTTAACGTTTTCAATGGTATCTGA 2702 Query 33313 GGGTTGAACGTCCAGAGTTATCGTTTTTCCCGTAAGAGTTTTTACGAAAATTTGCATG 33370 ||| ||| || | ||||| |||||||| || | |||||||| |||||||||||| Sbjct 2703 TTGTTCAACTTCTAACGTTATTGTTTTTCCAGTTAATGTTTTTACAAAAATTTGCATG 2760 >seq87437 Length=6430 Score = 91.5 bits (100), Expect = 9e-14 Identities = 163/234 (70%), Gaps = 8/234 (3%) Strand=Plus/Minus Query 33143 CCGCCTCTTAACCGCAACACCAAATGCAATGTCGACTCTTTTTGTATATTGTAATCAGAC 33202 || || | ||| || || || | |||||||||||| || || || ||||| |||||| Sbjct 525 CCACCGCGTAAGCGTAAAACTAGATGCAATGTCGATTCCTTCTGAATATTATAATCACTT 466 Query 33203 AAATTGAGTTGGTCATCCAATTGCTTTCCACTAAATATTAAACGTTGCTGGTCCGTGGGT 33262 || | | ||| || ||||| |||||| ||||||||| || |||||||| | || Sbjct 465 AACGTTCGACCGTCCTCTAATTGTTTTCCAGCAAATATTAAGCGCTGCTGGTCTGGAGGA 406 Query 33263 ATGCCTTCTTTTTCGCTAATC---GCCTGTTTTACTGTTTGAATCGTGTC-GTTGGGTTG 33318 || ||||| || || |||| ||| || || ||| ||| || || | || | | Sbjct 405 ATTCCTTCCTTATCTTGAATCTTTGCC---TTAACATTTTCAATTGTATCTGATGACTCG 349 Query 33319 AACGTCCAGAGTTATCGTTTTTCCCGTAAGAGTTTTTACGAAAATTTGCATGTT 33372 || || || || || ||||| || || | ||||| |||||||| ||||| || Sbjct 348 -ACCTCAAGCGTAATTGTTTTACCAGTTAACGTTTTCACGAAAATCTGCATTTT 296 >seq10102 Length=15563 Score = 89.7 bits (98), Expect = 3e-13 Identities = 100/134 (75%), Gaps = 0/134 (0%) Strand=Plus/Plus Query 36423 ACATTGCCCAAATCTCCAGCGTGTCGTATGTTATCAGTTGGACCGCCGTGCACCATTTTA 36482 ||||||||||| || || | || || |||||||| |||||||||||| ||| || Sbjct 14355 ACATTGCCCAAGTCGCCGACATGACGAATGTTATCTTCTGGACCGCCGTGGTCCACATTT 14414 Query 36483 TCGGGATTAAAATGACCTCCCGAAGAGGTACAACCGTTGCTCAAATCTCCATATTCGTGT 36542 ||||| || ||||| ||| | ||| || ||||||||| ||| || ||| | || ||| Sbjct 14415 TCGGGGTTGAAATGCGGTCCGGCAGACGTGCAACCGTTGGTCAGGTCGCCAAACTCATGT 14474 Query 36543 ATGTGAATACCGTG 36556 | ||||| ||||| Sbjct 14475 ACGTGAAAGCCGTG 14488 >seq47143 Length=13737 Score = 86.0 bits (94), Expect = 4e-12 Identities = 157/230 (68%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 33143 CCGCCTCTTAACCGCAACACCAAATGCAATGTCGACTCTTTTTGTATATTGTAATCAGAC 33202 || || | ||| || || || |||||||| || || ||||| || ||||| || ||| | Sbjct 814 CCACCGCGTAAACGTAAGACTAAATGCAACGTGGATTCTTTCTGAATATTATAGTCATTC 873 Query 33203 AAATTGAGTTGGTCATCCAATTGCTTTCCACTAAATATTAAACGTTGCTGGTCCGTGGGT 33262 || | | || || | ||| ||||| |||||||| ||||| || || | || Sbjct 874 AACGTTCTTCCATCTTCTAGTTGTTTTCCGGCGAATATTAACCGTTGTTGATCTGGAGGA 933 Query 33263 ATGCCTTCTTTTTCGCTAATCGCCTGTTTTACTGTTTGAATCGTGTCGTTGGGTTGAACG 33322 || ||||| || || ||| | ||| || ||| |||||| ||| || | || Sbjct 934 ATACCTTCCTTATCTTGAATTTTCGCTTTAACATTTTCAATCGTATCGGATGGCTCGACT 993 Query 33323 TCCAGAGTTATCGTTTTTCCCGTAAGAGTTTTTACGAAAATTTGCATGTT 33372 || || || || ||||| || || | |||||| || ||||||||||| || Sbjct 994 TCAAGCGTAATGGTTTTACCAGTTAAAGTTTTCACAAAAATTTGCATTTT 1043 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 318408697909794