Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Mengenilla_20moldrzyki_20[genbank_20GCA_5F000281935.1_202012-07-27] 94,953 sequences; 155,727,465 total letters Query= NC_005309.1 Length=359853 Score E Sequences producing significant alignments: (Bits) Value seq87437 190 5e-43 seq18871 190 5e-43 seq47143 187 6e-42 seq73680 98.7 2e-15 seq5310 87.8 4e-12 >seq87437 Length=6430 Score = 190 bits (210), Expect = 5e-43 Identities = 170/213 (80%), Gaps = 0/213 (0%) Strand=Plus/Minus Query 104351 ACTAGATGTAATGTAGATTCTTTCTGAATATTATAGTCAGATAGAGTTCTACCGTCTTCT 104410 |||||||| ||||| ||||| |||||||||||||| ||| || |||| |||||| ||| Sbjct 507 ACTAGATGCAATGTCGATTCCTTCTGAATATTATAATCACTTAACGTTCGACCGTCCTCT 448 Query 104411 AGTTGTTTTCCAGCAAAAATTAGCCTCTGTTGATCAGGAGGTATTCCTTCTTTATCCTGA 104470 | ||||||||||||||| |||| | ||| || || ||||| |||||||| ||||| ||| Sbjct 447 AATTGTTTTCCAGCAAATATTAAGCGCTGCTGGTCTGGAGGAATTCCTTCCTTATCTTGA 388 Query 104471 ATCTTTGCTTTTACATTTTCTACGGTATCGCTAGGTTCTACCTCTAGTGTAATAGTCTTA 104530 |||||||| || |||||||| | ||||| | || ||||| || ||||| || ||| Sbjct 387 ATCTTTGCCTTAACATTTTCAATTGTATCTGATGACTCGACCTCAAGCGTAATTGTTTTA 328 Query 104531 CCAGTAAGTGTTTTTACAAATATCTGCATTTTG 104563 ||||| | ||||| || || |||||||||||| Sbjct 327 CCAGTTAACGTTTTCACGAAAATCTGCATTTTG 295 >seq18871 Length=4271 Score = 190 bits (210), Expect = 5e-43 Identities = 180/230 (78%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 104330 ATTCCCCCTCTTAGCCTAAGTACTAGATGTAATGTAGATTCTTTCTGAATATTATAGTCA 104389 ||||| |||| ||||| || |||||||| | || |||||||||||||||||||| ||| Sbjct 2530 ATTCCACCTCGTAGCCGTAGAACTAGATGGAGGGTGGATTCTTTCTGAATATTATAATCA 2589 Query 104390 GATAGAGTTCTACCGTCTTCTAGTTGTTTTCCAGCAAAAATTAGCCTCTGTTGATCAGGA 104449 |||| ||||| || ||||| | ||||| ||||| ||||| | || |||||||| || Sbjct 2590 GATAAAGTTCGGCCATCTTCCAACTGTTTACCAGCGAAAATCAACCGTTGTTGATCTGGT 2649 Query 104450 GGTATTCCTTCTTTATCCTGAATCTTTGCTTTTACATTTTCTACGGTATCGCTAGGTTCT 104509 || || ||||||||||||||||| || ||||| || ||||| | |||||| |||| Sbjct 2650 GGAATACCTTCTTTATCCTGAATTTTCGCTTTAACGTTTTCAATGGTATCTGATTGTTCA 2709 Query 104510 ACCTCTAGTGTAATAGTCTTACCAGTAAGTGTTTTTACAAATATCTGCAT 104559 || |||| || || || || ||||| | |||||||||||| || ||||| Sbjct 2710 ACTTCTAACGTTATTGTTTTTCCAGTTAATGTTTTTACAAAAATTTGCAT 2759 Score = 159 bits (176), Expect = 8e-34 Identities = 162/210 (77%), Gaps = 1/210 (0%) Strand=Plus/Plus Query 104350 TACTAGATGTAATGTAGATTCTTTCTGAATATTATAGTCAGATAGAGTTCTACCGTCTTC 104409 ||||| ||| || || ||| ||| ||||||||| || ||||||| || | |||||| || Sbjct 2778 TACTAAATGCAAGGTCGATCCTT-CTGAATATTGTAATCAGATAATGTGCGACCGTCCTC 2836 Query 104410 TAGTTGTTTTCCAGCAAAAATTAGCCTCTGTTGATCAGGAGGTATTCCTTCTTTATCCTG 104469 || ||||| ||||||||||||| || ||| ||||| || || || || ||||| ||||| Sbjct 2837 TAACTGTTTGCCAGCAAAAATTAACCGCTGCTGATCTGGTGGAATACCCTCTTTGTCCTG 2896 Query 104470 AATCTTTGCTTTTACATTTTCTACGGTATCGCTAGGTTCTACCTCTAGTGTAATAGTCTT 104529 ||||| ||||| |||||||| | || || || || || || | ||| ||||| || Sbjct 2897 GATCTTGGCTTTAACATTTTCAATTGTGTCTGAAGACTCCACTTCCAATGTTATAGTTTT 2956 Query 104530 ACCAGTAAGTGTTTTTACAAATATCTGCAT 104559 ||||| | ||||||||||| |||||||| Sbjct 2957 TCCAGTTAACGTTTTTACAAAAATCTGCAT 2986 Score = 143 bits (158), Expect = 6e-29 Identities = 141/182 (77%), Gaps = 0/182 (0%) Strand=Plus/Plus Query 104351 ACTAGATGTAATGTAGATTCTTTCTGAATATTATAGTCAGATAGAGTTCTACCGTCTTCT 104410 |||| ||| || || ||||||||||| ||||| || || || ||||||| || ||||| Sbjct 2272 ACTAAATGCAACGTCGATTCTTTCTGTATATTGTAATCCGAAAGAGTTCGGCCATCTTCC 2331 Query 104411 AGTTGTTTTCCAGCAAAAATTAGCCTCTGTTGATCAGGAGGTATTCCTTCTTTATCCTGA 104470 | |||||| ||||||||||||| | || |||||||| || || ||||| ||||||||| Sbjct 2332 AATTGTTTACCAGCAAAAATTAATCGTTGCTGATCAGGCGGAATACCTTCCTTATCCTGA 2391 Query 104471 ATCTTTGCTTTTACATTTTCTACGGTATCGCTAGGTTCTACCTCTAGTGTAATAGTCTTA 104530 || || || || || ||||| | ||||| || || || || ||||||||||| ||| Sbjct 2392 ATTTTAGCCTTGACGTTTTCAATAGTATCCGATGGCTCCACTTCAAGTGTAATAGTTTTA 2451 Query 104531 CC 104532 || Sbjct 2452 CC 2453 Score = 141 bits (156), Expect = 2e-28 Identities = 158/211 (75%), Gaps = 0/211 (0%) Strand=Plus/Plus Query 104350 TACTAGATGTAATGTAGATTCTTTCTGAATATTATAGTCAGATAGAGTTCTACCGTCTTC 104409 ||| | ||| | |||||||| || || || || ||||| |||| || | |||||||| Sbjct 3005 TACCAAATGCAGAGTAGATTCCTTTTGGATGTTGTAGTCGGATAACGTACGGCCGTCTTC 3064 Query 104410 TAGTTGTTTTCCAGCAAAAATTAGCCTCTGTTGATCAGGAGGTATTCCTTCTTTATCCTG 104469 || |||||| ||||||||||||| | |||||||| || || ||||||||||| ||||| Sbjct 3065 TAATTGTTTGCCAGCAAAAATTAATCGTTGTTGATCTGGCGGAATTCCTTCTTTGTCCTG 3124 Query 104470 AATCTTTGCTTTTACATTTTCTACGGTATCGCTAGGTTCTACCTCTAGTGTAATAGTCTT 104529 || ||||| || || ||||| | || || | || || || | ||||| || || Sbjct 3125 GATTTTTGCCTTAACGTTTTCAATTGTGTCAGATGACTCGACTTCCAAAGTAATCGTTTT 3184 Query 104530 ACCAGTAAGTGTTTTTACAAATATCTGCATT 104560 |||||| | ||||| |||||||| |||||| Sbjct 3185 ACCAGTTAAAGTTTTCACAAATATTTGCATT 3215 Score = 131 bits (144), Expect = 4e-25 Identities = 133/171 (78%), Gaps = 2/171 (1%) Strand=Plus/Plus Query 104330 ATTCCCCCTCTTA-GCCTAAGTACTAGATGTAATGTAGATTCTTTCTGAATATTATAGTC 104388 ||||| || | || || ||| |||| || || || |||||||| ||||||||||| || Sbjct 2023 ATTCCACCGCGTAAGCGTAAA-ACTAAGTGCAAAGTGGATTCTTTTTGAATATTATAATC 2081 Query 104389 AGATAGAGTTCTACCGTCTTCTAGTTGTTTTCCAGCAAAAATTAGCCTCTGTTGATCAGG 104448 ||||| |||| || || || |||||||||||||||||||||| | ||| ||||| || Sbjct 2082 AGATAACGTTCGGCCATCCTCAAGTTGTTTTCCAGCAAAAATTAAACGCTGCTGATCTGG 2141 Query 104449 AGGTATTCCTTCTTTATCCTGAATCTTTGCTTTTACATTTTCTACGGTATC 104499 || || ||||| || || ||||| || ||||| |||||||| | ||||| Sbjct 2142 CGGAATACCTTCCTTGTCTTGAATTTTCGCTTTGACATTTTCAATTGTATC 2192 >seq47143 Length=13737 Score = 187 bits (206), Expect = 6e-42 Identities = 173/218 (79%), Gaps = 1/218 (0%) Strand=Plus/Plus Query 104346 TAAGTACTAGATGTAATGTAGATTCTTTCTGAATATTATAGTCAGATAGAGTTCTACCGT 104405 |||| |||| ||| || || |||||||||||||||||||||||| | ||||| || | Sbjct 828 TAAG-ACTAAATGCAACGTGGATTCTTTCTGAATATTATAGTCATTCAACGTTCTTCCAT 886 Query 104406 CTTCTAGTTGTTTTCCAGCAAAAATTAGCCTCTGTTGATCAGGAGGTATTCCTTCTTTAT 104465 |||||||||||||||| || || |||| || |||||||| ||||| || ||||| |||| Sbjct 887 CTTCTAGTTGTTTTCCGGCGAATATTAACCGTTGTTGATCTGGAGGAATACCTTCCTTAT 946 Query 104466 CCTGAATCTTTGCTTTTACATTTTCTACGGTATCGCTAGGTTCTACCTCTAGTGTAATAG 104525 | ||||| || ||||| |||||||| | |||||| || || || || || ||||| | Sbjct 947 CTTGAATTTTCGCTTTAACATTTTCAATCGTATCGGATGGCTCGACTTCAAGCGTAATGG 1006 Query 104526 TCTTACCAGTAAGTGTTTTTACAAATATCTGCATTTTG 104563 | |||||||| | ||||| ||||| || ||||||||| Sbjct 1007 TTTTACCAGTTAAAGTTTTCACAAAAATTTGCATTTTG 1044 >seq73680 Length=8834 Score = 98.7 bits (108), Expect = 2e-15 Identities = 210/311 (68%), Gaps = 12/311 (4%) Strand=Plus/Plus Query 238429 GACGTGAACTAGCTGATAATTTTTGCTATTATAATAAAAGATATGATTCTATAGAA---- 238484 |||||||||| | ||||||| || ||||| ||| || || |||||||| || Sbjct 7541 GACGTGAACTGTCCGATAATTACTGTTATTACAATGAACATTACGATTCTATTGATGGTG 7600 Query 238485 -TCCACACATTCATGGGCACGAGAA-ACATTAGAAGCACACGTAAATGATAGAAGAAAAT 238542 |||| || ||||| | |||| ||||| | | || || |||| | | | | Sbjct 7601 CTCCAGAC-----TGGGCTC-AGAAGACATTGAATGATCATCGGAAGGATAAACGCGAGT 7654 Query 238543 ATATTTACTCTTTAAAACAGCTCGAGAGAGCCGAAACTCACGATCCCCTATGGAATTCCG 238602 || | || | | ||||| | || || || |||| |||||||| |||||||| | Sbjct 7655 ATTTGTATACACTTAAACAATTTGAAAGTGCAAAAACGCACGATCCTTTATGGAATGGTG 7714 Query 238603 CCCAGATACAAATGGTAAGACTAGGCAAAATGCATAGTTTCTTACGAATGTATTGGGCTA 238662 | || | || | ||| || |||||||| ||| ||||| | |||||||||||||||| Sbjct 7715 CGCAAAATGAACTACTAAAACGGGGCAAAATACATGGTTTCATGCGAATGTATTGGGCTA 7774 Query 238663 AAAAGATACTTGAATGGACTAGATCTCCAAAGGAAGCTCTTAGATATAGTATTTATCTGA 238722 |||| || | ||||||| || || || | |||||| ||| | | |||| | | | Sbjct 7775 AAAAAATTTTGGAATGGAGCAGTTCGCCCGAAGAAGCTATTAAAATTGCAATTTTTTTAA 7834 Query 238723 ACGATAAATAC 238733 ||||| | ||| Sbjct 7835 ACGATTATTAC 7845 >seq5310 Length=1504 Score = 87.8 bits (96), Expect = 4e-12 Identities = 139/199 (70%), Gaps = 3/199 (2%) Strand=Plus/Minus Query 269069 TGTGTGAGaaaaaaaTCTGAATGGGCTCTGAAATGGAT---AAACGATAGCGCGCCTTAC 269125 ||||| | ||| ||| | || ||||| | |||||||| ||| | | || | | | Sbjct 653 TGTGTTAAAAAGAAAGCCGATTGGGCCTTAAAATGGATTTCAAATCAGAATGCAACATTC 594 Query 269126 GGAGAAAGGTTAGTTGCTTTTGCCGCTGTAGAAGGTATATTCTTTTCGGGGTCTTTTGCC 269185 || ||| || | |||||||||| ||||| ||||| || ||||| || || ||||||| Sbjct 593 GGTGAACGGCTGATTGCTTTTGCGGCTGTCGAAGGCATTTTCTTCTCCGGAAGTTTTGCC 534 Query 269186 GCTATCTTTTGGTTGAAGAAAAGAGGCCTTATGCCAGGATTAACTTTCTCTAACGAATTG 269245 ||||| || ||| | || ||| || || | ||||| || || |||| || ||| | Sbjct 533 GCTATATTCTGGCTCAAAAAACGACGCTTAATGCCTGGCTTGTCTTTTAGCAATGAACTT 474 Query 269246 ATAAGCAGGGACGAAGGTT 269264 ||| | |||||||||| Sbjct 473 ATATCGCGTGACGAAGGTT 455 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1149997625617724